Juke34

Create Dockerfile

Create a file called anvio_dockerfile and copy paste the following in it and save:

FROM condaforge/miniforge3:24.7.1-2

RUN conda create -y --name anvio-dev python=3.10

RUN conda install -y -c conda-forge -c bioconda python=3.10 \

Juke34

Making a good genome annotation using MAKER3

---

Foreword

Making a good annotation isn't easy, MAKER or not MAKER!
Here I explain the main steps to avoid the pitfalls and make a good annotation using the MAKER annotation tool.

Information on commands and protocols can also be found here: https://nbisweden.github.io/workshop-genome_annotation_elixir/exercises

philippbayer

I changed the following in RepeatMasker/util/createRepeatLandscape.pl to make classes reported by EDTA and TESorter appear in the plot.

Around line 220 I added CACTA repeats as their own class:

              [ 'DNA/Transib',    '#FF9972' ],
              [ 'DNA/CACTA',      '#D45B2C' ],

I got the color by googling #FF9972 and then clicking around in that feature to get a similar looking color.

Then, around line 700, I added all these translations:

zthxxx

Note

For every body who using Win10/11 with new Office that you need to know:

to active Office without crack, just follow https://github.com/WindowsAddict/IDM-Activation-Script,

you wiil only need to run

irm https://massgrave.dev/ias | iex

jcavat

FROM php:7.1.2-apache 
RUN docker-php-ext-install mysqli