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| Commit type | Emoji |
|---|---|
| Initial commit | 🎉 :tada: |
| Version tag | 🔖 :bookmark: |
| New feature | ✨ :sparkles: |
| Bugfix | 🐛 :bug: |
Claudio Zanettini c1au6i0
seandavi
/ TCGAtranslateID.R
Last active
January 8, 2024 21:12
Translate GDC file_ids to TCGA barcodes
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| library(GenomicDataCommons) | |
| library(magrittr) | |
| TCGAtranslateID = function(file_ids) { | |
| info = files() %>% | |
| GenomicDataCommons::filter( ~ file_id %in% file_ids) %>% | |
| GenomicDataCommons::select('cases.samples.submitter_id') %>% | |
| results_all() | |
| # The mess of code below is to extract TCGA barcodes | |
| # id_list will contain a list (one item for each file_id) |
