Migrate files in cephfs to a new file layout pool recursivly

migrate.py

import os
import shutil
import logging
import sys
from concurrent.futures import ThreadPoolExecutor
import threading
import uuid
import xattr
from pathlib import Path

start_directory = '.'  # current directory
scratch_directory = '.scratch'
max_parallel_threads = 4

def has_ceph_pool_attr(file_path, pool_value):
    """ Check if the file has the specified ceph pool attribute value using xattr. """
    try:
        attributes = xattr.xattr(file_path)
        ceph_pool = attributes.get('ceph.file.layout.pool').decode('utf-8')
        return ceph_pool == pool_value
    except (IOError, KeyError):
        # IOError for inaccessible files, KeyError if the attribute does not exist
        return False

def process_file(file_path, scratch_dir, uid, gid, ceph_pool_value, hard_links, lock):
    """ Process each file in a separate thread, appending a unique identifier to filenames to avoid overwrites. """
    try:
        if has_ceph_pool_attr(file_path, ceph_pool_value):
            logging.debug(f"Skipping file with specified ceph pool attribute: {file_path}")
            return

        logging.info(f"Processing file: {file_path}")

        # after replacing file, parent folder atime and mtime are modified
        # keep them to replace them
        parent_path = Path(file_path).parent.absolute()
        parent_stat_info = os.stat(parent_path, follow_symlinks=False)
        parent_mtime = parent_stat_info.st_mtime
        parent_atime = parent_stat_info.st_atime        
        
        # Generate a unique identifier and append it to the filename
        unique_suffix = uuid.uuid4().hex
        scratch_file_name = f"{os.path.basename(file_path)}_{unique_suffix}"
        scratch_file_path = os.path.join(scratch_dir, scratch_file_name)

        stat_info = os.stat(file_path, follow_symlinks=False)
        inode = stat_info.st_ino
        nlink = stat_info.st_nlink

        if nlink > 1 or inode in hard_links:
            with lock:
                if inode in hard_links:
                    os.remove(file_path)
                    os.link(hard_links[inode], file_path)
                    logging.info(f"Hard link recreated for file: {file_path}")
                    return
                else:
                    logging.info(f"Hard link added to list for file: {file_path}")
                    hard_links[inode] = file_path

        if os.path.islink(file_path):
            link_target = os.readlink(file_path)
            os.unlink(file_path)
            os.symlink(link_target, file_path)
            os.lchown(file_path, uid, gid)
        else:
            shutil.copy2(file_path, scratch_file_path)
            shutil.copystat(file_path, scratch_file_path)
            os.remove(file_path)
            shutil.move(scratch_file_path, file_path)
            os.chown(file_path, uid, gid)

        # update parent atime and mtime
        os.utime(parent_path, (parent_atime, parent_mtime))            
            
    except Exception as e:
        logging.error(f"Error processing {file_path}: {e}")

def handler(future):
    future.result()
    return

def process_files(start_dir, scratch_dir, ceph_pool_value):
    logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s')

    if not os.path.exists(scratch_dir):
        os.makedirs(scratch_dir)

    hard_links = {}
    lock = threading.Lock()

    with ThreadPoolExecutor(max_workers=max_parallel_threads) as executor:
        for root, dirs, files in os.walk(start_dir):
            dirs.sort()
            files.sort()
            for file in files:
                file_path = os.path.join(root, file)
                if scratch_dir in file_path:
                    continue

                stat_info = os.stat(file_path, follow_symlinks=False)
                uid = stat_info.st_uid
                gid = stat_info.st_gid

                future = executor.submit(process_file, file_path, scratch_dir, uid, gid, ceph_pool_value, hard_links, lock)
                future.add_done_callback(handler)

    if os.path.exists(scratch_dir):
        shutil.rmtree(scratch_dir)

if __name__ == "__main__":
    if len(sys.argv) != 2:
        print("Usage: python script.py <ceph_pool_value>")
        sys.exit(1)

    ceph_pool_value = sys.argv[1]
    process_files(start_directory, scratch_directory, ceph_pool_value)

also to add to consistency one could also check mtime and ctime with some small intervals after the file is moved to see if there is any application/user (that doesnt respect locks) on another client actively writing to the file and move it back and try again later if that is the case

Shouldn't the if scratch_dir in file_path check use something like os.path.commonpath or str.startswith with os.path.normpath? Otherwise it will use the str implementation of in which would match not just scratch_directory (i.e. ".scratch") but also anything with it as a substring (like "my/fancy.scratch.directory/here") as far as I can tell (haven't actually tested that though).

Just wanted to drop by with my take on this concept: https://gist.github.com/marcan/26cc3ac7241f866dca38916215dd10ff

Much like OP, the existing scripts didn't quite do what I want so I rewrote most of it with improvements:

• Automatically migrates to the "intended" layout for any given directory, including object size
• Can handle any number of target layouts without requiring a pre-configured scratch directory (it sets the layout for every new file independently)
• Ignores mountpoints and the scratch dir itself more correctly
• Correctly ignores symlinks (I'm not sure why this script recreates them, I suspect that's just confusion due to link following by default. Symlinks do not have an explicit layout and are always stored in the default data pool, but you need to query the xattr on the link itself without link following to see that it never exists, otherwise you get the link target layout.)
• Fixes race condition updating parent directory (if multiple files are migrated in the same dir in parallel)
• Handles hard links more safely, by only doing the conversion and re-linking once all links are found, so it never breaks links if interrupted (or not all links are found). Also fixes a race condition recreating links (links are never inaccessible)
• Skip files that are recently modified
• Keeps atime/mtime with higher precision for directories
• Clean exit if interrupted (without leaving garbage files or breaking any links)
• Dry run mode
• Avoids scanning/queuing of files running "ahead" of the copying (=avoids unbounded memory usage & issues with interruption)
• Supports multiple target paths