Torsten Houwaart TorHou
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| # enable local perl with perl libraries for circos installed | |
| PATH=/usr/bin:$PATH | |
| python /home/maticzkd/src/galaxy_circos/plot.py \ | |
| --output $HOME/test.png \ | |
| --circos_path "/home/maticzkd/src/circos-0.67-7/bin/circos -noparanoid" \ | |
| --karyotype \ | |
| /home/maticzkd/src/circos-0.67-7/data/karyotype/karyotype.drosophila.lowres.dm3.txt \ | |
| --cytobands true \ | |
| --tracks \ |
TorHou
/ cherrypy.xml
Last active
August 29, 2015 14:17
Small example server to communicate with a Galaxy Instance
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| <?xml version="1.0"?> | |
| <!-- | |
| If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in | |
| the initial response. If value of 'URL_method' is 'post', any additional params coming back in the | |
| initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. | |
| --> | |
| <tool name="Cherry Py Synchronous" id="cherrypy" tool_type="data_source"> | |
| <description>test</description> | |
| <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> | |
| <inputs action="http://localhost:8090/getdata" check_values="false" method="post"> |