Created
December 18, 2012 22:06
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Example display application using app parameters. Notice the new allow_override="True" on params peptide and spectrum.
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| <display id="protvis_mzml" version="1.0.0" name="display with ProtVis"> | |
| <dynamic_links from_file="tool-data/protk_display_site.txt" skip_startswith="#" id="0" name="0"> | |
| <!-- Define parameters by column from file --> | |
| <dynamic_param name="site_id" value="0"/> | |
| <dynamic_param name="site_url" value="1"/> | |
| <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --> | |
| <url target_frame="galaxy_main">${site_url}/init_url?url=${mzml_file.qp}&type=mzml${peptide_param.value}${spectrum_param.value}</url> | |
| <param type="data" name="mzml_file" url="galaxy_${DATASET_HASH}.mzml" /> | |
| <param type="template" name="peptide" allow_override="True" /> | |
| <param type="template" name="peptide_param" strip="True"> | |
| #if str($peptide) | |
| &peptide=$qp($peptide) | |
| #end if | |
| </param> | |
| <param type="template" name="spectrum" allow_override="True" /> | |
| <param type="template" name="spectrum_param" strip="True"> | |
| #if str($spectrum) | |
| &scan=$qp($spectrum) | |
| #end if | |
| </param> | |
| </dynamic_links> | |
| </display> |
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