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Plot dependency network copy-pasted from https://gist.github.com/crsh/c906e93c260488e7363ea606243057c2 but considered all dependencies
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#' Plot network of package dependencies | |
#' | |
#' @param pkg package description, can be path or package name. | |
#' See \code{\link[devtools]{as.package}} for more information. | |
#' @param type which packages should be included in the network | |
#' | |
#' @details The resulting plot visualizes the network of package dependencies. | |
#' If you are trying to cut down on package dependencies look for big red | |
#' dots that represent a lot of upstream but few downstream dependencies. | |
#' @import ggplot2 | |
#' @export | |
#' | |
#' @examples | |
plot_dependencies <- function(pkg = ".", type = c("imports", "suggests", | |
"full")) { | |
library("devtools") | |
library("miniCRAN") | |
library("igraph") | |
library("ggplot2") | |
library("ggnetwork") | |
type = match.arg(type) | |
pkg <- devtools::as.package(pkg) | |
if (type != "full") { | |
dependencies <- unlist(strsplit(pkg[[type]], split = "\n")) | |
} else { | |
dependencies <- unlist(strsplit(c(pkg$imports, pkg$suggests), | |
split = "\n")) | |
} | |
dependencies <- gsub("\\n| \\(.+\\)|,", "", dependencies) | |
dependency_graph <- miniCRAN::makeDepGraph(dependencies, suggests = FALSE, | |
enhances = FALSE) | |
class(dependency_graph) <- "igraph" | |
dependency_graph <- dependency_graph + igraph::vertices(pkg$package) + | |
igraph::edges(as.vector(rbind(dependencies, pkg$package))) | |
dependency_graph <- igraph::simplify(dependency_graph) | |
edge_list <- igraph::get.edgelist(dependency_graph) | |
dependency_graph <- igraph::graph(rbind(edge_list[, 2], edge_list[, 1])) | |
dependency_graph_df <- ggnetwork::ggnetwork( | |
dependency_graph, | |
arrow.gap = 0.025 | |
) | |
dependency_graph_df$package <- dependency_graph_df$name | |
dependency_graph_df$face <- ifelse(dependency_graph_df$package == pkg$package, | |
"bold", "plain") | |
dependency_graph_df$n_dependencies <- as.vector( | |
table(gsub("\\|.+", "", | |
attr(igraph::E(dependency_graph), | |
"vnames")))[as.character(dependency_graph_df$package)]) | |
dependency_graph_df$n_dependencies[ | |
is.na(dependency_graph_df$n_dependencies)] <- 0 | |
dependency_graph_df$importance <- as.vector( | |
table(gsub(".+\\|", "", | |
attr(E(dependency_graph), | |
"vnames")))[as.character(dependency_graph_df$package)]) | |
dependency_graph_df$importance[is.na(dependency_graph_df$importance)] <- 0 | |
max_downstream_deps <- max(dependency_graph_df$importance) | |
dependency_graph_df$importance <- dependency_graph_df$importance / | |
max_downstream_deps | |
dependency_graph_df$importance <- abs(1 - dependency_graph_df$importance) | |
dependency_graph_df <- as.data.frame(lapply(dependency_graph_df, as.vector)) | |
ggplot(dependency_graph_df, aes(x = x, y = y, xend = xend, yend = yend)) + | |
geom_nodes(aes(color = n_dependencies), size = 6.5, alpha = 0.4) + | |
geom_edges(arrow = arrow(length = unit(4, "pt"), type = "closed"), | |
color = grey(0.4)) + | |
geom_nodelabel_repel( | |
aes(label = package, fontface = face, color = n_dependencies) | |
, box.padding = unit(8, "pt") | |
) + | |
geom_nodes(aes(color = n_dependencies, size = 7 * importance)) + | |
scale_color_viridis_c(option = "inferno", end = 0.9) + | |
scale_size(labels = function(x) { | |
abs(max_downstream_deps - ceiling(x / 7 * max_downstream_deps)) | |
}) + | |
theme_blank(legend.position = "top") + | |
guides( | |
size = guide_legend(title = "Downstream dependencies", | |
title.position = "top", title.hjust = 0.5, | |
label.position = "bottom", label.hjust = 0.5), | |
color = guide_colorbar(title = "Upstream dependencies", | |
title.position = "top", title.hjust = 0.5, | |
barwidth = unit(130, "pt"), | |
barheight = unit(4, "pt")) | |
) | |
} |
In the fourth revision:
- I changed the color scale to viridis
inferno
and set a maximum relative scale of0.9
to avoid the pale yellow/white colors that are difficult to distinguish on white background.
In the fifth revision:
- change layout to be clearer
In the sixth revision:
- change argument name to cope with ggnetwork::fortify.igraph()
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in the third revision:
plasma
scale in order to better see the network,