annasa

annasa / removeOptDups.py

Created September 22, 2014 18:33

Input a sorted (chr and start pos) sam file and output all records except for optical duplicates

	#!/usr/local/bin/python

	"RemoveOpticalDuplicates.py"
	"Author: Anna Salzberg"

	import sys
	import string
	import os
	import time
	import math