fredkingham’s gists

fredkingham / merge_episode.py

Created March 17, 2023 14:35

Merge episode

	from intrahospital_api import merge_patient
	from opal import models as opal_models
	from django.db import transaction
	from django.db.models import Count
	import reversion



	def update_singleton(subrecord_cls, old_parent, new_parent):
	if new_parent.__class__ == opal_models.Episode:

fredkingham / times_reviews.py

Created February 8, 2023 11:29

A quick and easy review of timings for lab test loads.

	from django.core.management.base import BaseCommand

	"""
	A script to look at timings for loads
	"""
	import time
	from django.utils import timezone
	import datetime
	from django.conf import settings
	import pytds

fredkingham / delete_old_module.sql

Created December 21, 2022 10:21

Deletes the lab module

	DELETE FROM django_migrations WHERE app='lab';
	DELETE FROM auth_permission WHERE content_type_id in (SELECT id FROM django_content_type WHERE app_label='lab');
	DELETE FROM django_admin_log WHERE content_type_id in (SELECT id FROM django_content_type WHERE app_label = 'lab');
	DELETE FROM reversion_version WHERE content_type_id in (
	SELECT id FROM django_content_type WHERE app_label = 'lab'
	);
	DELETE FROM django_content_type WHERE app_label='lab';

	DROP TABLE lab_labtest CASCADE;
	DROP TABLE lab_labtest_resistant_antibiotics CASCADE;

fredkingham / 107_delete_patients.py

Last active December 21, 2022 10:45

delete zero prefixed patients or their counterparts where at least one does not have elcid native entries

	from plugins.covid import calculator
	from opal.models import Patient
	from elcid.models import Demographics
	from intrahospital_api import loader
	from opal.core import subrecords
	from django.db import transaction
	from django.core.management import call_command
	from plugins.dischargesummary import loader as dicharge_summary_loader

fredkingham / merge_delete_the_easy_patients.py

Last active November 29, 2022 14:07

Merge or delete the easy non zero patients

	from opal.models import Patient
	from elcid.models import Demographics
	from intrahospital_api import loader
	from opal.core import subrecords
	from django.db import transaction


	@transaction.atomic
	def update_patients_with_leading_zero_with_no_counter_part():
	# patients with leading 0s but no duplicate, remove the 0, re-sync all upstream

fredkingham / merge_patients.py

Last active November 24, 2022 09:26

Merges patients that have leading zeros.

	from django.db import transaction
	from opal.core import subrecords
	from intrahospital_api import loader
	from elcid.models import Demographics
	from opal.models import Patient
	from plugins.labtests.models import LabTest


	subrecordsToIgnore = set([
	'InitialPatientLoad',

fredkingham / find_duplicates.py

Created November 15, 2022 11:56

Finds duplicates with the same hospital number and categorises whether they have elcid native data

	from django.core.management.base import BaseCommand
	from django.db.models import Count
	from opal.core import subrecords
	from opal.models import Patient
	from elcid.models import Demographics
	import logging


	logger = logging.getLogger('intrahospital_api')

fredkingham / load_demographics.py

Last active November 8, 2022 11:26

	import datetime
	from django.db import transaction
	from collections import defaultdict
	from django.utils import timezone
	from elcid.utils import timing
	from elcid import models
	from django.conf import settings
	from django.db.models import DateTimeField, DateField
	from opal.core.fields import ForeignKeyOrFreeText
	import csv

fredkingham / check_transfer_histories.py

Created October 28, 2022 10:55

Check the transfer history counts to make sure we are not way out

	"""
	Management command that sends a sanity check about the transfer histories
	"""
	import datetime
	from django.conf import settings
	from django.db.models import Max
	from django.core.management import BaseCommand
	from django.utils import timezone
	from intrahospital_api.apis.prod_api import ProdApi as ProdAPI
	from plugins.admissions.models import TransferHistory

fredkingham / update_transfer_history.py

Last active October 27, 2022 09:37

	import datetime
	from collections import defaultdict
	from elcid.models import Demographics
	from django.db import transaction
	from django.db.models import DateTimeField, Count, BooleanField, DateField
	from django.utils import timezone
	from plugins.admissions.models import TransferHistory
	from django.conf import settings
	from django.contrib.auth.models import User
	from plugins.ipc.episode_categories import IPCEpisode

Fred fredkingham