Famke Bäuerle famosab
famosab
/ gdc-to-sarek.py
Created
February 26, 2024 08:17
Transform gdc_sample_sheet and clinical_sheet into nf-core/sarek compatible sheet
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| import click | |
| import pandas as pd | |
| def read_gdc_sheet(filepath: str): | |
| gdc_sheet = pd.read_csv(filepath, sep='\t') | |
| return gdc_sheet | |
| def read_clinical_sheet(filepath: str): | |
| clinical_sheet = pd.read_csv(filepath, sep='\t') | |
| return clinical_sheet |