Don Richards DonRichards

A file to get the structure of a database. Just pass it the name of the db in question.

./inspect_db.sh dvndb

# Or to get all of them
./inspect_db.sh

Perfect. I'll prepare a comprehensive document covering everything that can go wrong with Docker and docker compose on RHEL (with SELinux disabled, local XFS storage, using the modern docker compose plugin). I'll also focus on inter-container communication issues, filesystem migration problems, and networking edge cases that match your setup.

I'll get back to you soon with a detailed, organized, and actionable draft you can use for your 30+ page paper.

Comprehensive Docker on RHEL Troubleshooting Guide

Introduction

Migrating a containerized environment between different host systems can expose numerous failure modes. In this scenario, Docker Engine v26.1.3 (with the Docker Compose v2.27.0 plugin) was moved from an Ubuntu setup (using S3-backed storage for volumes) to a Proxmox-based RHEL host. The new host uses local storage on an XFS filesystem for Docker’s data-root, and SELinux has been fully disabled. After migration, containers could ping each other, yet HTTP requests (

TL;DR

Original Repo: https://github.com/DurrLab/C3VD
Code to focus on: https://github.com/DurrLab/C3VD/blob/6285dea2c0f4b6d9a3749180ffa3e4170db8c597/index.html#L140

To get the file list manually

curl "https://archive.data.jhu.edu/api/datasets/:persistentId?persistentId=doi:10.7281/T1WF3NZ7" | jq '.data.latestVersion.files[] | {label: .label, id: .dataFile.id}'

To down one of them

WIthin Cursor click the + character next to notepads in the left column.

Description:

Give it a name that describes to the LLM what it's for like "drupal-developer"

Give it a useful description:

maintaining a clean, scalable, and secure Drupal codebase in a Composer-managed, containerized environment while following best practices for development, theming, and database interactions

What files to point at:

Globs: codebase/*

	# Use an official Python runtime as a parent image
	FROM python:3.10-slim

	# Set environment variables
	ENV PYTHONUNBUFFERED=1

	# Install dependencies
	RUN apt-get update && \
	apt-get install -y --no-install-recommends \
	tesseract-ocr \

	#!/bin/bash

	# Globals
	DOMAIN="dataverse-clone.mse.jhu.edu"
	PAYARA="/usr/local/payara"
	CURRENT_VERSION="6.2"
	DATAVERSE_USER="dataverse"
	PAYARA_EXPORT_LINE="export PAYARA=\"$PAYARA\""
	BAGIT_NUMBER_OF_THREADS=10

	#!/bin/bash

	# Globals
	DOMAIN="dataverse-clone.mse.jhu.edu"
	PAYARA_OLD="/usr/local/payara5"
	PAYARA_NEW="/usr/local/payara6"
	JAVA_UPGRADE_SCRIPT_URL="https://gist.github.com/DonRichards/cb992523a5ec588f1fb978d752d0d030/raw/upgrade_java.sh"
	PAYARA_ZIP_URL="https://nexus.payara.fish/repository/payara-community/fish/payara/distributions/payara/6.2023.8/payara-6.2023.8.zip"
	DATAVERSE_WAR_URL="https://github.com/IQSS/dataverse/releases/download/v6.0/dataverse-6.0.war"
	SOLR_TAR_URL="https://archive.apache.org/dist/solr/solr/9.3.0/solr-9.3.0.tgz"

	#!/bin/bash
	# Used release to generate this: https://github.com/IQSS/dataverse/releases/tag/v6.2

	# Globals
	DOMAIN="dataverse-clone.mse.jhu.edu"
	PAYARA="/usr/local/payara"
	SOLR_SCHEMA_URL="https://raw.githubusercontent.com/IQSS/dataverse/v6.2/conf/solr/9.3.0/schema.xml"
	SOLR_SCHEMA_FILE=$(basename "$SOLR_SCHEMA_URL")
	DATAVERSE_WAR_URL="https://github.com/IQSS/dataverse/releases/download/v6.2/dataverse-6.2.war"
	DATAVERSE_WAR_FILE="/home/dataverse/dataverse-6.2.war"

	#!/bin/bash

	# Globals
	DOMAIN="dataverse-clone.mse.jhu.edu"
	PAYARA="/usr/local/payara"
	DATAVERSE_WAR_URL="https://github.com/IQSS/dataverse/releases/download/v6.1/dataverse-6.1.war"
	DATAVERSE_WAR_FILE="/home/dataverse/dataverse-6.1.war"
	DATAVERSE_WAR_HASH="c6e931a7498c9d560782378d62b9444699d72b9c28f82f840ec4a4ba04b72771"
	GEOSPATIAL_URL="https://github.com/IQSS/dataverse/releases/download/v6.1/geospatial.tsv"
	GEOSPATIAL_FILE="/tmp/geospatial.tsv"

	// npm install puppeteer
	// node measure_video_load.js https://digital.library.jhu.edu/islandora/dumb-show
	const puppeteer = require('puppeteer');

	(async () => {
	// Get the URL from command-line arguments
	const url = process.argv[2]; // The URL is the third argument in the command line (0 = node, 1 = script name, 2 = URL)

	if (!url) {
	console.error('Please provide a URL as an argument.');