Ali Ghorbani GhorbaniAli
💪
GhorbaniAli
/ gist:cf51f19f219d6e7ea4171e0c16fc2742
Created
July 25, 2023 20:48
— forked from brentp/gist:819611
install annovar and use it to annotate a vcf with hg19
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| wget http://www.openbioinformatics.org/annovar/download/annovar.latest.tar.gz.mirror | |
| tar xzvf annovar.tar.gz | |
| cd annovar | |
| # download databases (goes to UCSC) | |
| ./annotate_variation.pl -buildver hg19 -downdb 1000g2010nov humandb | |
| ./annotate_variation.pl -buildver hg19 -downdb avsift humandb | |
| ./annotate_variation.pl -buildver hg19 -downdb refGene humandb | |
| ./annotate_variation.pl -buildver hg19 -downdb mce46way humandb/ | |
| ./annotate_variation.pl -buildver hg19 -downdb snp131 humandb/ |