avilaHugo

#!/usr/bin/env python3
# -*- coding: UTF-8 -*-

import sys
import argparse
import pandas as pd 

def main(table: str, n_genes: int, target_colname: str) -> None:
    data = (
        pd.read_csv(

avilaHugo

#!/usr/bin/env bash

set -eo pipefail

# echo errors massages and exit.
function error (){
    echo "ERROR: ${*}"
    exit 1
}

avilaHugo

#!/usr/bin/env python3

import os
from sys import argv
from collections import OrderedDict
from itertools import product
from Bio import SeqIO

def get_word_dict(word_size: int = 1, recursive = True):
	"""Get a orderedDict of k-mers with zero values: {"A": 0, "C": 0 ...}