gilesc

import pandas as pd
import numpy as np
import patsy

import wrenlab.R.wrap.DESeq2

def fn():
    X = pd.DataFrame(np.random.randint(10000, size=(12, 1000)))
    D = pd.DataFrame({
        "V1": [0,0,0,0,0,0,1,1,1,1,1,1],

gilesc

import atexit
import codecs
import functools
import gzip
import os.path
import shutil
import sys
import tempfile
import urllib.request

gilesc

import functools
import time
import pickle
import os

def decorator(save_path="default"):
    def wrapper(fn):
        @functools.wraps(fn)
        def wrap(self, *args, **kwargs):
            if not os.path.exists(save_path):

gilesc

from dataclasses import dataclass
import pandas as pd
import numpy as np
import scipy.stats

@dataclass
class BinaryAnnotation:
    columns: np.array
    index: np.array
    data: np.array # 2D array of packed bits

gilesc

import os

import psutil
import numpy as np
import sklearn.decomposition

def memory_usage():
    return psutil.Process(os.getpid()).memory_info().rss / 1024 ** 2

def pca(X):

gilesc

#!/usr/bin/env bash

cat <<EOF | ftp
open hgdownload.cse.ucsc.edu
anonymous
[email protected]
cd goldenPath/mm9/database
prompt
mget chr*rmsk.txt.gz
bye

gilesc

module app1;

import std.stdio;

import lib1;

void main() {
    add(2,3).println;
}

gilesc

extern mod std;

fn main() {
    let s = @"foo bar baz";
    // similar results with ~"foo bar baz"

    // These work
    s.substr(1, 5);
    s.slice(1,5);

gilesc

Religiosity negatively correlated with:

- IQ [1]
- Societal health (homicide, suicide, life expectancy) [2]
- hippocampus (part of the brain involved in memory) size [7]

and positively correlated with:
- abortion rates (!) [2]
- poverty [3]
- teen pregnancy [4]

gilesc

--- a/Rakefile
+++ b/Rakefile

@@ -163,7 +163,7 @@ desc "deploy public directory to github pages"
 task :push do
   puts "## Deploying branch to Github Pages "
   (Dir["#{deploy_dir}/*"]).each { |f| rm_rf(f) }
-  system "cp -R #{public_dir}/ #{deploy_dir}"
+  system "cp -R #{public_dir}/* #{deploy_dir}"
   puts "\n## copying #{public_dir} to #{deploy_dir}"