Created
July 17, 2018 11:19
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$ pacaur -S gatk | |
:: Package gatk not found in repositories, trying AUR... | |
:: resolving dependencies... | |
:: There are 4 providers available for java-environment: | |
0) jdk10-openjdk (extra) | |
1) jdk7-openjdk (extra) | |
2) jdk8-openjdk (extra) | |
3) jdk9-openjdk (extra) | |
Enter a number (default=0): 0 | |
:: looking for inter-conflicts... | |
AUR Packages (1) gatk-2:4.0.2.1-1 | |
Repo Packages (6) gradle-4.8.1-1 java-environment-common-3-1 jdk10-openjdk-10.0.1.u10-1 jre10-openjdk-10.0.1.u10-1 jre10-openjdk-headless-10.0.1.u10-1 libnet-1.1.6-3 | |
Repo Download Size: 183.40 MiB | |
Repo Installed Size: 341.92 MiB | |
:: Proceed with installation? [Y/n] | |
:: Retrieving package(s)... | |
:: gatk build files are up-to-date -- skipping | |
sudo: a password is required | |
[sudo] password for ser: | |
:: Checking gatk integrity... | |
==> Making package: gatk 2:4.0.2.1-1 (Вт 17 июл 2018 14:17:57) | |
==> Retrieving sources... | |
-> Found gatk.sh | |
-> Found gatk-4.0.2.1.tar.gz | |
==> Validating source files with sha256sums... | |
gatk.sh ... Passed | |
gatk-4.0.2.1.tar.gz ... Passed | |
:: Preparing gatk... | |
==> Making package: gatk 2:4.0.2.1-1 (Вт 17 июл 2018 14:17:57) | |
==> WARNING: Skipping dependency checks. | |
==> Retrieving sources... | |
-> Found gatk.sh | |
-> Found gatk-4.0.2.1.tar.gz | |
==> WARNING: Skipping all source file integrity checks. | |
==> Extracting sources... | |
-> Extracting gatk-4.0.2.1.tar.gz with bsdtar | |
==> Starting prepare()... | |
Starting a Gradle Daemon (subsequent builds will be faster) | |
FAILURE: Build failed with an exception. | |
* Where: | |
Build file '/home/ser/.cache/pacaur/gatk/src/gatk-4.0.2.1/build.gradle' line: 141 | |
* What went wrong: | |
A problem occurred evaluating root project 'gatk'. | |
> Cannot invoke method getURLs() on null object | |
* Try: | |
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. | |
BUILD FAILED | |
Total time: 3.635 secs | |
==> ERROR: A failure occurred in prepare(). | |
Aborting... | |
:: failed to verify integrity or prepare gatk package |
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