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jmchilton/gx_edam.tsv

Created December 15, 2015 15:42
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gx_edam.tsv
ab1 format_2333 Binary format Binary format.
acedb format_2330 Textual format Textual format.
affybatch format_2331 HTML HTML format.
afg format_2561 Sequence assembly format (text) Text format for sequence assembly data.
arff format_2330 Textual format Textual format.
asn1 format_2330 Textual format Textual format.
asn1-binary format_2333 Binary format Binary format.
axt format_2330 Textual format Textual format.
bam format_2572 BAM BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.
bcf format_3020 BCF BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).
bed format_3003 BED Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.
bed12 format_3003 BED Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.
bed6 format_3003 BED Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.
bedgraph format_3475 TSV Tabular data represented as tab-separated values in a text file.
bedstrict format_3003 BED Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.
bgzip format_2333 Binary format Binary format.
bigbed format_3004 bigBed bigBed format for large sequence annotation tracks, similar to textual BED format.
bigwig format_3006 bigWig bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.
biom1 format_3464 JSON Javascript Object Notation format; a lightweight, text-based format to represent structured data using key-value pairs.
bmp format_3547 Image format Format used for images and image metadata.
bowtie_base_index format_2331 HTML HTML format.
bowtie_color_index format_2331 HTML HTML format.
btwisted format_2330 Textual format Textual format.
cai format_2330 Textual format Textual format.
charge format_2330 Textual format Textual format.
checktrans format_2330 Textual format Textual format.
chips format_2330 Textual format Textual format.
chrint format_3475 TSV Tabular data represented as tab-separated values in a text file.
cisml format_2332 XML eXtensible Markup Language (XML) format.
clustal format_2330 Textual format Textual format.
codata format_2330 Textual format Textual format.
codcmp format_2330 Textual format Textual format.
coderet format_2330 Textual format Textual format.
compseq format_2330 Textual format Textual format.
consensusxml format_2332 XML eXtensible Markup Language (XML) format.
cpgplot format_2330 Textual format Textual format.
cpgreport format_2330 Textual format Textual format.
cps format_2333 Binary format Binary format.
cram format_3462 CRAM Reference-based compression of alignment format
csfasta format_1929 FASTA FASTA format including NCBI-style IDs.
csv format_3475 TSV Tabular data represented as tab-separated values in a text file.
ct format_3309 CT File format of a CT (Connectivity Table) file from the RNAstructure package.
cusp format_2330 Textual format Textual format.
customtrack format_3475 TSV Tabular data represented as tab-separated values in a text file.
cut format_2330 Textual format Textual format.
cxb format_2333 Binary format Binary format.
dan format_2330 Textual format Textual format.
data format_1915 Format A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere.
data_manager_json format_3464 JSON Javascript Object Notation format; a lightweight, text-based format to represent structured data using key-value pairs.
dbmotif format_2330 Textual format Textual format.
dbn format_1457 Dot-bracket format Format of RNA secondary structure in dot-bracket notation, originally generated by the Vienna RNA package/server.
dbnsfp.tabular format_3475 TSV Tabular data represented as tab-separated values in a text file.
diffseq format_2330 Textual format Textual format.
digest format_2330 Textual format Textual format.
dreg format_2330 Textual format Textual format.
eigenstratgeno format_2331 HTML HTML format.
eigenstratpca format_2331 HTML HTML format.
einverted format_2330 Textual format Textual format.
eland format_3475 TSV Tabular data represented as tab-separated values in a text file.
elandmulti format_3475 TSV Tabular data represented as tab-separated values in a text file.
embl format_2330 Textual format Textual format.
encodepeak format_3475 TSV Tabular data represented as tab-separated values in a text file.
epestfind format_2330 Textual format Textual format.
eps format_3466 EPS Encapsulated PostScript format
equicktandem format_2330 Textual format Textual format.
eset format_2331 HTML HTML format.
est2genome format_2330 Textual format Textual format.
etandem format_2330 Textual format Textual format.
excel format_2330 Textual format Textual format.
fasta format_1929 FASTA FASTA format including NCBI-style IDs.
fastq format_1930 FASTQ FASTQ short read format ignoring quality scores.
fastqcssanger format_1930 FASTQ FASTQ short read format ignoring quality scores.
fastqillumina format_1931 FASTQ-illumina FASTQ Illumina 1.3 short read format.
fastqsanger format_1932 FASTQ-sanger FASTQ short read format with phred quality.
fastqsolexa format_1933 FASTQ-solexa FASTQ Solexa/Illumina 1.0 short read format.
feattable format_2330 Textual format Textual format.
featurexml format_2332 XML eXtensible Markup Language (XML) format.
fitch format_2330 Textual format Textual format.
fli format_3475 TSV Tabular data represented as tab-separated values in a text file.
fped format_2331 HTML HTML format.
fphe format_2331 HTML HTML format.
fqtoc format_2330 Textual format Textual format.
freak format_2330 Textual format Textual format.
fuzznuc format_2330 Textual format Textual format.
fuzzpro format_2330 Textual format Textual format.
fuzztran format_2330 Textual format Textual format.
garnier format_2330 Textual format Textual format.
gatk_dbsnp format_3475 TSV Tabular data represented as tab-separated values in a text file.
gatk_interval format_2330 Textual format Textual format.
gatk_recal format_3475 TSV Tabular data represented as tab-separated values in a text file.
gatk_report format_2330 Textual format Textual format.
gatk_tranche format_3475 TSV Tabular data represented as tab-separated values in a text file.
gcg format_2330 Textual format Textual format.
geecee format_2330 Textual format Textual format.
gemini.sqlite format_2333 Binary format Binary format.
genbank format_1936 GenBank format Genbank entry format.
genetrack format_2919 Sequence annotation track format Format of a sequence annotation track.
gff format_2305 GFF GFF feature format (of indeterminate version).
gff3 format_1975 GFF3 Generic Feature Format version 3 (GFF3) of sequence features.
gg format_3475 TSV Tabular data represented as tab-separated values in a text file.
gif format_3467 GIF Graphics Interchange Format.
gmaj.zip format_3547 Image format Format used for images and image metadata.
gtf format_2306 GTF Gene Transfer Format (GTF), a restricted version of GFF.
h5 format_2333 Binary format Binary format.
helixturnhelix format_2330 Textual format Textual format.
hennig86 format_2330 Textual format Textual format.
hlf format_2333 Binary format Binary format.
hmm2 format_2330 Textual format Textual format.
hmm3 format_2330 Textual format Textual format.
hmoment format_2330 Textual format Textual format.
html format_2331 HTML HTML format.
idpdb format_2333 Binary format Binary format.
idxml format_2332 XML eXtensible Markup Language (XML) format.
ig format_2330 Textual format Textual format.
im format_3547 Image format Format used for images and image metadata.
interprophet_pepxml format_2332 XML eXtensible Markup Language (XML) format.
interval format_3475 TSV Tabular data represented as tab-separated values in a text file.
interval_index format_2333 Binary format Binary format.
ipynb format_3464 JSON Javascript Object Notation format; a lightweight, text-based format to represent structured data using key-value pairs.
isochore format_2330 Textual format Textual format.
jackknifer format_2330 Textual format Textual format.
jackknifernon format_2330 Textual format Textual format.
jpg format_3547 Image format Format used for images and image metadata.
json format_3464 JSON Javascript Object Notation format; a lightweight, text-based format to represent structured data using key-value pairs.
jsonld format_3464 JSON Javascript Object Notation format; a lightweight, text-based format to represent structured data using key-value pairs.
laj format_2330 Textual format Textual format.
lav format_3014 LAV LAV format of alignments generated by BLASTZ and LASTZ.
ldindep format_2331 HTML HTML format.
len format_3475 TSV Tabular data represented as tab-separated values in a text file.
linecount format_2330 Textual format Textual format.
lped format_2331 HTML HTML format.
maf format_3008 MAF Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.
mafcustomtrack format_2330 Textual format Textual format.
malist format_2331 HTML HTML format.
markx0 format_2330 Textual format Textual format.
markx1 format_2330 Textual format Textual format.
markx10 format_2330 Textual format Textual format.
markx2 format_2330 Textual format Textual format.
markx3 format_2330 Textual format Textual format.
mascotdat format_2330 Textual format Textual format.
match format_2330 Textual format Textual format.
mega format_2330 Textual format Textual format.
meganon format_2330 Textual format Textual format.
memexml format_2332 XML eXtensible Markup Language (XML) format.
mgf format_2330 Textual format Textual format.
motif format_2330 Textual format Textual format.
ms2 format_2330 Textual format Textual format.
msp format_2330 Textual format Textual format.
mz.sqlite format_2333 Binary format Binary format.
mzid format_3247 mzIdentML mzIdentML is the exchange format for peptides and proteins identified from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of proteomics search engines.
mzml format_3244 mzML mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.
mzq format_3248 mzQuantML mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.
mzxml format_2332 XML eXtensible Markup Language (XML) format.
n3 format_3257 Notation3 A shorthand non-XML serialization of Resource Description Framework model, designed with human-readability in mind.
nametable format_2330 Textual format Textual format.
ncbi format_2330 Textual format Textual format.
needle format_2330 Textual format Textual format.
newcpgreport format_2330 Textual format Textual format.
newcpgseek format_2330 Textual format Textual format.
nex format_1912 Nexus format Phylogenetic tree Nexus (text) format.
nexus format_2330 Textual format Textual format.
nexusnon format_2330 Textual format Textual format.
nhx format_1910 newick Phylogenetic tree Newick (text) format.
noreturn format_2330 Textual format Textual format.
nt format_3256 N-Triples A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.
obo format_2549 OBO OBO ontology text format.
owl format_3262 OWL/XML OWL ontology XML serialisation format.
oxlicg format_2333 Binary format Binary format.
oxligl format_2333 Binary format Binary format.
oxling format_2333 Binary format Binary format.
oxliss format_2333 Binary format Binary format.
oxlist format_2333 Binary format Binary format.
oxlits format_2333 Binary format Binary format.
pair format_2330 Textual format Textual format.
palindrome format_2330 Textual format Textual format.
pbed format_2331 HTML HTML format.
pbm format_3547 Image format Format used for images and image metadata.
pcd format_3547 Image format Format used for images and image metadata.
pcx format_3547 Image format Format used for images and image metadata.
pdf format_3508 PDF Portable Document Format
pepcoil format_2330 Textual format Textual format.
pepinfo format_2330 Textual format Textual format.
pepstats format_2330 Textual format Textual format.
peptideprophet_pepxml format_2332 XML eXtensible Markup Language (XML) format.
peptideshaker_archive format_2333 Binary format Binary format.
pepxml format_2332 XML eXtensible Markup Language (XML) format.
pepxml.tsv format_3475 TSV Tabular data represented as tab-separated values in a text file.
pgm format_3547 Image format Format used for images and image metadata.
pheno format_3475 TSV Tabular data represented as tab-separated values in a text file.
phylip format_2330 Textual format Textual format.
phylipnon format_2330 Textual format Textual format.
phyloxml format_2332 XML eXtensible Markup Language (XML) format.
picard_interval_list format_3475 TSV Tabular data represented as tab-separated values in a text file.
pileup format_3015 Pileup Pileup format of alignment of sequences (e.g. sequencing reads) to (a) reference sequence(s). Contains aligned bases per base of the reference sequence(s).
pir format_2330 Textual format Textual format.
plyascii format_2330 Textual format Textual format.
plybinary format_2333 Binary format Binary format.
png format_3547 Image format Format used for images and image metadata.
polydot format_2330 Textual format Textual format.
pphe format_2331 HTML HTML format.
ppm format_3547 Image format Format used for images and image metadata.
preg format_2330 Textual format Textual format.
prettyseq format_2330 Textual format Textual format.
primersearch format_2330 Textual format Textual format.
protxml format_2332 XML eXtensible Markup Language (XML) format.
protxml.tsv format_3475 TSV Tabular data represented as tab-separated values in a text file.
psd format_3547 Image format Format used for images and image metadata.
qcml format_2332 XML eXtensible Markup Language (XML) format.
qual format_2330 Textual format Textual format.
qual454 format_2330 Textual format Textual format.
qualillumina format_2330 Textual format Textual format.
qualsolexa format_2330 Textual format Textual format.
qualsolid format_2330 Textual format Textual format.
rast format_3547 Image format Format used for images and image metadata.
raw_pepxml format_2332 XML eXtensible Markup Language (XML) format.
rdata format_2333 Binary format Binary format.
rdf format_3261 RDF/XML Resource Description Framework (RDF) XML format.
regions format_2330 Textual format Textual format.
rexpbase format_2331 HTML HTML format.
rgb format_3547 Image format Format used for images and image metadata.
rgenetics format_2331 HTML HTML format.
rna_eps format_3466 EPS Encapsulated PostScript format
roadmaps format_2561 Sequence assembly format (text) Text format for sequence assembly data.
sam format_2573 SAM Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.
scf format_1632 SCF Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata.
scidx format_3475 TSV Tabular data represented as tab-separated values in a text file.
score format_2330 Textual format Textual format.
searchgui_archive format_2333 Binary format Binary format.
seqtable format_2330 Textual format Textual format.
sequences format_1929 FASTA FASTA format including NCBI-style IDs.
sf3 format_2333 Binary format Binary format.
sff format_3284 SFF Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing.
showfeat format_2330 Textual format Textual format.
showorf format_2330 Textual format Textual format.
sif format_3475 TSV Tabular data represented as tab-separated values in a text file.
simple format_2330 Textual format Textual format.
sixpack format_2330 Textual format Textual format.
snpeffdb format_2330 Textual format Textual format.
snpmatrix format_2331 HTML HTML format.
snpsiftdbnsfp format_2330 Textual format Textual format.
snptest format_2331 HTML HTML format.
splib format_2330 Textual format Textual format.
splib_noindex format_2330 Textual format Textual format.
sqlite format_2333 Binary format Binary format.
sra format_2333 Binary format Binary format.
srs format_2330 Textual format Textual format.
srspair format_2330 Textual format Textual format.
staden format_2330 Textual format Textual format.
stockholm format_2330 Textual format Textual format.
strider format_2330 Textual format Textual format.
supermatcher format_2330 Textual format Textual format.
svg format_3547 Image format Format used for images and image metadata.
swiss format_2330 Textual format Textual format.
syco format_2330 Textual format Textual format.
tabix format_2333 Binary format Binary format.
table format_2330 Textual format Textual format.
tabular format_3475 TSV Tabular data represented as tab-separated values in a text file.
tagseq format_2330 Textual format Textual format.
tandem format_2332 XML eXtensible Markup Language (XML) format.
taxonomy format_3475 TSV Tabular data represented as tab-separated values in a text file.
textsearch format_2330 Textual format Textual format.
thermo.raw format_2333 Binary format Binary format.
tiff format_3547 Image format Format used for images and image metadata.
toolshed.gz format_2333 Binary format Binary format.
trafoxml format_2332 XML eXtensible Markup Language (XML) format.
traml format_3246 TraML TraML (Transition Markup Language) is the format for mass spectrometry transitions, standardised by HUPO PSI MSS.
triples format_2376 RDF format A serialisation format conforming to the Resource Description Framework (RDF) model.
ttl format_3255 Turtle The Terse RDF Triple Language (Turtle) is a human-friendly serialization format for RDF (Resource Description Framework) graphs.
twobit format_3009 2bit 2bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.
txt format_2330 Textual format Textual format.
uniprotxml format_2332 XML eXtensible Markup Language (XML) format.
vcf format_3016 VCF Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).
vcf_bgzip format_2333 Binary format Binary format.
vectorstrip format_2330 Textual format Textual format.
velvet format_2331 HTML HTML format.
vtkascii format_2330 Textual format Textual format.
vtkbinary format_2333 Binary format Binary format.
wiff format_2333 Binary format Binary format.
wig format_3005 WIG Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.
wobble format_2330 Textual format Textual format.
wordcount format_2330 Textual format Textual format.
xbm format_3547 Image format Format used for images and image metadata.
xgmml format_2332 XML eXtensible Markup Language (XML) format.
xls format_3475 TSV Tabular data represented as tab-separated values in a text file.
xlsx format_2333 Binary format Binary format.
xmfa format_2330 Textual format Textual format.
xml format_2332 XML eXtensible Markup Language (XML) format.
xpm format_3547 Image format Format used for images and image metadata.
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