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arraytools/test.nwt

Last active March 12, 2025 17:49
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causative.nwt for testing
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test.nwt
<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<sbgn xmlns="http://sbgn.org/libsbgn/0.3">
<map id="causative.nwt" language="sif">
<extension>
<renderInformation
xmlns="http://www.sbml.org/sbml/level3/version1/render/version1" id="renderInformation" program-name="sbgnviz" program-version="6.0.1" background-color="#00000000">
<listOfColorDefinitions>
<colorDefinition id="color_1" value="#ffffffff"/>
<colorDefinition id="color_2" value="#323232"/>
<colorDefinition id="color_3" value="#ff8164"/>
<colorDefinition id="color_4" value="#ff5028"/>
<colorDefinition id="color_5" value="#00b414"/>
<colorDefinition id="color_6" value="#ff7353"/>
<colorDefinition id="color_7" value="#ff704f"/>
<colorDefinition id="color_8" value="#ff5c36"/>
<colorDefinition id="color_9" value="#ff8467"/>
<colorDefinition id="color_10" value="#ff5a34"/>
<colorDefinition id="color_11" value="#ff7a5b"/>
<colorDefinition id="color_12" value="#ff7a5c"/>
<colorDefinition id="color_13" value="#ff6a48"/>
<colorDefinition id="color_14" value="#ff623e"/>
<colorDefinition id="color_15" value="#ff7c5e"/>
<colorDefinition id="color_16" value="#ff6c4b"/>
<colorDefinition id="color_17" value="#ff552e"/>
<colorDefinition id="color_18" value="#ff7d60"/>
<colorDefinition id="color_19" value="#ff5c37"/>
<colorDefinition id="color_20" value="#b40014"/>
<colorDefinition id="color_21" value="#ff6e4d"/>
<colorDefinition id="color_22" value="#ff5f3b"/>
<colorDefinition id="color_23" value="#ff8468"/>
<colorDefinition id="color_24" value="#ff7e61"/>
<colorDefinition id="color_25" value="#43a93c"/>
</listOfColorDefinitions>
<listOfBackgroundImages/>
<listOfStyles>
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</style>
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<mapProperties>
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<extraCompartmentPadding>14</extraCompartmentPadding>
<extraComplexPadding>10</extraComplexPadding>
<arrowScale>1.25</arrowScale>
<showComplexName>true</showComplexName>
<dynamicLabelSize>large</dynamicLabelSize>
<inferNestingOnLoad>false</inferNestingOnLoad>
<fitLabelsToNodes>false</fitLabelsToNodes>
<fitLabelsToInfoboxes>false</fitLabelsToInfoboxes>
<recalculateLayoutOnComplexityManagement>true</recalculateLayoutOnComplexityManagement>
<rearrangeOnComplexityManagement>true</rearrangeOnComplexityManagement>
<animateOnDrawingChanges>true</animateOnDrawingChanges>
<adjustNodeLabelFontSizeAutomatically>1</adjustNodeLabelFontSizeAutomatically>
<enablePorts>true</enablePorts>
<enableSIFTopologyGrouping>true</enableSIFTopologyGrouping>
<allowCompoundNodeResize>true</allowCompoundNodeResize>
<mapColorScheme>black_white</mapColorScheme>
<mapColorSchemeStyle>solid</mapColorSchemeStyle>
<mapName>Pathway #sbgn-network-container-0</mapName>
<mapDescription/>
<highlightColor>#0B9BCD</highlightColor>
<extraHighlightThickness>2</extraHighlightThickness>
<mapPD2AFConverted>false</mapPD2AFConverted>
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<w>134.15771484375</w>
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<minW>0</minW>
<minH>0</minH>
<WLBias>0</WLBias>
<WRBias>0</WRBias>
<HTBias>0</HTBias>
<HBBias>0</HBBias>
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<arc id="nwtE_7a9ca91d-d378-4c16-b634-da7f5e6ffbcd" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_dcc4fe0a-453f-4398-9b7b-156da17ed95f">
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<arc id="nwtE_91dc371d-cfb5-40cf-9147-15e06ec5ac23" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_e807d8a3-8945-4533-8bf6-9bb10557513d">
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<arc id="nwtE_ec42c450-4949-4f6e-b17c-a778162e6ded" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_8897a77e-54d6-459a-b201-84aa7c7235a6">
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<arc id="nwtE_2c64ccf0-a4d1-4bed-957c-c2acece7439c" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_a9ab5c37-bfcd-4a65-983f-807cd8a5dda1">
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<arc id="nwtE_d5de2c0b-f253-4f76-ae65-c6005509c350" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_109e92da-f57d-405a-ae3a-4cfc6d95cd22">
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<arc id="nwtE_5454177b-0ace-41ff-b543-2cc367ede285" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_9206b3f9-2077-45c2-9fd8-f4c187945ea1">
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<arc id="nwtE_6ae8b2a4-dc49-4aa3-b248-8013349eade0" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_937a83fb-7a5b-4dd8-ad54-ea771737fa3b">
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<arc id="nwtE_3b62ce3c-a94b-4e1f-b3e3-e778963412ee" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_34275177-b663-4172-9a54-c701bb150dd1">
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<arc id="nwtE_bce6fdfa-ef02-4a01-b2ad-953cde9bbbca" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_64eae22f-bde8-4382-8527-0a6aea04c62c">
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<arc id="nwtE_eba53e8d-6426-442c-8533-71044c7c3d00" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_2e5699e0-0a8e-4dcd-b04a-759ed5cb539e">
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<arc id="nwtE_7a517cb9-3f04-4cc9-a1d4-e59116e95546" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_9b0291df-8086-4daa-9913-fc27e39806fd">
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<arc id="nwtE_a9674619-5bcf-4c0d-be87-dfb59ce3f6d0" class="phosphorylates" source="nwtN_df4c99cf-f82b-4dd0-9b54-34803e40a365" target="nwtN_95ffda43-b332-4b28-83b7-a4d1851f1c5a">
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<arc id="nwtE_55a6b0cc-ab1a-4906-af4a-9edc2abe77f8" class="phosphorylates" source="nwtN_f045c240-776a-4ba1-a18e-d74138c940b8" target="nwtN_4f5849ee-0616-439b-99fd-847c8b982ef3">
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<arc id="nwtE_8a94c859-bbec-45d6-bbbb-ada1ecbdcf65" class="phosphorylates" source="nwtN_f045c240-776a-4ba1-a18e-d74138c940b8" target="nwtN_a4edd411-6c99-4a09-84ef-991cba86661d">
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Raw
test.sif
CDK1 phosphorylates CDC25C PMID:18669648 PMID:18691976 PMID:20068231 PMID:18212344 PMID:10037602 PMID:12766774 PMID:10864927 PMID:16964243 PMID:8119945 T67;S214;S168;S122;T48;T130
PLK1 phosphorylates TP53BP1 PMID:25607646 S1618
CDK1 phosphorylates GOLGA2 PMID:18669648 PMID:10769027 PMID:18691976 PMID:20068231 http://identifiers.org/reactome/R-HSA-2172183 PMID:19007248 PMID:19691289 PMID:9753325 PMID:16964243 http://pathwaycommons.org/pc12/Catalysis_02b70931d30eb9787f1b41a249d51cf9 S37
CDK1 phosphorylates NOLC1 PMID:18234856 T610;T607
CDK1 phosphorylates CDCA5 http://identifiers.org/reactome/R-HSA-2468293 http://identifiers.org/reactome/R-HSA-2468287 PMID:21987589 PMID:21878504 PMID:23901111 http://pathwaycommons.org/pc12/Catalysis_586bb2cda022b46eba851263f52c0def http://pathwaycommons.org/pc12/Catalysis_25c3b62cbd8ca3039684a857bdca851b S139;S126;T159;T115;S209;S83;S75;S181;S33;S21;S79;T48;S164;T111;T151
CDK1 phosphorylates KIF11 PMID:20068230 PMID:20068231 PMID:16565220 PMID:19664994 PMID:19007248 PMID:9235942 PMID:19691289 PMID:19413330 PMID:8548803 T926
CDK1 phosphorylates NCAPG http://identifiers.org/reactome/R-HSA-2514854 PMID:18977199 http://pathwaycommons.org/pc12/Catalysis_e6ddb6a1563fc6ce2b800fe3a8e0d560 T308;T931;T332
CDK1 phosphorylates NPM1 PMID:18669648 PMID:20068231 PMID:14670079 PMID:18234856 PMID:15190079 PMID:12058066 PMID:11278991 PMID:17287340 PMID:19933706 PMID:16912078 PMID:17924679 T219;T208;T237;T205;T234;T199;S70
CDK1 phosphorylates PAICS PMID:18234856 S27
CDK1 phosphorylates TTK S281
PLK1 phosphorylates CIP2A S904
PLK1 phosphorylates PINX1 PMID:20573420 S117;T317;S226;S110;T141;S161
CDK1 phosphorylates ERCC6L http://pathwaycommons.org/pc12/Catalysis_1dff1864813f23e95b7d08d2c63a43f4 http://pathwaycommons.org/pc12/BiochemicalReaction_ef0e1f07401b7648c465549f61b41beb PMID:17218258 T1063
PLK1 phosphorylates ERCC6L PMID:17218258 T1063
PLK1 phosphorylates PTPN1 PMID:23348582 S286;S393
CDK1 phosphorylates NCL PMID:21998300 PMID:18234856 T641;T121;T707
CDK1 phosphorylates BUB1 http://pathwaycommons.org/pc12/Catalysis_47462092c1fa80112cbc96df72b9a20e http://pathwaycommons.org/pc12/BiochemicalReaction_ef5f9371a963616edcd45a682f7bd027 PMID:16760428 S593;T609
CDK1 phosphorylates FLNA PMID:17408621 PMID:25445790 S1436;S1459;S1084;S1630;S1533
CDK1 phosphorylates TMPO PMID:18234856 S424
CDK1 phosphorylates NCAPD2 http://identifiers.org/reactome/R-HSA-2514854 http://pathwaycommons.org/pc12/Catalysis_e6ddb6a1563fc6ce2b800fe3a8e0d560 T1389;T1384;T1339
CDK1 phosphorylates VCPIP1 http://identifiers.org/reactome/R-HSA-8940100 http://pathwaycommons.org/pc12/Catalysis_9fa49578c4f5733ca8db3a6308385b5d PMID:23500464 S768;T761;S131
CDK1 phosphorylates TPX2 PMID:18234856 PMID:25688093 T72;S738
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