Created
July 13, 2025 21:11
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Query SRA metadata stored as Parquet files in S3 using DuckDB
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| duckdb -c " | |
| INSTALL httpfs; | |
| LOAD httpfs; | |
| INSTALL parquet; | |
| LOAD parquet; | |
| COPY ( | |
| SELECT * | |
| FROM read_parquet('s3://sra-pub-metadata-us-east-1/sra/metadata/*') | |
| ) TO STDOUT WITH (FORMAT CSV, DELIMITER E'\t', HEADER);" |
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