Ido Bar IdoBar

Setup Zenodo DOI badge before the first release

Before submitting your first release, identify your Github repo id on Github API at:

https://api.github.com/repos/{user}/{repo}

Installation:

A quick installation does not require root access, as shown:

(wget -O - pi.dk/3 || curl pi.dk/3/ || fetch -o - http://pi.dk/3) | bash

	#! /bin/bash

	## See also https://github.com/nextflow-io/nextflow/discussions/4308

	## cd to a parent directory for a Nextflow pipeline executation, i.e. contains .nextflow and work directories
	WORKDIR=$1
	## Find work directories essential to the last pipeline run, as absolute paths
	nextflow log last > $WORKDIR/preserve_dirs.txt

	## Find all work directories, as absolute paths

	#! /bin/bash
	# Ask user for sudo password (to be used when needed)
	read -s -p "Enter Password for sudo: " sudoPW

	# update CRAN repository below if needed
	REPO="'https://cran.rstudio.com/'"

	# Based on the instructions on Dean Attali's website:
	# https://deanattali.com/2015/05/09/setup-rstudio-shiny-server-digital-ocean/#user-libraries

	# util.R:
	# Utilities to make R a happier place
	# Originally created by Brendan O'Connor, brenocon.com/code
	# Edited by Ido Bar.
	# Source the file directly from this gist using `devtools::source_gist("7f63547158ecdbacf31b54a58af0d1cc", filename = "util.R")`


	########################################
	## Put everything into an environment, to not pollute global namespace
	util = new.env()