Arvind Balijepalli abalijepalli
abalijepalli
/ plotIonicCurrent.py
Created
February 26, 2015 19:13
Plot an ionic current time-series using MOSAIC (https://github.com/usnistgov/mosaic) functions.
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| """ | |
| Plot an ionic current time-series. | |
| :Created: 02/26/2015 | |
| :Author: Arvind Balijepalli <[email protected]> | |
| :ChangeLog: | |
| .. line-block:: | |
| 02/26/15 AB Initial version | |
| """ | |
| import mosaic.abfTrajIO as abf |
abalijepalli
/ channelGating.py
Created
February 26, 2015 19:10
Estimate the channel gating duration in a single molecule nanopore experiment analyzed with MOSAIC (https://github.com/usnistgov/mosaic).
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| """ | |
| Estimate the channel gating duration in a single molecule nanopore experiment. | |
| :Created: 02/26/2015 | |
| :Author: Arvind Balijepalli <[email protected]> | |
| :ChangeLog: | |
| .. line-block:: | |
| 02/26/15 AB Initial version | |
| """ | |
| import mosaic.abfTrajIO as abf |
abalijepalli
/ mosaicPlot.py
Created
February 26, 2015 18:58
Plot the results of a MOSAIC (https://github.com/usnistgov/mosaic) analysis.
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| """ | |
| Plot the results of a MOSAIC analysis. | |
| :Created: 02/26/2015 | |
| :Author: Arvind Balijepalli <[email protected]> | |
| :ChangeLog: | |
| .. line-block:: | |
| 02/26/15 AB Initial version | |
| """ | |
| import mosaic.qdfTrajIO as qdf |
abalijepalli
/ analyzeSyntheticSingleMoleculeData.py
Last active
September 11, 2015 00:35
Generate synthetic multi-state single molecule data for use with MOSAIC (https://github.com/usnistgov/mosaic)
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| """ | |
| Analyze synthetic multi-state single molecule data generated by syntheticSingleMoleculeData.py | |
| Algorithm settings are imported from .settings file placed in the data directory. | |
| For a description of the settings, please see https://usnistgov.github.io/mosaic/html/doc/settingsFile.html | |
| :Created: 03/05/2015 | |
| :Author: Arvind Balijepalli <arvind.balijepalli@nist.gov> | |
| :ChangeLog: | |
| .. line-block:: |
abalijepalli
/ binaryConvert.py
Last active
August 29, 2015 14:16
A Python gist to convert any data type supported by MOSAIC (https://github.com/usnistgov/mosaic) to a simple binary format.
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| """ | |
| Extend the MOSAIC ConvertToCSV class to export arbitrary binary files. | |
| :Created: 02/25/2015 | |
| :Author: Arvind Balijepalli <[email protected]> | |
| :ChangeLog: | |
| .. line-block:: | |
| 02/25/15 AB Initial version | |
| """ | |
| import mosaic.ConvertToCSV as conv |