Created
May 10, 2019 13:59
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| docker pull biodatageeks/bdg-sequila:0.5.5-spark-2.4.2-SNAPSHOT | |
| docker run -it --rm \ | |
| -e USERID=$UID -e GROUPID=$(id -g) \ | |
| -v /Users/aga/workplace/data/slice:/data \ | |
| biodatageeks/bdg-sequila:0.5.5-spark-2.4.2-SNAPSHOT \ | |
| depthOfCoverage \ | |
| --master=local --driver-memory=8g \ | |
| -- \ | |
| --reads /data/NA12878.slice.bam --format blocks -o /data/NA12878.cov.bed |
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