This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
## DESeq2 made as easy as it should have always been, but for some reason isn't. | |
## Code based on: https://gist.github.com/stephenturner/f60c1934405c127f09a6 | |
library('DESeq2') | |
''' | |
Our starting CSV/TSV looks like: | |
Sample Pairing1 Pairing2 Pairing3 Status KXB65094.1 KXB65950.1 KXB67202.1 .... | |
1 a Active Active Positive Active 0 0 1 | |
2 b Active Active Positive Active 0 1 1 |