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microbes are eating the world

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microbes are eating the world
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alexcritschristoph / deseq2-analysis-template.R
Last active March 6, 2016 21:09 — forked from stephenturner/deseq2-analysis-template.R
Template for analysis with DESeq2
## DESeq2 made as easy as it should have always been, but for some reason isn't.
## Code based on: https://gist.github.com/stephenturner/f60c1934405c127f09a6
library('DESeq2')
'''
Our starting CSV/TSV looks like:
Sample Pairing1 Pairing2 Pairing3 Status KXB65094.1 KXB65950.1 KXB67202.1 ....
1 a Active Active Positive Active 0 0 1
2 b Active Active Positive Active 0 1 1