Here's a quick way to loop through running a bunch of species and generating a document by running Knit HTML in RStudio.

maxent_spp_report

---
title: "Maxent Species Report"
output: html_document
---

Here's a quick way to loop through running a bunch of species and generating a document by running Knit HTML in RStudio.

```{r, results='asis'}
spp = c('a','b','c')
for (sp in spp){
  cmd = sprintf('maxent.exe -input %s_in.shp -output %s_out.shp', sp, sp)
  #system(cmd) # uncomment this to run it
  cat(sprintf('## %s\n\ncommand: `%s`\n\n', sp, cmd))
}
```