PlethoraChutney

#!/usr/bin/env python
from coloraide import Color
import pyperclip
import argparse
from pathlib import Path

def main(args):
    vol_base, num_vols = args.num_vols.split(".")
    vol_base = "#" + vol_base
    num_vols = int(num_vols)

PlethoraChutney

#!/usr/bin/env python
from pathlib import Path
import re

srt_timestamp_pattern = r"^(\d{2}):(\d{2}):(\d{2}),(\d{3}) --> (\d{2}):(\d{2}):(\d{2}),(\d{3})$"

def seconds_to_minsec(full_seconds:float) -> list[int, int, int, int]:
    hours = full_seconds // 3600
    full_seconds -= hours * 3600
    minutes = full_seconds // 60

PlethoraChutney

#!/usr/bin/env python
import sys
import struct

with open(sys.argv[1], "rb") as f:
    [nx, ny, nz] = [x[0] for x in struct.iter_unpack('i', f.read(12))]

    # don't care about mode, start
    _ = f.read(16)

PlethoraChutney

#!/usr/bin/env python

from cryosparc.tools import CryoSPARC
import json
import argparse
import numpy as np

# you would need to enter your information for CryoSPARC here
with open('/u/rposert/instance-info.json', 'r') as f:
    instance_info = json.load(f)

PlethoraChutney

PlethoraChutney

PlethoraChutney

PlethoraChutney

PlethoraChutney

PlethoraChutney

from cryosparc.tools import CryoSPARC
import numpy as np

cs = CryoSPARC(
  # you'll need env variables here, or just set stuff directly
)
cs.test_connection()

# we will filter fullsize_particles so that only the intersection with
# downsampled particles are retained. ctf, alignments, etc. will all