Peter Hickey PeteHaitch

Run a Bioconductor Workshop on a Google Cloud Instance

To run one of the workshops for Bioc2020, follow these steps after determining which workshop you'd like to run and finding the docker image name. Substitute the docker image name below for tidytranscriptomics if desired.

Prereqs

A google cloud platform account (which you can create with $300 free credit if you don't have one)
Installed google cloud sdk (the gcloud command)

What if a function in a package has no examples? Or is poorly exampled? Wouldn't it be nice to find functioning instances of it "in the wild"?

Via Twitter, Noam Ross taught me a clever way to do such searches on GitHub. Put this into the GitHub search box to see people using the llply() function from plyr:

"llply" user:cran language:R

Or just click here.

	// ----- count.c
	// build with R CMD SHLIB count.c (or put it in the package, w/e)

	#include <R.h>
	#include <Rinternals.h>

	SEXP colsum_which_eq0(SEXP nrows_, SEXP ncols_, SEXP J_)
	{
	SEXP ret;
	const int nrows = INTEGER(nrows_)[0];

	#!/path/2/Rscript

	# License: CC0 (just be nice and point others to where you got this)
	# Author: Robert M Flight <[email protected]>, github.com/rmflight
	#
	# This is a post-commit hook that after a successful commit subsequently increments the package version in DESCRIPTION
	# and commits that. Analogous to the pre-commit at https://gist.github.com/rmflight/8863882, but useful if you only have
	# good reasons for not doing it on the pre-commit.
	#
	# To install it, simply copy this into the ".git/hooks/post-commit" file of your git repo, change /path/2/Rscript, and make

	.Rproj.user
	.Rhistory
	.RData
	*.Rproj
	*.html

	Thanks to @Adrian_H, @RoryKirchner, @genetics_blog,
	@leonidkrugliak, @Graham_Coop, @yokofakun,
	@pathogenomenick, @caseybergman, @Jalfoldi,
	@Paul_R_Johnston, @gknoProject, @David_Dobbs,
	@vsbuffalo, @robinhenig, @nccomfort,
	@GholsonLyon, @notSoJunkDNA, @neilfws,
	@rovingpencil, @rtraborn

	In addition, please refer to Casey Bergman's collection of other books:
	http://www.librarything.com/catalog/xylem&tag=genetics&collection=-1