Created
October 7, 2016 18:19
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tSNE script for VSD as input to visualize clusters in sequencing data
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| import sys | |
| import numpy as np | |
| from sklearn.manifold import TSNE | |
| my_data = np.genfromtxt(str(sys.argv[1]), delimiter=',') | |
| model = TSNE(n_components=2, random_state=0,perplexity=int(sys.argv[2])) | |
| tsne = model.fit_transform(np.transpose(my_data)) | |
| np.savetxt(str(sys.argv[3]), tsne, delimiter=",") |
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