Skip to content

Instantly share code, notes, and snippets.

@Jfortin1
Last active August 29, 2015 14:17
Show Gist options
  • Save Jfortin1/8dcc80220b6f9a4f43a0 to your computer and use it in GitHub Desktop.
Save Jfortin1/8dcc80220b6f9a4f43a0 to your computer and use it in GitHub Desktop.
liftOver functions
#Here is how to convert a bigWig file from hg18 to hg19:
bigWigToBedGraph file18.bw hg18.chrom.sizes chfile18.bed
liftOver file18.bed hg18ToHg19.over.chain file19.bed unmapped
bedGraphToBigWig file19.bed hg19.chrom.sizes file19.bw
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment