Francois Serra fransua

🐜

epigenomiking

senior researcher - cancer structural genomics :elephant: @fransua@genomic.social

fransua / kimchi.py

Created January 26, 2020 21:43 — forked from rebeccabilbro/kimchi.py

For converting Python 2 pickles to Python 3

	# kimchi.py
	# For converting Python 2 pickles to Python 3

	import os
	import dill
	import pickle
	import argparse


	def convert(old_pkl):

fransua / notebook_mem_usage.py

Created June 27, 2019 12:57 — forked from aiguofer/README.md

Find out how much memory each of the jupyter notebooks running on a server is using. Helpful for knowing which ones to shut down. Original code from http://stackoverflow.com/questions/34685825/jupyter-notebook-memory-usage-for-each-notebook

	import argparse
	import re
	import subprocess

	import pandas as pd
	import psutil
	import requests
	import tabulate

	kernel_regex = re.compile(r".+kernel-(.+)\.json")

fransua / figure_1.png

Created March 9, 2016 21:29 — forked from daler/LICENSE

Plot chromosome ideograms along with other genomic data