Created
June 30, 2016 20:20
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cis_ase_generate_testdata
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| rm -f simulated_hets.bam && python simulate_bam_reads.py ~/dat/ref/hs37d5/all_sequences.fa 0.5 1:100000 1:100200 1:10040 0 1:100600 1:100800 | samtools view -bh > simulated_hets.bam && samtools index simulated_hets.bam | |
| rm -f simulated_hets.bam && python simulate_bam_reads.py ~/dat/ref/hs37d5/all_sequences.fa 1.0 1:100000 1:100200 1:10040 0 1:100600 1:100800 | samtools view -bh > simulated_homs.bam && samtools index simulated_homs.bam | |
| rm -f cis_ase_tumor_rna.bam && python simulate_bam_reads.py ~/src/regtools/tests/integration-test/data/fa/test_chr22.fa 0 22:1050 22:1550 22:1950 22:2050 22:2550 22:2950 22:3050 22:3550 22:3950 | samtools view -bh > cis_ase_tumor_rna.bam && samtools index cis_ase_tumor_rna.bam | |
| rm -f cis_ase_tumor_dna.bam && python simulate_bam_reads.py ~/src/regtools/tests/integration-test/data/fa/test_chr22.fa 0.5 22:1050 22:1550 22:1950 22:2050 22:2550 22:2950 22:3050 22:3550 22:3950 | samtools view -bh > cis_ase_tumor_dna.bam && samtools index cis_ase_tumor_dna.bam |
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