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| Found 4 test cases to validate for tool shasta / 0.6.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/shasta/shasta.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found kmers|enrichmentThreshold | |
| Found 3 test cases to validate for tool bg_diamond_view / 2.0.8 (@ /Users/jxc755/workspace/tools-iuc/tools/diamond/diamond_view.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| forwardonly | |
| Input should be a valid boolean [type=bool_type, input_value='--forwardonly', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 5 test cases to validate for tool bg_diamond / 2.0.8.0 (@ /Users/jxc755/workspace/tools-iuc/tools/diamond/diamond.xml) | |
| Test Case 1: validation failed - Invalid parameter name found comp-based-stat | |
| Test Case 2: validation failed - Invalid parameter name found comp-based-stat | |
| Test Case 3: validation failed - Invalid parameter name found comp-based-stat | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found comp-based-stat | |
| Found 2 test cases to validate for tool bg_diamond_makedb / 2.0.8 (@ /Users/jxc755/workspace/tools-iuc/tools/diamond/diamond_makedb.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool valet / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/valet/valet.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool repeatmasker_wrapper / 4.1.2-p1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/repeatmasker/repeatmasker.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| gff | |
| Input should be a valid boolean [type=bool_type, input_value='-gff', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - Invalid parameter name found source_type | |
| Test Case 4: validation failed - Invalid parameter name found source_type | |
| Test Case 5: validation failed - Invalid parameter name found source_type | |
| Found 4 test cases to validate for tool ont_fast5_api_fast5_subset / 3.1.3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/ont_fast5_api/fast5_subset.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool ont_fast5_api_single_to_multi_fast5 / 3.1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ont_fast5_api/single_to_multi_fast5.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool ont_fast5_api_compress_fast5 / 3.1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ont_fast5_api/compress_fast5.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool ont_fast5_api_multi_to_single_fast5 / 3.1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ont_fast5_api/multi_to_single_fast5.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool cat_add_names / 5.0.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/cat/cat_add_names.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool cat_prepare / 5.0.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/cat/cat_prepare.xml) | |
| Found 2 test cases to validate for tool cat_contigs / 5.0.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/cat/cat_contigs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool cat_summarise / 5.0.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/cat/cat_summarise.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool cat_bins / 5.0.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/cat/cat_bins.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool hivclustering / 1.3.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/hivclustering/hivclustering.xml) | |
| Test Case 1: validation failed - Invalid parameter name found json | |
| Test Case 2: validation failed - Invalid parameter name found json | |
| Found 1 test cases to validate for tool sarscov2summary / 0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/sarscov2summary/sarscov2summary.xml) | |
| Test Case 1: validated | |
| Found 12 test cases to validate for tool query_tabular / 3.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/query_tabular/query_tabular.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validation failed - 18 validation errors for DynamicModelForTool | |
| query_result.yes.header_prefix.literal[''] | |
| Input should be '' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['62'] | |
| Input should be '62' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['64'] | |
| Input should be '64' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['43'] | |
| Input should be '43' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['60'] | |
| Input should be '60' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['42'] | |
| Input should be '42' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['45'] | |
| Input should be '45' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['61'] | |
| Input should be '61' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['124'] | |
| Input should be '124' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['63'] | |
| Input should be '63' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['36'] | |
| Input should be '36' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['46'] | |
| Input should be '46' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['58'] | |
| Input should be '58' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['38'] | |
| Input should be '38' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['37'] | |
| Input should be '37' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['94'] | |
| Input should be '94' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['35'] | |
| Input should be '35' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| query_result.yes.header_prefix.literal['33'] | |
| Input should be '33' [type=literal_error, input_value='#', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Found 4 test cases to validate for tool filter_tabular / 3.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/query_tabular/filter_tabular.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool sqlite_to_tabular / 3.2.0 (@ /Users/jxc755/workspace/tools-iuc/tools/query_tabular/sqlite_to_tabular.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool metaspades / 3.9.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/metaspades/metaspades.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| files | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| files | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool rseqc_read_distribution / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_distribution.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_tin / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/tin.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_bam_stat / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/bam_stat.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool rseqc_read_hexamer / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_hexamer.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool rseqc_insertion_profile / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/insertion_profile.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool rseqc_bam2wig / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/bam2wig.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found multihits_type_selector | |
| Test Case 3: validation failed - Invalid parameter name found strand_specific | |
| Test Case 4: validation failed - Invalid parameter name found wigsum_type_selector | |
| Found 1 test cases to validate for tool rseqc_geneBody_coverage2 / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/geneBody_coverage2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found rscript_output | |
| Found 1 test cases to validate for tool rseqc_RNA_fragment_size / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/RNA_fragment_size.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_FPKM_count / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/FPKM_count.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_junction_saturation / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/junction_saturation.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_read_NVC / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_NVC.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool rseqc_clipping_profile / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/clipping_profile.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool rseqc_deletion_profile / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/deletion_profile.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_infer_experiment / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/infer_experiment.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_mismatch_profile / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/mismatch_profile.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool rseqc_geneBody_coverage / 2.6.4.3 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/geneBody_coverage.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool rseqc_read_quality / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_quality.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_RPKM_saturation / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/RPKM_saturation.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_inner_distance / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/inner_distance.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_read_GC / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_GC.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_read_duplication / 2.6.4 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/read_duplication.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rseqc_junction_annotation / 2.6.4.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rseqc/junction_annotation.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool tbl2gff3 / 1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/tbl2gff3/tbl2gff3.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool bax2bam / 0.0.11+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bax2bam/bax2bam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| pulsefeatures | |
| Field required [type=missing, input_value={'files': 'set.3.bax.h5,s...'readtype': '--subread'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| pulsefeatures | |
| Field required [type=missing, input_value={'files': 'set.3.bax.h5,s...readtype': '--hqregion'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| pulsefeatures | |
| Field required [type=missing, input_value={'files': 'set.3.bax.h5,s...pe': '--polymeraseread'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validated | |
| Found 7 test cases to validate for tool hypo / 1.0.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hypo/hypo.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found kind-sr | |
| Test Case 4: validation failed - Invalid parameter name found advanced_options|processing-size | |
| Test Case 5: validation failed - Invalid parameter name found log | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 4 test cases to validate for tool trycycler_cluster / 0.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trycycler/trycycler_cluster.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool trycycler_consensus / 0.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trycycler/trycycler_consensus.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 5 test cases to validate for tool trycycler_reconcile_msa / 0.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trycycler/trycycler_reconcile_msa.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found initial_check|max_mash_dist | |
| Test Case 3: validation failed - Invalid parameter name found initial_check|max_mash_dist | |
| Test Case 4: validation failed - Invalid parameter name found initial_check|max_length_diff | |
| Test Case 5: validation failed - Invalid parameter name found initial_check|max_mash_dist | |
| Found 4 test cases to validate for tool trycycler_subsample / 0.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trycycler/trycycler_subsample.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool trycycler_partition / 0.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trycycler/trycycler_partition.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool cutesv / 1.0.8+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/cutesv/cutesv.xml) | |
| Test Case 1: validation failed - Invalid parameter name found seq_method | |
| Test Case 2: validation failed - Invalid parameter name found seq_method | |
| Found 2 test cases to validate for tool multigps / 0.74.0 (@ /Users/jxc755/workspace/tools-iuc/tools/multigps/multigps.xml) | |
| Test Case 1: validation failed - Invalid parameter name found advanced_options | |
| Test Case 2: validation failed - Invalid parameter name found advanced_options | |
| Found 5 test cases to validate for tool snippy / 4.6.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/snippy/snippy.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool snippy_core / 4.6.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/snippy/snippy-core.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool snippy_clean_full_aln / 4.6.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/snippy/snippy_clean_full_aln.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found custom_char_selector | |
| Found 2 test cases to validate for tool fastani / 1.3 (@ /Users/jxc755/workspace/tools-iuc/tools/fastani/fastani.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool tetyper / 1.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/tetyper/tetyper.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool transtermhp / 2.09.1 (@ /Users/jxc755/workspace/tools-iuc/tools/transtermhp/transtermhp.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Found 2 test cases to validate for tool roary / 3.13.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/roary/roary.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| gff_input.__absent__.gffs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| outputs | |
| Field required [type=missing, input_value={'gff_input': {}, 'advanced': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| gff_input.__absent__.gffs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| outputs | |
| Field required [type=missing, input_value={'gff_input': {}, 'percen...': 50.0, 'advanced': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool picard_AddCommentsToBam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_AddCommentsToBam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| comments | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool picard_MergeSamFiles / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_MergeSamFiles.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_DownsampleSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_DownsampleSam.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_BedToIntervalList / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_BedToIntervalList.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_RevertSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_RevertSam.xml) | |
| Test Case 1: validation failed - Invalid parameter name found attribute | |
| Found 1 test cases to validate for tool picard_ReorderSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_ReorderSam.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_CollectWgsMetrics / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectWgsMetrics.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_ReplaceSamHeader / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_ReplaceSamHeader.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_CollectBaseDistributionByCycle / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectBaseDistributionByCycle.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 2 test cases to validate for tool picard_SortSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_SortSam.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool picard_CASM / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectAlignmentSummaryMetrics.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| metric_accumulation_level | |
| Field required [type=missing, input_value={'inputFile': 'picard_CAS...[], 'maxinsert': 100000}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool picard_CollectHsMetrics / 2.18.2 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectHsMetrics.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_ValidateSamFile / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_ValidateSamFile.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| ignore_warnings | |
| Input should be a valid boolean [type=bool_type, input_value='Fasle', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool picard_MarkDuplicatesWithMateCigar / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_MarkDuplicatesWithMateCigar.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_MergeBamAlignment / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_MergeBamAlignment.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| aligned_or_read1_and_read2.__absent__.aligned_bams | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| orientations | |
| Field required [type=missing, input_value={'reference_source': {}, ... 'add_mate_cigar': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool picard_CollectInsertSizeMetrics / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectInsertSizeMetrics.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_RevertOriginalBaseQualitiesAndAddMateCigar / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_RevertOriginalBaseQualitiesAndAddMateCigar.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_FixMateInformation / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_FixMateInformation.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_QualityScoreDistribution / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_QualityScoreDistribution.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_MeanQualityByCycle / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_MeanQualityByCycle.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_FastqToSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_FastqToSam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.fastq | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool picard_CollectGcBiasMetrics / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectGcBiasMetrics.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 2 test cases to validate for tool picard_artifact_metrics / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectSequencingArtifactsMetrics.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool picard_CleanSam / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CleanSam.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool picard_FilterSamReads / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_FilterSamReads.xml) | |
| Test Case 1: validation failed - Invalid parameter name found filter | |
| Test Case 2: validation failed - Invalid parameter name found filter | |
| Found 1 test cases to validate for tool picard_AddOrReplaceReadGroups / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_AddOrReplaceReadGroups.xml) | |
| Test Case 1: validation failed - Invalid parameter name found LB | |
| Found 3 test cases to validate for tool picard_SamToFastq / 2.18.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_SamToFastq.xml) | |
| Test Case 1: validation failed - Invalid parameter name found output_per_rg | |
| Test Case 2: validation failed - Invalid parameter name found output_per_rg | |
| Test Case 3: validation failed - Invalid parameter name found output_per_rg | |
| Found 1 test cases to validate for tool picard_EstimateLibraryComplexity / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_EstimateLibraryComplexity.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool picard_NormalizeFasta / 2.18.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_NormalizeFasta.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool picard_MarkDuplicates / 2.18.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_MarkDuplicates.xml) | |
| Test Case 1: validation failed - Invalid parameter name found comment | |
| Test Case 2: validation failed - Invalid parameter name found comment | |
| Test Case 3: validation failed - Invalid parameter name found comment | |
| Found 4 test cases to validate for tool picard_CollectRnaSeqMetrics / 2.18.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/picard/picard_CollectRnaSeqMetrics.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| gene_reference_source.__absent__.refFlat | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| gene_reference_source.__absent__.refFlat | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| gene_reference_source.__absent__.refFlat | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| gene_reference_source.__absent__.refFlat | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 21 test cases to validate for tool pygenomeTracks / 3.6 (@ /Users/jxc755/workspace/tools-iuc/tools/pygenometracks/pyGenomeTracks.xml) | |
| Test Case 1: validation failed - 15 validation errors for DynamicModelForTool | |
| tracks.3.track_file_style_conditional.chrom_states_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.6.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.8.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.9.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.10.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.12.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.12.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.12.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.14.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.14.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.14.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.16.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.16.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.16.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.2.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.hlines_track_option.color | |
| Value error, Invalid color value string format orange encountered.0 [type=value_error, input_value='orange', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.hlines_track_option.color | |
| Value error, Invalid color value string format purple encountered.0 [type=value_error, input_value='purple', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 3: validation failed - 15 validation errors for DynamicModelForTool | |
| tracks.2.track_file_style_conditional.chrom_states_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.5.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.5.track_file_style_conditional.bedgraph_track_option.color_negative.true.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.6.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.8.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.10.track_file_style_conditional.bigwig_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.11.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.11.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.12.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.12.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.13.track_file_style_conditional.gene_track_option.border_color_bed.manually.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.13.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.14.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.15.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - Invalid parameter name found tracks_1|track_file_style_conditional|summary_method | |
| Test Case 5: validation failed - 4 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validated | |
| Test Case 7: validation failed - 12 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.5.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.5.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.6.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 4 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 8 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.color_bed.manually.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.2.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.color_bed.manually.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 5 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.manually.color | |
| Value error, Invalid color value string format yellow encountered.0 [type=value_error, input_value='yellow', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 11: validated | |
| Test Case 12: validation failed - 1 validation error for DynamicModelForTool | |
| tracks.2.track_file_style_conditional.link_track_option.color_link.manually.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 13: validated | |
| Test Case 14: validation failed - 2 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 1.0}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.scale_bar_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 15: validation failed - 11 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.gene_track_option.bed_style.__absent__.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.gene_track_option.bed_style.tssarrow.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.gene_track_option.color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.gene_track_option.border_color_bed.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.gene_track_option.bed_style.tssarrow.bed_advanced.color_utr.__absent__.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 16: validation failed - Invalid parameter name found tracks_1|track_file_style_conditional|summary_method | |
| Test Case 17: validation failed - 9 validation errors for DynamicModelForTool | |
| tracks.0.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.1.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.2.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format green encountered.0 [type=value_error, input_value='green', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format green encountered.0 [type=value_error, input_value='green', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.5.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.6.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bedgraph_track_option.logScale_conditional.log2.y_axis_values | |
| Input should be a valid boolean [type=bool_type, input_value='original', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 18: validation failed - 5 validation errors for DynamicModelForTool | |
| tracks.1.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.2.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.bedgraph_track_option.color_negative.true.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 19: validation failed - 9 validation errors for DynamicModelForTool | |
| tracks.0.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.1.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format blue encountered.0 [type=value_error, input_value='blue', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.2.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.3.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format green encountered.0 [type=value_error, input_value='green', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format green encountered.0 [type=value_error, input_value='green', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.5.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.6.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bedgraph_track_option.color | |
| Value error, Invalid color value string format black encountered.0 [type=value_error, input_value='black', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.bedgraph_track_option.logScale_conditional.log2.y_axis_values | |
| Input should be a valid boolean [type=bool_type, input_value='original', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 20: validation failed - 4 validation errors for DynamicModelForTool | |
| tracks.3.track_file_style_conditional.link_track_option.color_link.__absent__.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.4.track_file_style_conditional.link_track_option.color_link.__absent__.color | |
| Value error, Invalid color value string format RdYlGn encountered.0 [type=value_error, input_value='RdYlGn', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.7.track_file_style_conditional.link_track_option.color_link.__absent__.color | |
| Value error, Invalid color value string format red encountered.0 [type=value_error, input_value='red', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| tracks.8.track_file_style_conditional.link_track_option.color_link.__absent__.color | |
| Value error, Invalid color value string format RdYlGn encountered.0 [type=value_error, input_value='RdYlGn', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Test Case 21: validation failed - 6 validation errors for DynamicModelForTool | |
| tracks.0.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.1.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.2.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.3.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.4.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tracks.5.track_file_style_conditional.scale_bar_option.color | |
| Field required [type=missing, input_value={'track_file_style_select...}, 'spacer_height': 0.5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool ngsutils_bam_filter / 0.5.9 (@ /Users/jxc755/workspace/tools-iuc/tools/ngsutils/bam_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool gvcftools_extract_variants / 0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gvcftools/extract_variants.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 3: validation failed - Invalid parameter name found advanced_options_selector | |
| Found 2 test cases to validate for tool qualimap_rnaseq / 2.2.2d+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/qualimap/qualimap_rnaseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool qualimap_multi_bamqc / 2.2.2d (@ /Users/jxc755/workspace/tools-iuc/tools/qualimap/qualimap_multi_bamqc.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool qualimap_counts / 2.2.2d (@ /Users/jxc755/workspace/tools-iuc/tools/qualimap/qualimap_counts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 5 test cases to validate for tool qualimap_bamqc / 2.2.2d+galaxy3 (@ /Users/jxc755/workspace/tools-iuc/tools/qualimap/qualimap_bamqc.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool iuc_pear / 0.9.6.1 (@ /Users/jxc755/workspace/tools-iuc/tools/pear/pear.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool socru / 2.1.7 (@ /Users/jxc755/workspace/tools-iuc/tools/socru/socru.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool kraken_taxonomy_report / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/kraken_taxonomy_report/kraken_taxonomy_report.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool velveth / 1.2.10.3 (@ /Users/jxc755/workspace/tools-iuc/tools/velvet/velveth.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| strand_specific | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inputs.0.input_type.paireds.input | |
| Field required [type=missing, input_value={'input_type_selector': '...', 'input2': 'R2.fastq'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| strand_specific | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| strand_specific | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool velvetg / 1.2.10.2 (@ /Users/jxc755/workspace/tools-iuc/tools/velvet/velvetg.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| read_trkg | |
| Input should be a valid boolean [type=bool_type, input_value='-read_trkg no', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 7 test cases to validate for tool anndata_import / 0.7.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/anndata/import.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.in.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validated | |
| Found 3 test cases to validate for tool anndata_export / 0.7.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/anndata/export.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| hd5_format.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 16 test cases to validate for tool anndata_inspect / 0.7.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/anndata/inspect.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validation failed - Invalid parameter name found inspect|chunk|list | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Test Case 14: validated | |
| Test Case 15: validated | |
| Test Case 16: validated | |
| Found 11 test cases to validate for tool anndata_manipulate / 0.7.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/anndata/manipulate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Found 3 test cases to validate for tool modify_loom / 0.7.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/anndata/modify_loom.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| which_add.__absent__.cols | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| which_add.__absent__.cols | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| which_add.__absent__.cols | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool star_fusion / 0.5.4-3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/star_fusion/star_fusion.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input_params.__absent__.chimeric_junction | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fasta_type.__absent__.ownFile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input_params.__absent__.chimeric_junction | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fasta_type.__absent__.ownFile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input_params.__absent__.chimeric_junction | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fasta_type.__absent__.ownFile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool fasta-stats / 1.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/fasta_stats/fasta-stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mash_screen / 2.3+galaxy3 (@ /Users/jxc755/workspace/tools-iuc/tools/mash/mash_screen.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| pool_input.__absent__.pool_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| pool_input.__absent__.pool_2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| queries_input_source.__absent__.queries | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| pool_input.__absent__.pool_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| pool_input.__absent__.pool_2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| queries_input_source.__absent__.queries | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| pool_input.__absent__.pool_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| pool_input.__absent__.pool_2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| queries_input_source.__absent__.queries | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 8 test cases to validate for tool mash_sketch / 2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/mash/mash_sketch.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found reads_assembly|reads_input|minimum_kmer_copies | |
| Test Case 3: validation failed - Invalid parameter name found reads_assembly|reads_input|target_coverage | |
| Test Case 4: validation failed - Invalid parameter name found reads_assembly|reads_input|genome_size | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 1 test cases to validate for tool presto_partition / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_partition.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool prestor_abseq3 / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/prestor_abseq3.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool presto_pairseq / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_pairseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 6 test cases to validate for tool presto_filterseq / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_filterseq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| cc.__absent__.n | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 0 test cases to validate for tool presto_buildconsensus / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_buildconsensus.xml) | |
| Found 1 test cases to validate for tool presto_parselog / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_parselog.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool presto_collapseseq / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_collapseseq.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool presto_maskprimers / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_maskprimers.xml) | |
| Test Case 1: validation failed - Invalid parameter name found command | |
| Test Case 2: validation failed - Invalid parameter name found command | |
| Test Case 3: validation failed - Invalid parameter name found command | |
| Test Case 4: validation failed - Invalid parameter name found command | |
| Found 1 test cases to validate for tool presto_alignsets / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_alignsets.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool presto_parseheaders / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_parseheaders.xml) | |
| Test Case 1: validation failed - Invalid parameter name found command | |
| Test Case 2: validation failed - Invalid parameter name found command | |
| Test Case 3: validation failed - Invalid parameter name found command | |
| Test Case 4: validation failed - Invalid parameter name found command | |
| Test Case 5: validation failed - Invalid parameter name found command | |
| Test Case 6: validation failed - Invalid parameter name found command | |
| Test Case 7: validation failed - Invalid parameter name found command | |
| Found 4 test cases to validate for tool presto_assemblepairs / 0.6.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/presto/presto_assemblepairs.xml) | |
| Test Case 1: validation failed - Invalid parameter name found command | |
| Test Case 2: validation failed - Invalid parameter name found command | |
| Test Case 3: validation failed - Invalid parameter name found command | |
| Test Case 4: validation failed - Invalid parameter name found command | |
| Found 1 test cases to validate for tool hyphy_bgm / 2.5.31+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_bgm.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hyphy_fade / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_fade.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hyphy_annotate / 2.5.31+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_annotate.xml) | |
| Test Case 1: validation failed - Invalid parameter name found multiple_hits | |
| Found 1 test cases to validate for tool hyphy_cfel / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_cfel.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hyphy_gard / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_gard.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hyphy_conv / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_conv.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| deletions | |
| Input should be a valid boolean [type=bool_type, input_value='Keep Deletions', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool hyphy_sm19 / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_sm19.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hyphy_absrel / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_absrel.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hyphy_strike_ambigs / 2.5.31 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_strike_ambigs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hyphy_busted / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_busted.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found branches | |
| Found 1 test cases to validate for tool hyphy_meme / 2.5.31+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_meme.xml) | |
| Test Case 1: validation failed - Invalid parameter name found branches | |
| Found 1 test cases to validate for tool hyphy_slac / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_slac.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool hyphy_relax / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_relax.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found srv_options | |
| Found 1 test cases to validate for tool hyphy_fubar / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_fubar.xml) | |
| Test Case 1: validation failed - Invalid parameter name found posterior | |
| Found 1 test cases to validate for tool hyphy_prime / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_prime.xml) | |
| Test Case 1: validation failed - Invalid parameter name found branches | |
| Found 1 test cases to validate for tool hyphy_fel / 2.5.31+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_fel.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool hyphy_summary / 1.2.0 (@ /Users/jxc755/workspace/tools-iuc/tools/hyphy/hyphy_summary.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| mode_conditional.__absent__.combined | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode_conditional.__absent__.labels | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| mode_conditional.__absent__.combined | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode_conditional.__absent__.labels | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| mode_conditional.__absent__.combined | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode_conditional.__absent__.labels | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| mode_conditional.__absent__.combined | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode_conditional.__absent__.labels | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool umi_tools_whitelist / 1.1.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/umi_tools/umi-tools_whitelist.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found use_cell_opts | |
| Test Case 3: validation failed - Invalid parameter name found use_cell_opts | |
| Test Case 4: validation failed - Invalid parameter name found bc_pattern | |
| Found 5 test cases to validate for tool umi_tools_group / 1.1.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/umi_tools/umi-tools_group.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 6 test cases to validate for tool umi_tools_extract / 1.1.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/umi_tools/umi-tools_extract.xml) | |
| Test Case 1: validation failed - Invalid parameter name found quality_selector | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found input_type_cond|paired_type | |
| Test Case 4: validation failed - Invalid parameter name found extract_method | |
| Test Case 5: validation failed - Invalid parameter name found extract_method | |
| Test Case 6: validation failed - Invalid parameter name found extract_method | |
| Found 7 test cases to validate for tool umi_tools_count / 1.1.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/umi_tools/umi-tools_counts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 7 test cases to validate for tool umi_tools_dedup / 1.1.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/umi_tools/umi-tools_dedup.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found bc|umi_tag | |
| Test Case 6: validation failed - Invalid parameter name found bc|umi_tag | |
| Test Case 7: validation failed - Invalid parameter name found bc|umi_tag | |
| Found 3 test cases to validate for tool qfilt / 1.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/qfilt/qfilt.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_data.__absent__.fastq | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_data.__absent__.fastq | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_data.__absent__.fastq | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool maxbin2 / 2.2.7+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/maxbin2/maxbin2.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| adv_cond.yes.plotmarker | |
| Input should be a valid boolean [type=bool_type, input_value='-plotmarker', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| intype_cond.rds.reassembly | |
| Input should be a valid boolean [type=bool_type, input_value='-reassembly', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool volcanoplot / 0.0.5 (@ /Users/jxc755/workspace/tools-iuc/tools/volcanoplot/volcanoplot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found label_select | |
| Test Case 3: validation failed - Invalid parameter name found label_select | |
| Found 1 test cases to validate for tool vg_deconstruct / 1.23.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vg/deconstruct.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool vg_view / 1.23.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vg/view.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool vg_convert / 1.23.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vg/convert.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool kma_map / 1.2.21+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/kma/kma_map.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool funannotate_compare / 1.8.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/funannotate/funannotate_compare.xml) | |
| Test Case 1: validation failed - Invalid parameter name found outputs | |
| Found 2 test cases to validate for tool funannotate_clean / 1.8.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/funannotate/funannotate_clean.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool funannotate_annotate / 1.8.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/funannotate/funannotate_annotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool funannotate_sort / 1.8.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/funannotate/funannotate_sort.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool funannotate_predict / 1.8.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/funannotate/funannotate_predict.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool bwameth / 0.2.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bwameth/bwameth.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| referenceSource.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| single_or_paired.__absent__.input_singles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| referenceSource.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| single_or_paired.__absent__.input_singles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool resize_coordinate_window / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/resize_coordinate_window/resize_coordinate_window.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool nextclade / 1.4.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/nextclade/nextclade.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool nextalign / 1.4.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/nextclade/nextalign.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool tximport / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/tximport/tximport.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_source | |
| Test Case 2: validation failed - Invalid parameter name found input_source | |
| Test Case 3: validation failed - Invalid parameter name found input_source | |
| Test Case 4: validation failed - Invalid parameter name found input_source | |
| Found 5 test cases to validate for tool ragtag / 2.1.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ragtag/ragtag.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 3 test cases to validate for tool last_al / 1205+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/last/lastal.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found lastal|Q | |
| Found 3 test cases to validate for tool last_db / 1205+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/last/lastdb.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found lastdb_advanced|seeds|u | |
| Test Case 3: validation failed - Invalid parameter name found lastdb|Q | |
| Found 1 test cases to validate for tool last_split / 1205+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/last/lastsplit.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool last_train / 1205+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/last/lasttrain.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool last_maf_convert / 1205+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/last/maf-convert.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool prokka / 1.14.6+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/prokka/prokka.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool genrich / 0.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/genrich/genrich.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| treatment.__absent__.input_treatment_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| treatment.__absent__.input_treatment_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| treatment.__absent__.input_treatment_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool stacks_ustacks / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_ustacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool stacks_sstacks / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_sstacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 0 test cases to validate for tool stacks_genotypes / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_genotypes.xml) | |
| Found 1 test cases to validate for tool stacks_stats / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_stats.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool stacks_populations / 1.46.1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_populations.xml) | |
| Found 3 test cases to validate for tool stacks_refmap / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_refmap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool stacks_denovomap / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_denovomap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool stacks_assembleperead / 1.46.1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_assembleperead.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool stacks_clonefilter / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_clonefilter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool stacks_cstacks / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_cstacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 7 test cases to validate for tool stacks_procrad / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_procrad.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool stacks_rxstacks / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_rxstacks.xml) | |
| Test Case 1: validation failed - Invalid parameter name found options_filtering|prune_haplo | |
| Found 1 test cases to validate for tool stacks_pstacks / 1.46.0 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks/stacks_pstacks.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool jcvi_gff_stats / 0.8.4 (@ /Users/jxc755/workspace/tools-iuc/tools/jcvi_gff_stats/jcvi_gff_stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool metagenomeseq_normalizaton / 1.16.0-0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/metagenomeseq/metagenomeseq_normalization.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| include_outputs | |
| Field required [type=missing, input_value={'input_abundance_file': ...og2': False, 'sl': 1000}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 8 test cases to validate for tool aegean_locuspocus / 0.16.0 (@ /Users/jxc755/workspace/tools-iuc/tools/aegean/locuspocus.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validation failed - Invalid parameter name found refine_options|refine_options|minoverlap | |
| Found 3 test cases to validate for tool aegean_gaeval / 0.16.0 (@ /Users/jxc755/workspace/tools-iuc/tools/aegean/gaeval.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found weights|epsion | |
| Test Case 3: validated | |
| Found 6 test cases to validate for tool aegean_parseval / 0.16.0 (@ /Users/jxc755/workspace/tools-iuc/tools/aegean/parseval.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool aegean_canongff3 / 0.16.0 (@ /Users/jxc755/workspace/tools-iuc/tools/aegean/canongff3.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool vcfanno / 0.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/vcfanno/vcfanno.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool addName / 0.2.0 (@ /Users/jxc755/workspace/tools-iuc/tools/add_input_name_as_column/add_input_name_as_column.xml) | |
| Test Case 1: validation failed - Invalid parameter name found contains_header | |
| Test Case 2: validation failed - Invalid parameter name found contains_header | |
| Found 2 test cases to validate for tool metaeuk_easy_predict / 5.34c21f2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/metaeuk/metaeuk_easy_predict.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool length_and_gc_content / 0.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/length_and_gc_content/get_length_and_gc_content.xml) | |
| Test Case 1: validation failed - Invalid parameter name found gtfSource | |
| Test Case 2: validation failed - Invalid parameter name found gtfSource | |
| Test Case 3: validation failed - Invalid parameter name found gtfSource | |
| Test Case 4: validation failed - Invalid parameter name found gtfSource | |
| Found 3 test cases to validate for tool trinity_run_de_analysis / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/run_de_analysis.xml) | |
| Test Case 1: validation failed - Invalid parameter name found method | |
| Test Case 2: validation failed - Invalid parameter name found method | |
| Test Case 3: validation failed - Invalid parameter name found method | |
| Found 1 test cases to validate for tool describe_samples / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/describe_samples.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool trinity_super_transcripts / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/super_transcripts.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool trinity / 2.9.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/trinity.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| pool.__absent__.inputs.__absent__.input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool trinity_abundance_estimates_to_matrix / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/abundance_estimates_to_matrix.xml) | |
| Test Case 1: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 2: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 3: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 4: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 5: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 6: validation failed - Invalid parameter name found cross_sample_norm | |
| Test Case 7: validation failed - Invalid parameter name found cross_sample_norm | |
| Found 1 test cases to validate for tool trinity_contig_exn50_statistic / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/contig_exn50_statistic.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool trinity_samples_qccheck / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/samples_qccheck.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool trinity_analyze_diff_expr / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/analyze_diff_expr.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool trinity_align_and_estimate_abundance / 2.9.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/align_and_estimate_abundance.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| inputs.__absent__.left_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| inputs.__absent__.right_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| inputs.__absent__.left_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| inputs.__absent__.right_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| inputs.__absent__.left_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| inputs.__absent__.right_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| inputs.__absent__.left_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| inputs.__absent__.right_input | |
| Field required [type=missing, input_value={'strand': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool trinity_filter_low_expr_transcripts / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/filter_low_expr_transcripts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool trinity_define_clusters_by_cutting_tree / 2.9.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/define_clusters_by_cutting_tree.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool trinity_gene_to_trans_map / 2.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinity/gene_to_trans_map.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool meme_meme / 5.0.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/meme/meme.xml) | |
| Test Case 1: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found options_type_selector | |
| Found 1 test cases to validate for tool meme_psp_gen / 5.0.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/meme/meme_psp_gen.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| non_commercial_use | |
| Input should be a valid boolean [type=bool_type, input_value='NON_COMMERCIAL_USE', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool meme_dreme / 5.0.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/meme/dreme.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found options_type_selector | |
| Found 3 test cases to validate for tool meme_fimo / 5.0.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/meme/fimo.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| fasta_type.__absent__.input_database | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| fasta_type.__absent__.input_database | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| fasta_type.__absent__.input_database | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool pycoqc / 2.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/pycoqc/pycoqc.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool trinotate / 3.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/trinotate/trinotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool newick_display / 1.6+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/newick_utils/newick_display.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| radial | |
| Input should be a valid boolean [type=bool_type, input_value='-r', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| radial | |
| Input should be a valid boolean [type=bool_type, input_value='-r', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool scpipe / 1.0.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/scpipe/scpipe.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| samples.__absent__.paired_format.__absent__.in1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| samples.__absent__.paired_format.__absent__.in2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| samples.__absent__.paired_format.__absent__.in1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| samples.__absent__.paired_format.__absent__.in2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| samples.__absent__.paired_format.__absent__.in1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| samples.__absent__.paired_format.__absent__.in2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| samples.__absent__.paired_format.__absent__.in1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| samples.__absent__.paired_format.__absent__.in2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool goslimmer / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/goenrichment/goslimmer.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool goenrichment / 2.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/goenrichment/goenrichment.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool tracy_assemble / 0.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tracy/tracy_assemble.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool tracy_align / 0.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tracy/tracy_align.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| optional_outputs | |
| Field required [type=missing, input_value={'reference': 'reference1...gnment': {}, 'trim': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| optional_outputs | |
| Field required [type=missing, input_value={'reference': 'reference1...gnment': {}, 'trim': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool tracy_decompose / 0.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tracy/tracy_decompose.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| optional_outputs | |
| Field required [type=missing, input_value={'genome': 'reference1.fa...gnment': {}, 'trim': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| optional_outputs | |
| Field required [type=missing, input_value={'genome': 'reference1.fa...gnment': {}, 'trim': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool tracy_basecall / 0.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tracy/tracy_basecall.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 10 test cases to validate for tool merlin / 1.1.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/merlin/merlin.xml) | |
| Test Case 1: validation failed - Invalid parameter name found allelefreq | |
| Test Case 2: validation failed - Invalid parameter name found allelefreq | |
| Test Case 3: validation failed - Invalid parameter name found allelefreq | |
| Test Case 4: validation failed - Invalid parameter name found allelefreq | |
| Test Case 5: validation failed - Invalid parameter name found allelefreq | |
| Test Case 6: validation failed - Invalid parameter name found allelefreq | |
| Test Case 7: validation failed - Invalid parameter name found allelefreq | |
| Test Case 8: validation failed - Invalid parameter name found allelefreq | |
| Test Case 9: validation failed - Invalid parameter name found allelefreq | |
| Test Case 10: validation failed - Invalid parameter name found allelefreq | |
| Found 8 test cases to validate for tool gffcompare / 0.11.2 (@ /Users/jxc755/workspace/tools-iuc/tools/gffcompare/gffcompare.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.No.refmap_tmap | |
| Field required [type=missing, input_value={'use_ref_annotation': 'No'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.No.refmap_tmap.0 | |
| Input should be 'tmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.No.refmap_tmap.0 | |
| Input should be 'tmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.Yes.refmap_tmap | |
| Field required [type=missing, input_value={'use_ref_annotation': 'Y...: 'gffcompare_in3.gtf'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 3 validation errors for DynamicModelForTool | |
| annotation.Yes.strict_match | |
| Input should be a valid boolean [type=bool_type, input_value='--strict-match', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| no_merge | |
| Input should be a valid boolean [type=bool_type, input_value='--no-merge', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| chr_stats | |
| Input should be a valid boolean [type=bool_type, input_value='--chr-stats', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 4 validation errors for DynamicModelForTool | |
| adv_output.C | |
| Input should be a valid boolean [type=bool_type, input_value='-C', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| adv_output.A | |
| Input should be a valid boolean [type=bool_type, input_value='-A', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| adv_output.X | |
| Input should be a valid boolean [type=bool_type, input_value='-X', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| adv_output.K | |
| Input should be a valid boolean [type=bool_type, input_value='-K', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| annotation.Yes.refmap_tmap.0.literal['refmap'] | |
| Input should be 'refmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| annotation.Yes.refmap_tmap.0.literal['tmap'] | |
| Input should be 'tmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 8: validation failed - 2 validation errors for DynamicModelForTool | |
| annotation.Yes.refmap_tmap.0.literal['refmap'] | |
| Input should be 'refmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| annotation.Yes.refmap_tmap.0.literal['tmap'] | |
| Input should be 'tmap' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 33 test cases to validate for tool cutadapt / 3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/cutadapt/cutadapt.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 13: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 14: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 15: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 16: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap... barcode={cut_prefix}'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 17: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 18: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 19: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 20: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 21: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 22: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 23: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 24: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 25: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 26: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...horten_end': '3prime'}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 27: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...horten_end': '5prime'}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 28: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 29: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 30: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 31: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 32: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 33: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={'r1': {'adapters': [], '...anywhere_adapters': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| output_selector | |
| Field required [type=missing, input_value={'library': {'r1': {'adap...{'shorten_options': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gemini_set_somatic / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_set_somatic.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool gemini_interactions / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_interactions.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool gemini_stats / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool gemini_gene_wise / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_gene_wise.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool gemini_query / 0.20.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_query.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found oformat|report|format | |
| Found 1 test cases to validate for tool gemini_windower / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_windower.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool gemini_db_info / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_db_info.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool gemini_fusions / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_fusions.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool gemini_load / 0.20.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_load.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 7 test cases to validate for tool gemini_inheritance / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_inheritance.xml) | |
| Test Case 1: validation failed - Invalid parameter name found report|report_selector | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 5 test cases to validate for tool gemini_annotate / 0.20.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_annotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool gemini_lof_sieve / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_lof_sieve.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool gemini_qc / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_qc.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool gemini_burden / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_burden.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool gemini_roh / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_roh.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool gemini_actionable_mutations / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_actionable_mutations.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool gemini_amend / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_amend.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool gemini_pathways / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/gemini/gemini_pathways.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool multiqc / 1.11+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/multiqc/multiqc.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found results_15|software_cond|input | |
| Test Case 4: validation failed - Invalid parameter name found results_0|software_cond|cc_select | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 1 test cases to validate for tool tsne / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/tsne/rtsne.xml) | |
| Test Case 1: validated | |
| Found 8 test cases to validate for tool plink / 1.9.b618+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/plink/plink.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| functions.filtering.sex_founder_filter.Yes.nonfounders | |
| Input should be a valid boolean [type=bool_type, input_value='--nonfounders', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| functions.data_manage.recode | |
| Input should be a valid boolean [type=bool_type, input_value='--recode', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 4 validation errors for DynamicModelForTool | |
| functions.stats.freq | |
| Input should be a valid boolean [type=bool_type, input_value='--freq', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.stats.hardy | |
| Input should be a valid boolean [type=bool_type, input_value='--hardy', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.stats.missing | |
| Input should be a valid boolean [type=bool_type, input_value='--missing', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.stats.het | |
| Input should be a valid boolean [type=bool_type, input_value='--het', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validation failed - 5 validation errors for DynamicModelForTool | |
| functions.association.logistic.Yes.genedrop | |
| Input should be a valid boolean [type=bool_type, input_value='genedrop', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.association.logistic.Yes.perm_count | |
| Input should be a valid boolean [type=bool_type, input_value='perm-count', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.association.logistic.Yes.hide_covar | |
| Input should be a valid boolean [type=bool_type, input_value='hide-covar', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.association.logistic.Yes.beta | |
| Input should be a valid boolean [type=bool_type, input_value='beta', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| functions.association.logistic.Yes.intercept | |
| Input should be a valid boolean [type=bool_type, input_value='intercept', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 8: validated | |
| Found 2 test cases to validate for tool alleyoop / 0.4.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/slamdunk/alleyoop.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Found 3 test cases to validate for tool slamdunk / 0.4.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/slamdunk/slamdunk.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 3: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool onto_tk_get_parent_terms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_parent_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_child_terms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_child_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_term_id_vs_term_def / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_term_id_vs_term_def.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_parent_terms_by_relationship_type / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_parent_terms_by_relationship_type.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_relationship_id_vs_relationship_namespace / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_relationship_id_vs_relationship_namespace.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_subontology_from / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_subontology_from.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_relationship_id_vs_relationship_def / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_relationship_id_vs_relationship_def.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_term_id_vs_term_def / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/term_id_vs_term_def.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_obo2owl / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/obo2owl.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_ancestor_terms / 1.45.1 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_ancestor_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_relationship_types / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_relationship_types.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_descendent_terms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_descendent_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_term_id_vs_term_name / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_term_id_vs_term_name.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_relationship_id_vs_relationship_name / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_relationship_id_vs_relationship_name.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_term_synonyms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_term_synonyms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_root_terms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_root_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_terms_by_relationship_type / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_terms_by_relationship_type.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_get_terms / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/get_terms.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool onto_tk_obo2rdf / 1.45.0 (@ /Users/jxc755/workspace/tools-iuc/tools/onto_toolkit/obo2rdf.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool spades / 3.12.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/spades/spades.xml) | |
| Found 3 test cases to validate for tool xpath / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/xpath/xpath.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 10 test cases to validate for tool bowtie2 / 2.4.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bowtie2/bowtie2_wrapper.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool raceid_filtnormconf / 0.2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raceid/raceid_filtnormconf.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 3 test cases to validate for tool raceid_trajectory / 0.2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raceid/raceid_trajectory.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool raceid_clustering / 0.2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raceid/raceid_clustering.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found tsne|use|rfseed_fr | |
| Test Case 3: validation failed - Invalid parameter name found tsne|use|rfseed_fr | |
| Found 6 test cases to validate for tool raceid_inspectclusters / 0.2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raceid/raceid_inspectclusters.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 5 test cases to validate for tool raceid_inspecttrajectory / 0.2.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raceid/raceid_inspecttrajectories.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found trjfid|basic|som|use|typer | |
| Test Case 5: validation failed - Invalid parameter name found trjfid|basic|som|use_genes|use|def | |
| Found 12 test cases to validate for tool stringtie / 2.1.7 (@ /Users/jxc755/workspace/tools-iuc/tools/stringtie/stringtie.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found fraction | |
| Test Case 3: validation failed - Invalid parameter name found use_guide | |
| Test Case 4: validation failed - Invalid parameter name found use_guide | |
| Test Case 5: validation failed - Invalid parameter name found use_guide | |
| Test Case 6: validation failed - Invalid parameter name found use_guide | |
| Test Case 7: validation failed - Invalid parameter name found use_guide | |
| Test Case 8: validation failed - Invalid parameter name found use_guide | |
| Test Case 9: validation failed - Invalid parameter name found use_guide | |
| Test Case 10: validation failed - Invalid parameter name found use_guide | |
| Test Case 11: validation failed - Invalid parameter name found use_guide | |
| Test Case 12: validated | |
| Found 3 test cases to validate for tool stringtie_merge / 2.1.7 (@ /Users/jxc755/workspace/tools-iuc/tools/stringtie/stringtie_merge.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 6 test cases to validate for tool sniffles / 1.0.12+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/sniffles/sniffles.xml) | |
| Test Case 1: validation failed - Invalid parameter name found output_format | |
| Test Case 2: validation failed - Invalid parameter name found output_format | |
| Test Case 3: validation failed - Invalid parameter name found output_format | |
| Test Case 4: validation failed - Invalid parameter name found output_format | |
| Test Case 5: validation failed - Invalid parameter name found output_format | |
| Test Case 6: validation failed - Invalid parameter name found output_format | |
| Found 7 test cases to validate for tool htseq_count / 0.9.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/htseq_count/htseq-count.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found samout | |
| Test Case 6: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 7: validation failed - Invalid parameter name found advanced_options_selector | |
| Found 7 test cases to validate for tool Add_a_column1 / 1.6 (@ /Users/jxc755/workspace/tools-iuc/tools/column_maker/column_maker.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 4 test cases to validate for tool barrnap / 1.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/barrnap/barrnap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 17 test cases to validate for tool hisat2 / 2.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hisat2/hisat2.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 11: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 12: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 13: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 14: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 15: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 16: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 17: validation failed - 1 validation error for DynamicModelForTool | |
| library.__absent__.input_1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool amplican / 1.14.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/amplican/amplican.xml) | |
| Test Case 1: validation failed - Invalid parameter name found alignment_options|scoring_matrix|mismatch scoring | |
| Test Case 2: validation failed - Invalid parameter name found alignment_options|scoring_matrix|mismatch scoring | |
| Test Case 3: validation failed - Invalid parameter name found alignment_options|scoring_matrix|mismatch scoring | |
| Test Case 4: validated | |
| Found 0 test cases to validate for tool ucsc_blat / 36 (@ /Users/jxc755/workspace/tools-iuc/tools/ucsc_blat/blat.xml) | |
| Found 3 test cases to validate for tool ruvseq / 1.26.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ruvseq/ruvseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found tximport_selector | |
| Found 0 test cases to validate for tool data_source_iris_tcga / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/data_source_iris_tcga/iris_tcga.xml) | |
| Found 3 test cases to validate for tool disco / 1.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/disco/disco.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| obg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| osg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| obg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| osg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| obg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| osg | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 6 test cases to validate for tool dada2_plotQualityProfile / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_plotQualityProfile.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 6 test cases to validate for tool dada2_plotComplexity / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_plotComplexity.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool dada2_assignTaxonomyAddspecies / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_assignTaxonomyAddspecies.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found addSpecies_cond|allowMultiple | |
| Found 3 test cases to validate for tool dada2_removeBimeraDenovo / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_removeBimeraDenovo.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 7 test cases to validate for tool dada2_filterAndTrim / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_filterAndTrim.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 3 test cases to validate for tool dada2_dada / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_dada.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool dada2_learnErrors / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_learnErrors.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool dada2_makeSequenceTable / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_makeSequenceTable.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool dada2_mergePairs / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_mergePairs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool dada2_seqCounts / 1.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/dada2/dada2_seqCounts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 2 test cases to validate for tool mlst_list / 2.19.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mlst/mlst_list.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 8 test cases to validate for tool mlst / 2.19.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mlst/mlst.xml) | |
| Test Case 1: validation failed - Invalid parameter name found advanced | |
| Test Case 2: validation failed - Invalid parameter name found advanced | |
| Test Case 3: validation failed - Invalid parameter name found advanced | |
| Test Case 4: validation failed - Invalid parameter name found advanced | |
| Test Case 5: validation failed - Invalid parameter name found advanced | |
| Test Case 6: validation failed - Invalid parameter name found advanced | |
| Test Case 7: validation failed - Invalid parameter name found advanced | |
| Test Case 8: validation failed - Invalid parameter name found advanced | |
| Found 2 test cases to validate for tool malt_run / 0.5.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/malt/malt_run.xml) | |
| Test Case 1: validation failed - Invalid parameter name found additional_outputs | |
| Test Case 2: validation failed - Invalid parameter name found additional_outputs | |
| Found 4 test cases to validate for tool mitos / 1.0.5+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/mitos/mitos.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| addoutputs | |
| Field required [type=missing, input_value={'input': 'NC_012920.fast...{}, 'advanced_prot': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| advanced.featuretypes | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| advanced.featuretypes | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| addoutputs | |
| Field required [type=missing, input_value={'input': 'NC_012920.fast...0}, 'advanced_prot': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool mitos2 / 2.0.6+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/mitos/mitos2.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| addoutputs | |
| Field required [type=missing, input_value={'input': 'NC_012920.fast...}, 'advanced_ncrna': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| advanced.featuretypes | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| addoutputs | |
| Field required [type=missing, input_value={'input': 'NC_012920.fast...}, 'advanced_ncrna': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| advanced.featuretypes | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool telescope_assign / 1.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/telescope/telescope_assign.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool homer_annotatePeaks / 4.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/homer/homer_annotatePeaks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 6 test cases to validate for tool homer_findMotifsGenome / 4.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/homer/homer_findMotifsGenome.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found mask | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool homer_gtf_to_annotations / 4.11+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/homer/homer_gtf_to_annotation.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| features | |
| Field required [type=missing, input_value={'gtf_file': 'small.gtf'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| features | |
| Field required [type=missing, input_value={'gtf_file': 'small.gtf',..., 'annTTSendOffset': 50}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bamutil_diff / 1.0.15+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bamutil/diff.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool bamutil_clip_overlap / 1.0.15+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bamutil/clip_overlap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| stats | |
| Input should be a valid boolean [type=bool_type, input_value='--stats', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool Interval2Maf1 / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/interval2maf/interval2maf.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool flair_correct / 1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/flair/flair_correct.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_selector_genome | |
| Test Case 2: validation failed - Invalid parameter name found ref_selector_genome | |
| Found 2 test cases to validate for tool flair_collapse / 1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/flair/flair_collapse.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_selector_genome | |
| Test Case 2: validation failed - Invalid parameter name found ref_selector_genome | |
| Found 2 test cases to validate for tool art_solid / 2014.11.03.0 (@ /Users/jxc755/workspace/tools-iuc/tools/art/art_solid.xml) | |
| Test Case 1: validation failed - Invalid parameter name found LEN_READ | |
| Test Case 2: validation failed - Invalid parameter name found choice | |
| Found 3 test cases to validate for tool art_454 / 2014.11.03.0 (@ /Users/jxc755/workspace/tools-iuc/tools/art/art_454.xml) | |
| Test Case 1: validation failed - Invalid parameter name found choice | |
| Test Case 2: validation failed - Invalid parameter name found choice | |
| Test Case 3: validation failed - Invalid parameter name found choice | |
| Found 2 test cases to validate for tool art_illumina / 2014.11.03.0 (@ /Users/jxc755/workspace/tools-iuc/tools/art/art_illumina.xml) | |
| Test Case 1: validation failed - Invalid parameter name found choice | |
| Test Case 2: validation failed - Invalid parameter name found choice | |
| Found 9 test cases to validate for tool deseq2 / 2.11.40.6+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/deseq2/deseq2.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 4: validation failed - 6 validation errors for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| output_options.output_selector.0.literal['pdf'] | |
| Input should be 'pdf' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normCounts'] | |
| Input should be 'normCounts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normVST'] | |
| Input should be 'normVST' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normRLog'] | |
| Input should be 'normRLog' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['many_contrasts'] | |
| Input should be 'many_contrasts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 5: validation failed - 6 validation errors for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| output_options.output_selector.0.literal['pdf'] | |
| Input should be 'pdf' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normCounts'] | |
| Input should be 'normCounts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normVST'] | |
| Input should be 'normVST' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normRLog'] | |
| Input should be 'normRLog' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['many_contrasts'] | |
| Input should be 'many_contrasts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 6: validation failed - 6 validation errors for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| output_options.output_selector.0.literal['pdf'] | |
| Input should be 'pdf' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normCounts'] | |
| Input should be 'normCounts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normVST'] | |
| Input should be 'normVST' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normRLog'] | |
| Input should be 'normRLog' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['many_contrasts'] | |
| Input should be 'many_contrasts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 7: validation failed - 6 validation errors for DynamicModelForTool | |
| select_data.group_tags.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| output_options.output_selector.0.literal['pdf'] | |
| Input should be 'pdf' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normCounts'] | |
| Input should be 'normCounts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normVST'] | |
| Input should be 'normVST' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normRLog'] | |
| Input should be 'normRLog' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['many_contrasts'] | |
| Input should be 'many_contrasts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| select_data.group_tags.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 9: validation failed - 6 validation errors for DynamicModelForTool | |
| select_data.__absent__.rep_factorName | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| output_options.output_selector.0.literal['pdf'] | |
| Input should be 'pdf' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normCounts'] | |
| Input should be 'normCounts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normVST'] | |
| Input should be 'normVST' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['normRLog'] | |
| Input should be 'normRLog' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| output_options.output_selector.0.literal['many_contrasts'] | |
| Input should be 'many_contrasts' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 2 test cases to validate for tool rna_quast / 2.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/rnaquast/rna_quast.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool ggplot2_violin / 3.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ggplot2/ggplot_violin.xml) | |
| Test Case 1: validation failed - Invalid parameter name found additional_output_format | |
| Found 2 test cases to validate for tool ggplot2_point / 3.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ggplot2/ggplot_point.xml) | |
| Test Case 1: validation failed - Invalid parameter name found additional_output_format | |
| Test Case 2: validation failed - Invalid parameter name found additional_output_format | |
| Found 1 test cases to validate for tool ggplot2_histogram / 3.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ggplot2/ggplot_histogram.xml) | |
| Test Case 1: validation failed - Invalid parameter name found additional_output_format | |
| Found 1 test cases to validate for tool ggplot2_heatmap / 3.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ggplot2/ggplot2_heatmap.xml) | |
| Test Case 1: validation failed - Invalid parameter name found transform | |
| Found 1 test cases to validate for tool ggplot2_pca / 3.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ggplot2/ggplot2_pca.xml) | |
| Test Case 1: validation failed - Invalid parameter name found additional_output_format | |
| Found 2 test cases to validate for tool ebi_metagenomics_run_downloader / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/ebi_tools/ebi_metagenomics_run_downloader.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool ebi_search_rest_results / 0.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/ebi_tools/ebi_search_rest_results.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 8 test cases to validate for tool bcftools_annotate / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_annotate.xml) | |
| Test Case 1: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 2: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 3: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 4: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 5: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 6: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 7: validation failed - Invalid parameter name found anno_fmt | |
| Test Case 8: validation failed - Invalid parameter name found anno_fmt | |
| Found 2 test cases to validate for tool bcftools_plugin_mendelian / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_mendelian.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| sec_plugin.mode | |
| Field required [type=missing, input_value={'trios': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| sec_plugin.mode | |
| Field required [type=missing, input_value={'trios': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool bcftools_plugin_dosage / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_dosage.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bcftools_isec / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_isec.xml) | |
| Test Case 1: validation failed - Invalid parameter name found nfiles | |
| Found 1 test cases to validate for tool bcftools_query_list_samples / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_query_list_samples.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool bcftools_convert_from_vcf / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_convert_from_vcf.xml) | |
| Test Case 1: validation failed - Invalid parameter name found convert_to | |
| Test Case 2: validation failed - Invalid parameter name found convert_to | |
| Test Case 3: validation failed - Invalid parameter name found convert_to | |
| Test Case 4: validation failed - Invalid parameter name found convert_to | |
| Test Case 5: validation failed - Invalid parameter name found convert_to | |
| Found 1 test cases to validate for tool bcftools_plugin_fill_an_ac / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_fill_an_ac.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool bcftools_csq / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_csq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| sec_required.gff_annot | |
| Field required [type=missing, input_value={'reference_source': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| sec_required.gff_annot | |
| Field required [type=missing, input_value={'reference_source': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool bcftools_plugin_fill_tags / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_fill_tags.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| sec_plugin.tags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| sec_plugin.tags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bcftools_reheader / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_reheader.xml) | |
| Test Case 1: validation failed - Invalid parameter name found header | |
| Test Case 2: validation failed - Invalid parameter name found samples_src | |
| Test Case 3: validation failed - Invalid parameter name found samples_src | |
| Found 6 test cases to validate for tool bcftools_mpileup / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_mpileup.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool bcftools_convert_to_vcf / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_convert_to_vcf.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 1 test cases to validate for tool bcftools_plugin_fixploidy / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_fixploidy.xml) | |
| Test Case 1: validation failed - Invalid parameter name found sex | |
| Found 1 test cases to validate for tool bcftools_query / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_query.xml) | |
| Test Case 1: validation failed - Invalid parameter name found format | |
| Found 2 test cases to validate for tool bcftools_plugin_color_chrs / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_color_chrs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool bcftools_plugin_setgt / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_setgt.xml) | |
| Test Case 1: validation failed - Invalid parameter name found target_gt | |
| Found 12 test cases to validate for tool bcftools_view / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_view.xml) | |
| Test Case 1: validation failed - Invalid parameter name found min_ac | |
| Test Case 2: validation failed - Invalid parameter name found min_ac | |
| Test Case 3: validation failed - Invalid parameter name found known_or_novel | |
| Test Case 4: validation failed - Invalid parameter name found known_or_novel | |
| Test Case 5: validation failed - Invalid parameter name found private | |
| Test Case 6: validation failed - Invalid parameter name found include | |
| Test Case 7: validation failed - Invalid parameter name found phased | |
| Test Case 8: validation failed - Invalid parameter name found phased | |
| Test Case 9: validation failed - Invalid parameter name found min_alleles | |
| Test Case 10: validation failed - Invalid parameter name found uncalled | |
| Test Case 11: validation failed - Invalid parameter name found exclude_types | |
| Test Case 12: validation failed - Invalid parameter name found phased | |
| Found 4 test cases to validate for tool bcftools_call / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_call.xml) | |
| Test Case 1: validation failed - Invalid parameter name found method | |
| Test Case 2: validation failed - Invalid parameter name found method | |
| Test Case 3: validation failed - Invalid parameter name found method | |
| Test Case 4: validation failed - Invalid parameter name found method | |
| Found 1 test cases to validate for tool bcftools_plugin_impute_info / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_impute_info.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool bcftools_norm / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_norm.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 1 test cases to validate for tool bcftools_plugin_missing2ref / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_missing2ref.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bcftools_plugin_counts / 1.10+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_counts.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool bcftools_concat / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_concat.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found naive | |
| Test Case 3: validation failed - Invalid parameter name found allow_overlaps | |
| Test Case 4: validation failed - Invalid parameter name found allow_overlaps | |
| Found 3 test cases to validate for tool bcftools_stats / 1.10+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 9 test cases to validate for tool bcftools_filter / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_filter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mode | |
| Test Case 2: validation failed - Invalid parameter name found exclude | |
| Test Case 3: validation failed - Invalid parameter name found exclude | |
| Test Case 4: validation failed - Invalid parameter name found exclude | |
| Test Case 5: validation failed - Invalid parameter name found exclude | |
| Test Case 6: validation failed - Invalid parameter name found exclude | |
| Test Case 7: validation failed - Invalid parameter name found exclude | |
| Test Case 8: validation failed - Invalid parameter name found exclude | |
| Test Case 9: validation failed - Invalid parameter name found include | |
| Found 2 test cases to validate for tool bcftools_roh / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_roh.xml) | |
| Test Case 1: validation failed - Invalid parameter name found AF_dflt | |
| Test Case 2: validation failed - Invalid parameter name found AF_dflt | |
| Found 6 test cases to validate for tool bcftools_merge / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_merge.xml) | |
| Test Case 1: validation failed - Invalid parameter name found force_samples | |
| Test Case 2: validation failed - Invalid parameter name found force_samples | |
| Test Case 3: validation failed - Invalid parameter name found force_samples | |
| Test Case 4: validation failed - Invalid parameter name found force_samples | |
| Test Case 5: validation failed - Invalid parameter name found force_samples | |
| Test Case 6: validation failed - Invalid parameter name found force_samples | |
| Found 1 test cases to validate for tool bcftools_plugin_frameshifts / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_frameshifts.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool bcftools_consensus / 1.10+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_consensus.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mask | |
| Test Case 2: validation failed - Invalid parameter name found mask | |
| Test Case 3: validation failed - Invalid parameter name found mask | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool bcftools_plugin_tag2tag / 1.10+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_plugin_tag2tag.xml) | |
| Test Case 1: validation failed - Invalid parameter name found replace | |
| Found 4 test cases to validate for tool bcftools_cnv / 1.10+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_cnv.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found score_usage|compute_on | |
| Found 1 test cases to validate for tool bcftools_gtcheck / 1.10 (@ /Users/jxc755/workspace/tools-iuc/tools/bcftools/bcftools_gtcheck.xml) | |
| Test Case 1: validation failed - Invalid parameter name found GTs_only | |
| Found 6 test cases to validate for tool sickle / 1.33.2 (@ /Users/jxc755/workspace/tools-iuc/tools/sickle/sickle.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| readtype.__absent__.input_single | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 0 test cases to validate for tool usher_matutils / 0.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/usher/matutils.xml) | |
| Found 12 test cases to validate for tool usher / 0.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/usher/usher.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validation failed - Invalid parameter name found retain_input_branch | |
| Found 11 test cases to validate for tool purge_dups / 1.2.5+galaxy4 (@ /Users/jxc755/workspace/tools-iuc/tools/purge_dups/purge_dups.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| function_select.pbcstat.pbcstat_options.primary_alignments | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| function_select.pbcstat.pbcstat_options.primary_alignments | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| function_select.pbcstat.output_options | |
| Field required [type=missing, input_value={'functions': 'pbcstat', ...0'}, 'section_hist': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| function_select.pbcstat.output_options | |
| Field required [type=missing, input_value={'functions': 'pbcstat', ...0'}, 'section_hist': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| function_select.ngscstat.output_options | |
| Field required [type=missing, input_value={'functions': 'ngscstat',...0'}, 'section_hist': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validated | |
| Test Case 10: validation failed - 4 validation errors for DynamicModelForTool | |
| function_select.get_seqs.advanced_options.coverage | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| function_select.get_seqs.advanced_options.haplotigs | |
| Input should be a valid boolean [type=bool_type, input_value='-a', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| function_select.get_seqs.advanced_options.end_trim | |
| Input should be a valid boolean [type=bool_type, input_value='-e', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| function_select.get_seqs.advanced_options.split | |
| Input should be a valid boolean [type=bool_type, input_value='-s', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 11: validation failed - 2 validation errors for DynamicModelForTool | |
| function_select.pbcstat.pbcstat_options.primary_alignments | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| function_select.pbcstat.output_options | |
| Field required [type=missing, input_value={'functions': 'pbcstat', ...max': 100, 'xmax': 100}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool hmmer_hmmconvert / 3.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmconvert.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hmmer_hmmfetch / 3.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmfetch.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hmmer_alimask / 3.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/alimask.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| range_type.__absent__.modelranges | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool hmmer_hmmscan / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmscan.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oformat | |
| Field required [type=missing, input_value={'input_hmm_conditional':...textw': True, 'seed': 4}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool hmmer_hmmsearch / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmsearch.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oformat | |
| Field required [type=missing, input_value={'hmmfile': 'globins4.hmm...textw': True, 'seed': 4}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| oformat.0.literal['tblout'] | |
| Input should be 'tblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['domtblout'] | |
| Input should be 'domtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['pfamtblout'] | |
| Input should be 'pfamtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 1 test cases to validate for tool hmmer_nhmmscan / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/nhmmscan.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oformat | |
| Field required [type=missing, input_value={'input_hmm_conditional':...textw': True, 'seed': 4}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool hmmer_phmmer / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/phmmer.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oformat | |
| Field required [type=missing, input_value={'seqfile': 'globins45.fa..., 'hssi': {}, 'seed': 4}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| oformat.0.literal['tblout'] | |
| Input should be 'tblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['domtblout'] | |
| Input should be 'domtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['pfamtblout'] | |
| Input should be 'pfamtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 2 test cases to validate for tool hmmer_hmmbuild / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmbuild.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hmmer_nhmmer / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/nhmmer.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| oformat.0.literal['tblout'] | |
| Input should be 'tblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['dfamtblout'] | |
| Input should be 'dfamtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['aliscoresout'] | |
| Input should be 'aliscoresout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 2 test cases to validate for tool hmmer_hmmemit / 3.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmemit.xml) | |
| Test Case 1: validation failed - Invalid parameter name found oformat_select | |
| Test Case 2: validation failed - Invalid parameter name found oformat_select | |
| Found 2 test cases to validate for tool hmmer_jackhmmer / 3.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/jackhmmer.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oformat | |
| Field required [type=missing, input_value={'seqfile': 'uniprot_matc... 'aeews': {}, 'seed': 4}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| oformat.0.literal['tblout'] | |
| Input should be 'tblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| oformat.0.literal['domtblout'] | |
| Input should be 'domtblout' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 1 test cases to validate for tool hmmer_hmmalign / 3.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/hmmer3/hmmalign.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool crosscontamination_barcode_filter / 0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/crosscontamination_barcode_filter/crosscontamination_barcode_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool circos_binlinks / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/binlinks.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool circos_interval_to_tile / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/tiles-from-interval.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool circos_wiggle_to_scatter / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/scatter-from-wiggle.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool circos_tableviewer / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/tableviewer.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| labels.segment.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| labels.ticks.color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool circos_resample / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/resample.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool circos / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/circos.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| ideogram.bands.band_stroke_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| plot_options.background.__absent__.background_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 11 validation errors for DynamicModelForTool | |
| ideogram.bands.band_stroke_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| plot_options.background.__absent__.background_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.0.plot_format.histogram.format_specific.fill_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.0.plot_format.histogram.format_specific.stroke_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.1.plot_format.scatter.format_specific.fill_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.1.plot_format.scatter.format_specific.stroke_color | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.2.plot_format.tile.format_specific.fill_color | |
| Field required [type=missing, input_value={'overflow': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_tdd.data.2.plot_format.tile.format_specific.stroke_color | |
| Field required [type=missing, input_value={'overflow': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sec_links.data.0.color | |
| Field required [type=missing, input_value={'radius': 0.59, 'data_so...nk_rule': {'rules': []}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| ticks.tick_group.0.color | |
| Field required [type=missing, input_value={'spacing': 1.0, 'ticks': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| ticks.tick_group.1.color | |
| Field required [type=missing, input_value={'spacing': 5.0, 'ticks':...yes', 'format': '%.1f'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool circos_wiggle_to_stacked / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/stack-histogram.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool circos_aln_to_links / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/alignments-to-links.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool circos_gc_skew / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/gc_skew.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool circos_bundlelinks / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/bundlelinks.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool circos_interval_to_text / 0.69.8+galaxy9 (@ /Users/jxc755/workspace/tools-iuc/tools/circos/text-from-interval.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool proteinortho_summary / 6.0.31+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/proteinortho/proteinortho_summary.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 7 test cases to validate for tool proteinortho / 6.0.31+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/proteinortho/proteinortho.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found cov | |
| Test Case 3: validation failed - Invalid parameter name found input_files_syn | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 3 test cases to validate for tool proteinortho_grab_proteins / 6.0.31+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/proteinortho/proteinortho_grab_proteins.xml) | |
| Test Case 1: validation failed - Invalid parameter name found querytype | |
| Test Case 2: validation failed - Invalid parameter name found querytype | |
| Test Case 3: validation failed - Invalid parameter name found querytype | |
| Found 10 test cases to validate for tool novoplasty / 4.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/novoplasty/novoplasty.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found reference | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Found 2 test cases to validate for tool zerone / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/zerone/zerone.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool column_order_header_sort / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/column_order_header_sort/column_order_header_sort.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool xmfa2gff3 / 2015_02_13.1 (@ /Users/jxc755/workspace/tools-iuc/tools/progressivemauve/xmfa2gff3.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool progressivemauve / 2015_02_13.0 (@ /Users/jxc755/workspace/tools-iuc/tools/progressivemauve/progressivemauve.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool CoverageReport2 / 0.0.4 (@ /Users/jxc755/workspace/tools-iuc/tools/coverage_report/CoverageReport.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool transdecoder / 5.5.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/transdecoder/transdecoder.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oo.out | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| oo.out | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool velvetoptimiser / 2.2.6+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/velvet_optimiser/velvetoptimiser.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool merqury / 1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/merqury/merqury.xml) | |
| Found 2 test cases to validate for tool mixcr_analyze / 3.0.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mixcr/mixcr_analyze.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool ggplot2_heatmap2 / 3.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/heatmap2/heatmap2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found cluster | |
| Test Case 2: validation failed - Invalid parameter name found cluster | |
| Found 1 test cases to validate for tool artic_guppyplex / 1.2.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/artic/artic_guppyplex.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool artic_minion / 1.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/artic/artic_minion.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 3: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool cast / 1.4.2 (@ /Users/jxc755/workspace/tools-iuc/tools/reshape2/cast.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool melt / 1.4.2 (@ /Users/jxc755/workspace/tools-iuc/tools/reshape2/melt.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool pangolin / 3.1.16+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/pangolin/pangolin.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| alignment | |
| Input should be a valid boolean [type=bool_type, input_value='--alignment', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool masigpro / 1.49.3.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/masigpro/masigpro.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| source.__absent__.edesign | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| source.__absent__.data | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| source.__absent__.edesign | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| source.__absent__.data | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| source.__absent__.edesign | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| source.__absent__.data | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 9 test cases to validate for tool idr_download_by_ids / 0.43 (@ /Users/jxc755/workspace/tools-iuc/tools/idr_download/idr_download_by_ids.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Test Case 2: validation failed - Invalid parameter name found source | |
| Test Case 3: validation failed - Invalid parameter name found source | |
| Test Case 4: validation failed - Invalid parameter name found source | |
| Test Case 5: validation failed - Invalid parameter name found source | |
| Test Case 6: validation failed - Invalid parameter name found source | |
| Test Case 7: validation failed - Invalid parameter name found source | |
| Test Case 8: validation failed - Invalid parameter name found source | |
| Test Case 9: validation failed - Invalid parameter name found source | |
| Found 1 test cases to validate for tool trimns / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/TrimNs/TrimNs.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool GeneBed_Maf_Fasta2 / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/genebed_maf_to_fasta/genebed_maf_to_fasta.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool obi_clean / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obiclean.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool obi_annotate / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obiannotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool obi_stat / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obistat.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool obi_tab / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obitab.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool obi_sort / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obisort.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool obi_ngsfilter / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/ngsfilter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool obi_uniq / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obiuniq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool obi_grep / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obigrep.xml) | |
| Test Case 1: validation failed - Invalid parameter name found options_inputtype | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool obi_convert / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/obiconvert.xml) | |
| Test Case 1: validation failed - Invalid parameter name found options_inputtype | |
| Found 2 test cases to validate for tool obi_illumina_pairend / 1.2.13 (@ /Users/jxc755/workspace/tools-iuc/tools/obitools/illuminapairedend.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 13 test cases to validate for tool minimap2 / 2.22+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/minimap2/minimap2.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 11: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 12: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 13: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool pe_histogram / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/pe_histogram/pe_histogram.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 8 test cases to validate for tool charts / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/charts/charts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 1 test cases to validate for tool iwtomics_loadandplot / 1.0.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/iwtomics/loadandplot.xml) | |
| Test Case 1: validation failed - Invalid parameter name found smoothing | |
| Found 1 test cases to validate for tool iwtomics_testandplot / 1.0.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/iwtomics/testandplot.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| regionssection.regions | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool iwtomics_plotwithscale / 1.0.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/iwtomics/plotwithscale.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| scalesection.thresholdontestscale | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 4 test cases to validate for tool pureclip / 1.0.4 (@ /Users/jxc755/workspace/tools-iuc/tools/pureclip/pureclip.xml) | |
| Test Case 1: validation failed - Invalid parameter name found crosslink_bed_stats | |
| Test Case 2: validation failed - Invalid parameter name found crosslink_bed_stats | |
| Test Case 3: validation failed - Invalid parameter name found motif_data_selector | |
| Test Case 4: validation failed - Invalid parameter name found bc_data_selector | |
| Found 4 test cases to validate for tool kofamscan / 1.3.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/kofamscan/kofamscan.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| ap.out | |
| Field required [type=missing, input_value={'f_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| ap.out | |
| Field required [type=missing, input_value={'f_cond': {'f_sel': 'mapper'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| ap.out | |
| Field required [type=missing, input_value={'f_cond': {'f_sel': 'mapper-one-line'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 8 test cases to validate for tool snpfreqplot / 1.0+galaxy3 (@ /Users/jxc755/workspace/tools-iuc/tools/snpfreqplot/snpfreqplot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 2 test cases to validate for tool tn93_readreduce / 1.0.6 (@ /Users/jxc755/workspace/tools-iuc/tools/tn93/readreduce.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool tn93_filter / 1.0.6 (@ /Users/jxc755/workspace/tools-iuc/tools/tn93/tn93_filter.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool tn93_cluster / 1.0.6 (@ /Users/jxc755/workspace/tools-iuc/tools/tn93/tn93_cluster.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool tn93 / 1.0.6 (@ /Users/jxc755/workspace/tools-iuc/tools/tn93/tn93.xml) | |
| Test Case 1: validation failed - Invalid parameter name found advanced | |
| Test Case 2: validation failed - Invalid parameter name found advanced | |
| Found 4 test cases to validate for tool lorikeet_spoligotype / 20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/lorikeet/lorikeet.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found source_type | |
| Found 1 test cases to validate for tool gfa_to_fa / 0.1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/gfa_to_fa/gfa_to_fa.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool humann_rna_dna_norm / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_rna_dna_norm.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool humann_split_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_split_table.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool humann_unpack_pathways / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_unpack_pathways.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| remove_taxonomy | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| remove_taxonomy | |
| Input should be a valid boolean [type=bool_type, input_value='--remove-taxonomy', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool humann_barplot / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_barplot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found out|None | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool humann_split_stratified_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_split_stratified_table.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool humann_renorm_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_renorm_table.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| update_snames | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| update_snames | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool humann_strain_profiler / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_strain_profiler.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool humann_join_tables / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_join_tables.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool humann_reduce_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_reduce_table.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool humann_regroup_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_regroup_table.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 6 test cases to validate for tool humann / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann.xml) | |
| Test Case 1: validation failed - Invalid parameter name found out|log_level | |
| Test Case 2: validation failed - 8 validation errors for DynamicModelForTool | |
| out.intermediate_temp.0.literal['metaphlan_bowtie2'] | |
| Input should be 'metaphlan_bowtie2' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['metaphlan_bugs_list'] | |
| Input should be 'metaphlan_bugs_list' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_alignment'] | |
| Input should be 'bowtie2_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_reduced_alignment'] | |
| Input should be 'bowtie2_reduced_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_unaligned'] | |
| Input should be 'bowtie2_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['custom_chocophlan_database'] | |
| Input should be 'custom_chocophlan_database' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_aligned'] | |
| Input should be 'diamond_aligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_unaligned'] | |
| Input should be 'diamond_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 3: validation failed - 8 validation errors for DynamicModelForTool | |
| out.intermediate_temp.0.literal['metaphlan_bowtie2'] | |
| Input should be 'metaphlan_bowtie2' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['metaphlan_bugs_list'] | |
| Input should be 'metaphlan_bugs_list' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_alignment'] | |
| Input should be 'bowtie2_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_reduced_alignment'] | |
| Input should be 'bowtie2_reduced_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_unaligned'] | |
| Input should be 'bowtie2_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['custom_chocophlan_database'] | |
| Input should be 'custom_chocophlan_database' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_aligned'] | |
| Input should be 'diamond_aligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_unaligned'] | |
| Input should be 'diamond_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 4: validation failed - 8 validation errors for DynamicModelForTool | |
| out.intermediate_temp.0.literal['metaphlan_bowtie2'] | |
| Input should be 'metaphlan_bowtie2' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['metaphlan_bugs_list'] | |
| Input should be 'metaphlan_bugs_list' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_alignment'] | |
| Input should be 'bowtie2_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_reduced_alignment'] | |
| Input should be 'bowtie2_reduced_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_unaligned'] | |
| Input should be 'bowtie2_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['custom_chocophlan_database'] | |
| Input should be 'custom_chocophlan_database' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_aligned'] | |
| Input should be 'diamond_aligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_unaligned'] | |
| Input should be 'diamond_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 5: validation failed - 8 validation errors for DynamicModelForTool | |
| out.intermediate_temp.0.literal['metaphlan_bowtie2'] | |
| Input should be 'metaphlan_bowtie2' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['metaphlan_bugs_list'] | |
| Input should be 'metaphlan_bugs_list' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_alignment'] | |
| Input should be 'bowtie2_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_reduced_alignment'] | |
| Input should be 'bowtie2_reduced_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_unaligned'] | |
| Input should be 'bowtie2_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['custom_chocophlan_database'] | |
| Input should be 'custom_chocophlan_database' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_aligned'] | |
| Input should be 'diamond_aligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_unaligned'] | |
| Input should be 'diamond_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 6: validation failed - 8 validation errors for DynamicModelForTool | |
| out.intermediate_temp.0.literal['metaphlan_bowtie2'] | |
| Input should be 'metaphlan_bowtie2' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['metaphlan_bugs_list'] | |
| Input should be 'metaphlan_bugs_list' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_alignment'] | |
| Input should be 'bowtie2_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_reduced_alignment'] | |
| Input should be 'bowtie2_reduced_alignment' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['bowtie2_unaligned'] | |
| Input should be 'bowtie2_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['custom_chocophlan_database'] | |
| Input should be 'custom_chocophlan_database' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_aligned'] | |
| Input should be 'diamond_aligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.intermediate_temp.0.literal['diamond_unaligned'] | |
| Input should be 'diamond_unaligned' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 1 test cases to validate for tool humann_associate / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_associate.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool humann_rename_table / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/humann/humann_rename_table.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| simplify | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| simplify | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| simplify | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool bioext_bealign / 0.20.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bioext/bealign.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_type | |
| Test Case 2: validation failed - Invalid parameter name found reference_type | |
| Test Case 3: validation failed - Invalid parameter name found reference_type | |
| Test Case 4: validation failed - Invalid parameter name found reference_type | |
| Found 2 test cases to validate for tool bioext_bam2msa / 0.20.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bioext/bam2msa.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool EMBOSS: pepwindowall74 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepwindowall.xml) | |
| Found 1 test cases to validate for tool EMBOSS: helixturnhelix43 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_helixturnhelix.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: biosed4 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_biosed.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: dotmatcher24 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_dotmatcher.xml) | |
| Found 1 test cases to validate for tool EMBOSS: btwisted5 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_btwisted.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: union105 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_union.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: maskfeat50 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_maskfeat.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: extractfeat34 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_extractfeat.xml) | |
| Found 0 test cases to validate for tool EMBOSS: chaos7 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_chaos.xml) | |
| Found 1 test cases to validate for tool EMBOSS: maskseq51 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_maskseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: shuffleseq87 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_shuffleseq.xml) | |
| Found 1 test cases to validate for tool EMBOSS: descseq21 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_descseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: infoseq46 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_infoseq.xml) | |
| Found 1 test cases to validate for tool EMBOSS: pasteseq66 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pasteseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: tcode97 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_tcode.xml) | |
| Found 0 test cases to validate for tool EMBOSS: skipseq91 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_skipseq.xml) | |
| Found 1 test cases to validate for tool EMBOSS: hmoment44 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_hmoment.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: extractseq35 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_extractseq.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: getorf42 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_getorf.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: primersearch81 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_primersearch.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: showfeat85 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_showfeat.xml) | |
| Found 1 test cases to validate for tool EMBOSS: seqret84 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_seqret.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: coderet13 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_coderet.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: syco96 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_syco.xml) | |
| Found 0 test cases to validate for tool EMBOSS: textsearch98 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_textsearch.xml) | |
| Found 1 test cases to validate for tool EMBOSS: iep45 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_iep.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: plotcon75 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_plotcon.xml) | |
| Found 0 test cases to validate for tool EMBOSS: pepinfo69 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepinfo.xml) | |
| Found 0 test cases to validate for tool EMBOSS: cirdna11 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cirdna.xml) | |
| Found 0 test cases to validate for tool EMBOSS: tmap99 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_tmap.xml) | |
| Found 1 test cases to validate for tool EMBOSS: einverted28 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_einverted.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: est2genome32 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_est2genome.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool EMBOSS: fuzznuc37 / 5.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_fuzznuc.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool EMBOSS: epestfind29 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_epestfind.xml) | |
| Found 1 test cases to validate for tool EMBOSS: newcpgseek58 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_newcpgseek.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: twofeat104 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_twofeat.xml) | |
| Found 2 test cases to validate for tool EMBOSS: backtranseq2 / 6.6.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_backtranseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool EMBOSS: octanol63 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_octanol.xml) | |
| Found 0 test cases to validate for tool EMBOSS: megamerger53 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_megamerger.xml) | |
| Found 1 test cases to validate for tool EMBOSS: degapseq20 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_degapseq.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: banana3 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_banana.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: pepnet70 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepnet.xml) | |
| Found 1 test cases to validate for tool EMBOSS: notseq61 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_notseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: supermatcher95 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_supermatcher.xml) | |
| Found 1 test cases to validate for tool EMBOSS: sixpack90 / 5.0.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_sixpack.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: merger54 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_merger.xml) | |
| Found 1 test cases to validate for tool EMBOSS: seqmatchall83 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_seqmatchall.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: transeq101 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_transeq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: checktrans9 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_checktrans.xml) | |
| Found 0 test cases to validate for tool EMBOSS: digest23 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_digest.xml) | |
| Found 1 test cases to validate for tool EMBOSS: pepstats71 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepstats.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: wobble108 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_wobble.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: water107 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_water.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: codcmp12 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_codcmp.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: trimest102 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_trimest.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: preg78 / 5.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_preg.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: etandem33 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_etandem.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: needle56 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_needle.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: dreg27 / 5.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_dreg.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: newseq59 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_newseq.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: patmatdb67 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_patmatdb.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: nthseq62 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_nthseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: charge8 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_charge.xml) | |
| Found 1 test cases to validate for tool EMBOSS: chips10 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_chips.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: revseq82 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_revseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: diffseq22 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_diffseq.xml) | |
| Found 1 test cases to validate for tool EMBOSS: msbar55 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_msbar.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: cai_custom6 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cai_custom.xml) | |
| Found 1 test cases to validate for tool EMBOSS: antigenic1 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_antigenic.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: dottup26 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_dottup.xml) | |
| Found 0 test cases to validate for tool EMBOSS: wordmatch110 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_wordmatch.xml) | |
| Found 0 test cases to validate for tool EMBOSS: fuzzpro38 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_fuzzpro.xml) | |
| Found 1 test cases to validate for tool EMBOSS: fuzztran39 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_fuzztran.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: cutseq18 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cutseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: oddcomp64 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_oddcomp.xml) | |
| Found 1 test cases to validate for tool EMBOSS: pepcoil68 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepcoil.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: polydot77 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_polydot.xml) | |
| Found 0 test cases to validate for tool EMBOSS: dan19 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_dan.xml) | |
| Found 0 test cases to validate for tool EMBOSS: dotpath25 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_dotpath.xml) | |
| Found 1 test cases to validate for tool EMBOSS: wordcount109 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_wordcount.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: sirna89 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_sirna.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mismatchpercent | |
| Found 0 test cases to validate for tool EMBOSS: pepwheel72 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepwheel.xml) | |
| Found 1 test cases to validate for tool EMBOSS: cusp17 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cusp.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: pepwindow73 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_pepwindow.xml) | |
| Found 1 test cases to validate for tool EMBOSS: cpgreport16 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cpgreport.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: sigcleave88 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_sigcleave.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: freak36 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_freak.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: equicktandem31 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_equicktandem.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: noreturn60 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_noreturn.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: splitter92 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_splitter.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: compseq14 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_compseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: isochore47 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_isochore.xml) | |
| Found 1 test cases to validate for tool EMBOSS: geecee41 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_geecee.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: prettyseq80 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_prettyseq.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: prettyplot79 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_prettyplot.xml) | |
| Found 1 test cases to validate for tool EMBOSS: trimseq103 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_trimseq.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: tranalign100 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_tranalign.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: cpgplot15 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cpgplot.xml) | |
| Found 1 test cases to validate for tool EMBOSS: cai6 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_cai.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: lindna48 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_lindna.xml) | |
| Found 1 test cases to validate for tool EMBOSS: garnier40 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_garnier.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: palindrome65 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_palindrome.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: marscan49 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_marscan.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool EMBOSS: plotorf76 / 5.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_plotorf.xml) | |
| Found 0 test cases to validate for tool EMBOSS: vectorstrip106 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_vectorstrip.xml) | |
| Found 1 test cases to validate for tool EMBOSS: matcher52 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_matcher.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool EMBOSS: newcpgreport57 / 5.0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/emboss_5/emboss_newcpgreport.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool beagle / 5.2_21Apr21.304+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/beagle/beagle.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool bellerophon / 1.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bellerophon/bellerophon.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mothur_biom_info / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/biom.info.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool mothur_split_groups / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/split.groups.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_count_groups / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/count.groups.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found source | |
| Found 2 test cases to validate for tool mothur_make_lookup / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.lookup.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference.__absent__.template | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| reference.__absent__.template | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_dist_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/dist.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_sffinfo / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/sffinfo.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found add | |
| Found 1 test cases to validate for tool mothur_cluster_classic / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/cluster.classic.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool mothur_remove_rare / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.rare.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_list_otulabels / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/list.otulabels.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...orest', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_primer_design / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/primer.design.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool mothur_cluster / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/cluster.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool mothur_get_sharedseqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.sharedseqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={'seqsfrom': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool mothur_merge_groups / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/merge.groups.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| design.__absent__.design_dataset | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| design.__absent__.design_dataset | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| design.__absent__.design_dataset | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| design.__absent__.design_dataset | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| design.__absent__.design_dataset | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_phylotype / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/phylotype.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'taxonomy': 'abrecovery....onomy', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_rename_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/rename.seqs.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool mothur_get_label / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.label.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool mothur_tree_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/tree.shared.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'input': {'subsampling': {}}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={'subsampling': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'input': {'subsampling': {}}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_lefse / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/lefse.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool mothur_pre_cluster / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/pre.cluster.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool mothur_make_contigs / 1.39.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.contigs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 3 test cases to validate for tool mothur_make_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.shared.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| intype.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.group | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| intype.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.group | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| intype.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.group | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| intype.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_indicator / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/indicator.xml) | |
| Test Case 1: validation failed - Invalid parameter name found havedesign | |
| Test Case 2: validation failed - Invalid parameter name found havedesign | |
| Test Case 3: validation failed - Invalid parameter name found havedesign | |
| Test Case 4: validation failed - Invalid parameter name found havedesign | |
| Found 1 test cases to validate for tool mothur_chop_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chop.seqs.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool mothur_chimera_vsearch / 1.39.5.2 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.vsearch.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool mothur_sort_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/sort.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 2 test cases to validate for tool mothur_homova / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/homova.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| sets | |
| Field required [type=missing, input_value={'dist': 'amazon.dist', '...esign', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_make_design / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.design.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_get_group / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.group.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_taxonomy_to_krona / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/taxonomy-to-krona.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mothur_fastq_info / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/fastq.info.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| oligo.yes.oligos | |
| Field required [type=missing, input_value={'add': 'yes'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| oligo.yes.oligos | |
| Field required [type=missing, input_value={'add': 'yes'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_get_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| dups | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool mothur_chimera_ccode / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.ccode.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_remove_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| dups | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| dups | |
| Input should be a valid boolean [type=bool_type, input_value=',dups=false', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Found 4 test cases to validate for tool mothur_dist_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/dist.shared.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...g': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...g': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...g': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...quare', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.mothur.sh...quare', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_chimera_perseus / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.perseus.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool mothur_cluster_split / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/cluster.split.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| splitby.__absent__.matrix.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| splitby.__absent__.matrix.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_corr_axes / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/corr.axes.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_make_fastq / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.fastq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_pairwise_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/pairwise.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| countends | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| countends | |
| Input should be a valid boolean [type=bool_type, input_value='countends=false,', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool mothur_classify_otu / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/classify.otu.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list',...x': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_anosim / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/anosim.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool mothur_get_lineage / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.lineage.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_rarefaction_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/rarefaction.shared.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_chimera_uchime / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.uchime.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| template.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_merge_files / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/merge.files.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| merge.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_summary_qual / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/summary.qual.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_shhh_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/shhh.seqs.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool mothur_split_abund / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/split.abund.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| search.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| search.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| search.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| search.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| search.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_collect_single / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/collect.single.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_pcoa / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/pcoa.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool mothur_make_biom / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.biom.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...c': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| groups | |
| Field required [type=missing, input_value={'otu': 'final.tx.1.subsa...c': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_remove_otulabels / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.otulabels.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_heatmap_bin / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/heatmap.bin.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_remove_otus / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.otus.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_summary_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/summary.shared.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.mothur.sh...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.mothur.sh...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.mothur.sh...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_otu_hierarchy / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/otu.hierarchy.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_get_otus / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.otus.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found label | |
| Found 2 test cases to validate for tool mothur_libshuff / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/libshuff.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| groups | |
| Field required [type=missing, input_value={'dist': 'amazon.dist', '...m': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - Invalid parameter name found form2 | |
| Found 3 test cases to validate for tool mothur_unique_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/unique.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool mothur_metastats / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/metastats.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...sign2', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sets | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...sign2', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...sign2', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_mantel / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/mantel.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_phylo_diversity / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/phylo.diversity.xml) | |
| Test Case 1: validation failed - Invalid parameter name found use | |
| Test Case 2: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_chimera_slayer / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.slayer.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_count_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/count.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found use | |
| Test Case 3: validation failed - Invalid parameter name found use | |
| Test Case 4: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_sens_spec / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/sens.spec.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| matrix.__absent__.dist | |
| Field required [type=missing, input_value={'method_name': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| matrix.__absent__.dist | |
| Field required [type=missing, input_value={'method_name': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_parse_list / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/parse.list.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mothur_summary_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/summary.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool mothur_otu_association / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/otu.association.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_pca / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/pca.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_filter_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/filter.shared.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mothur_pcr_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/pcr.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| keepdots | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| keepdots | |
| Input should be a valid boolean [type=bool_type, input_value='keepdots=false,', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - Invalid parameter name found method | |
| Found 1 test cases to validate for tool mothur_cluster_fragments / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/cluster.fragments.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_nmds / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/nmds.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_mimarks_attributes / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/mimarks.attributes.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_shhh_flows / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/shhh.flows.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Found 2 test cases to validate for tool mothur_rarefaction_single / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/rarefaction.single.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_amova / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/amova.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_deunique_tree / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/deunique.tree.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_parsimony / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/parsimony.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool mothur_deunique_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/deunique.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| inputtype.__absent__.names | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| inputtype.__absent__.names | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| inputtype.__absent__.names | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_cooccurrence / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/cooccurrence.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_chimera_pintail / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.pintail.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_collect_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/collect.shared.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool mothur_trim_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/trim.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found add | |
| Test Case 4: validation failed - Invalid parameter name found add | |
| Test Case 5: validation failed - Invalid parameter name found add2 | |
| Found 2 test cases to validate for tool mothur_get_coremicrobiome / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.coremicrobiome.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found group | |
| Found 3 test cases to validate for tool mothur_heatmap_sim / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/heatmap.sim.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.calc | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.calc | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.calc | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool mothur_summary_single / 1.39.5.2 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/summary.single.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared... False, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared... False, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.rabund...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| calc | |
| Field required [type=missing, input_value={'otu': 'amazon.an.rabund...e': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_list_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/list.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| search.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_remove_dists / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.dists.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_get_otulist / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.otulist.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_merge_count / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/merge.count.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool mothur_remove_lineage / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.lineage.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| file.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_get_communitytype / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.communitytype.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found method | |
| Found 2 test cases to validate for tool mothur_align_check / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/align.check.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Test Case 2: validation failed - Invalid parameter name found source | |
| Found 4 test cases to validate for tool mothur_get_groups / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.groups.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_unifrac_unweighted / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/unifrac.unweighted.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_venn / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/venn.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.calc | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.calc | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.label | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_merge_sfffiles / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/merge.sfffiles.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_bin_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/bin.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'fasta': 'amazon.fasta',....list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_normalize_shared / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/normalize.shared.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool mothur_chimera_bellerophon / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.bellerophon.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_seq_error / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/seq.error.xml) | |
| Test Case 1: validation failed - Invalid parameter name found template | |
| Test Case 2: validation failed - Invalid parameter name found template | |
| Found 1 test cases to validate for tool mothur_merge_taxsummary / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/merge.taxsummary.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_chimera_check / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/chimera.check.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.reference | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_filter_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/filter.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_get_rabund / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.rabund.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_clearcut / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/clearcut.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_get_sabund / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.sabund.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 6 test cases to validate for tool mothur_screen_seqs / 1.39.5.1 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/screen.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| optimize | |
| Field required [type=missing, input_value={'fasta': 'Mock_S280_L001...p': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| optimize | |
| Field required [type=missing, input_value={'fasta': 'amazon.fasta',...p': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| optimize | |
| Field required [type=missing, input_value={'fasta': 'Mock_S280_L001...p': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| optimize | |
| Field required [type=missing, input_value={'fasta': 'Mock_S280_L001...p': {}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_reverse_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/reverse.seqs.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_trim_flows / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/trim.flows.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found add | |
| Found 6 test cases to validate for tool mothur_get_oturep / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.oturep.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.list',...': {}}, 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| method_condition.__absent__.matrix_condition.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| method_condition.__absent__.matrix_condition.__absent__.nameOrCount | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_make_sra / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.sra.xml) | |
| Test Case 1: validated | |
| Found 8 test cases to validate for tool mothur_sub_sample / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/sub.sample.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.otu | |
| Field required [type=missing, input_value={'use_group': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_degap_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/degap.seqs.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mothur_get_dists / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.dists.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.dist | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool mothur_unifrac_weighted / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/unifrac.weighted.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_get_mimarkspackage / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.mimarkspackage.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_classify_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/classify.seqs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.template | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.template | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| alignment.__absent__.template | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mothur_classify_tree / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/classify.tree.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mothur_consensus_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/consensus.seqs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found use | |
| Found 2 test cases to validate for tool mothur_summary_tax / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/summary.tax.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tax.__absent__.taxonomy | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool mothur_make_group / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.group.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| method.__absent__.fasta_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| method.__absent__.fasta_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| method.__absent__.fasta_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool mothur_align_seqs / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/align.seqs.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Test Case 2: validation failed - Invalid parameter name found source | |
| Test Case 3: validation failed - Invalid parameter name found source | |
| Test Case 4: validation failed - Invalid parameter name found source | |
| Test Case 5: validation failed - Invalid parameter name found source | |
| Found 2 test cases to validate for tool mothur_create_database / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/create.database.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mothur_get_otulabels / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.otulabels.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| infile.__absent__.otu | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_make_lefse / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/make.lefse.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool mothur_remove_groups / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/remove.groups.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| groupnames.__absent__.groups | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mothur_get_relabund / 1.39.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/mothur/get.relabund.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| label | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| groups | |
| Field required [type=missing, input_value={'otu': 'amazon.an.shared', 'savelog': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool cwpair2 / 1.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/cwpair2/cwpair2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found threshold_format | |
| Test Case 2: validation failed - Invalid parameter name found threshold_format | |
| Found 3 test cases to validate for tool mitobim / 1.9.1 (@ /Users/jxc755/workspace/tools-iuc/tools/mitobim/mitobim.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 11 test cases to validate for tool limma_voom / 3.48.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/limma_voom/limma_voom.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 8: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 9: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 10: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 11: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| cont.__absent__.rep_contrast | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool basil / 1.2.0 (@ /Users/jxc755/workspace/tools-iuc/tools/basil/basil.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool td / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/fsd/td.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool fsd_regions / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/fsd/fsd_regions.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool fsd / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/fsd/fsd.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool fsd_beforevsafter / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/fsd/fsd_beforevsafter.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool sarscov2formatter / 0.5.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/sarscov2formatter/sarscov2formatter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source_choice | |
| Found 4 test cases to validate for tool chromeister / 1.5.a (@ /Users/jxc755/workspace/tools-iuc/tools/chromeister/chromeister.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| grid | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| grid | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| pngevents | |
| Input should be a valid boolean [type=bool_type, input_value='pngevents', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool irissv / 1.0.4+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/irissv/irissv.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool graphembed / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/graphembed/graphembed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found random_state | |
| Found 1 test cases to validate for tool repeatmodeler / 2.0.2a+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/repeatmodeler/repeatmodeler.xml) | |
| Test Case 1: validation failed - Invalid parameter name found name | |
| Found 1 test cases to validate for tool seq2hla / 2.2.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/seq2hla/seq2hla.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool mageck_mle / 0.5.9.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/mageck/mageck_mle.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| samples.__absent__.design_matrix | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| samples.__absent__.design_matrix | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool mageck_gsea / 0.5.9.2 (@ /Users/jxc755/workspace/tools-iuc/tools/mageck/mageck_gsea.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mageck_pathway / 0.5.9.2 (@ /Users/jxc755/workspace/tools-iuc/tools/mageck/mageck_pathway.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ranking_column | |
| Found 4 test cases to validate for tool mageck_count / 0.5.9.2.4 (@ /Users/jxc755/workspace/tools-iuc/tools/mageck/mageck_count.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.sample | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.sgrna_library_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.sample | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.sgrna_library_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.sample | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.sgrna_library_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.sample | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.sgrna_library_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool mageck_test / 0.5.9.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/mageck/mageck_test.xml) | |
| Test Case 1: validation failed - Invalid parameter name found treatment_id | |
| Test Case 2: validation failed - Invalid parameter name found treatment_id | |
| Found 1 test cases to validate for tool tag_pileup_frequency / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/tag_pileup_frequency/tag_pileup_frequency.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool enasearch_retrieve_analysis_report / 0.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/enasearch/enasearch_retrieve_analysis_report.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 0 test cases to validate for tool enasearch_search_data / 0.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/enasearch/enasearch_search_data.xml) | |
| Found 3 test cases to validate for tool enasearch_retrieve_data / 0.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/enasearch/enasearch_retrieve_data.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool enasearch_retrieve_run_report / 0.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/enasearch/enasearch_retrieve_run_report.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool enasearch_retrieve_taxons / 0.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/enasearch/enasearch_retrieve_taxons.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool fasta_nucleotide_color_plot / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/fasta_nucleotide_color_plot/fasta_nucleotide_color_plot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found color_a | |
| Found 4 test cases to validate for tool interproscan / 5.52-86.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/interproscan/interproscan.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool genomescope / 2.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/genomescope/genomescope.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool msaboot / 0.1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/msaboot/msaboot.xml) | |
| Test Case 1: validated | |
| Found 8 test cases to validate for tool abricate / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/abricate/abricate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found no_header | |
| Test Case 4: validation failed - Invalid parameter name found db | |
| Test Case 5: validation failed - Invalid parameter name found db | |
| Test Case 6: validation failed - Invalid parameter name found min_dna_id | |
| Test Case 7: validation failed - Invalid parameter name found min_cov | |
| Test Case 8: validated | |
| Found 1 test cases to validate for tool abricate_summary / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/abricate/abricate_summary.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool abricate_list / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/abricate/abricate_list.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool schicexplorer_schicclusterminhash / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicClusterMinHash.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicconsensusmatrices / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicConsensusMatrices.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicinfo / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicInfo.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool schicexplorer_schicclustersvl / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicClusterSVL.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool schicexplorer_schicplotconsensusmatrices / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicPlotConsensusMatrices.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool schicexplorer_schiccreatebulkmatrix / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicCreateBulkMatrix.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicadjustmatrix / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicAdjustMatrix.xml) | |
| Test Case 1: validation failed - Invalid parameter name found clusterMethod_selector | |
| Found 1 test cases to validate for tool schicexplorer_schicmergetoscool / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicMergeToSCool.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool schicexplorer_schiccluster / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicCluster.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool schicexplorer_schicmergematrixbins / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicMergeMatrixBins.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicplotclusterprofiles / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicPlotClusterProfiles.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicdemultiplex / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicDemultiplex.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool schicexplorer_schiccorrectmatrices / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicCorrectMatrices.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicqualitycontrol / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicQualityControl.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool schicexplorer_schicclustercompartments / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicClusterCompartments.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool schicexplorer_schicnormalize / 4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/schicexplorer/scHicNormalize.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool transit_tn5gaps / 3.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/transit/transit_tn5gaps.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gff_to_prot / 3.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/transit/convert_gff.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool transit_resampling / 3.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/transit/transit_resampling.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool transit_gumbel / 3.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/transit/transit_gumbel.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool transit_hmm / 3.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/transit/transit_hmm.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool hamronize_summarize / 1.0.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hamronization/hamronize_summarize.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool hamronize_tool / 1.0.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/hamronization/hamronize_tool.xml) | |
| Test Case 1: validation failed - Invalid parameter name found tool | |
| Test Case 2: validation failed - Invalid parameter name found tool | |
| Test Case 3: validation failed - Invalid parameter name found tool | |
| Test Case 4: validation failed - Invalid parameter name found tool | |
| Found 5 test cases to validate for tool jellyfish / 2.3.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/jellyfish/jellyfish.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| commands.__absent__.canonical | |
| Input should be a valid boolean [type=bool_type, input_value='--canonical', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| commands.__absent__.canonical | |
| Input should be a valid boolean [type=bool_type, input_value='--canonical', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| commands.__absent__.text | |
| Input should be a valid boolean [type=bool_type, input_value='text', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| commands.histo.full | |
| Input should be a valid boolean [type=bool_type, input_value='--full', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| commands.dump.format.column.tab | |
| Input should be a valid boolean [type=bool_type, input_value='--tab', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool minia / 3.2.4 (@ /Users/jxc755/workspace/tools-iuc/tools/minia/minia.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool galaxy_intermine_exchange / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/intermine_galaxy_exchange/intermine_galaxy_exchange.xml) | |
| Test Case 1: validation failed - Invalid parameter name found forganism_column | |
| Found 3 test cases to validate for tool seqtk_sample / 1.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_sample.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool seqtk_mergepe / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_mergepe.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_subseq / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_subseq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| source.__absent__.in_bed | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| source.__absent__.in_bed | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool seqtk_mutfa / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_mutfa.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_seq / 1.3.3 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_seq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_dropse / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_dropse.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_listhet / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_listhet.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_comp / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_comp.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_randbase / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_randbase.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_fqchk / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_fqchk.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_hety / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_hety.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool seqtk_cutN / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_cutN.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool seqtk_trimfq / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_trimfq.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mode_select | |
| Test Case 2: validation failed - Invalid parameter name found mode_select | |
| Test Case 3: validation failed - Invalid parameter name found mode_select | |
| Found 3 test cases to validate for tool seqtk_mergefa / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/seqtk/seqtk_mergefa.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool varscan_copynumber / 2.4.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/varscan/varscan_copynumber.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool varscan_mpileup / 2.4.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/varscan/varscan_mpileup.xml) | |
| Test Case 1: validated | |
| Found 8 test cases to validate for tool varscan_somatic / 2.4.3.6 (@ /Users/jxc755/workspace/tools-iuc/tools/varscan/varscan_somatic.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 3 test cases to validate for tool spyboat / 0.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/spyboat/spyboat.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 7 test cases to validate for tool busco / 5.2.2+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/busco/busco.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 1 test cases to validate for tool fermi2 / 0.14.dev1 (@ /Users/jxc755/workspace/tools-iuc/tools/fermikit/fermi2.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool fermikit_variants / 0.14.dev1 (@ /Users/jxc755/workspace/tools-iuc/tools/fermikit/fermikit_run_calling.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_genome_source | |
| Found 1 test cases to validate for tool instrain_compare / 1.5.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/instrain/instrain_compare.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool instrain_profile / 1.5.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/instrain/instrain_profile.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 8 test cases to validate for tool iedb_api / 2.15.2 (@ /Users/jxc755/workspace/tools-iuc/tools/iedb_api/iedb_api.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| prediction.mhci.lengths | |
| Field required [type=missing, input_value={'tool': 'mhci', 'method'...text': 'HLA-A*01:01,9'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| prediction.mhci.lengths | |
| Field required [type=missing, input_value={'tool': 'mhci', 'method'...le': 'alleles_len.tsv'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| prediction.processing.lengths | |
| Field required [type=missing, input_value={'tool': 'processing', 'm...01:01,8 HLA-A*02:01,9'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| prediction.mhcnp.lengths | |
| Field required [type=missing, input_value={'tool': 'mhcnp', 'method...text': 'HLA-A*02:01,9'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 4 test cases to validate for tool gubbins / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/gubbins/gubbins.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| outfiles | |
| Field required [type=missing, input_value={'alignment_file': 'multi...': {}, 'really_adv': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| outfiles | |
| Field required [type=missing, input_value={'alignment_file': 'multi...': {}, 'really_adv': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| outfiles | |
| Field required [type=missing, input_value={'alignment_file': 'multi...': {}, 'really_adv': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - Invalid parameter name found conv_meth | |
| Found 1 test cases to validate for tool raven / 1.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/raven/raven.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool tasmanian_mismatch / 1.0.7 (@ /Users/jxc755/workspace/tools-iuc/tools/tasmanian_mismatch/Tasmanian.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 3: validation failed - Invalid parameter name found reference_source_selector | |
| Found 0 test cases to validate for tool gwastools_manhattan_plot / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/gwastools/manhattan_plot.xml) | |
| Found 4 test cases to validate for tool megahit / 1.1.3.5 (@ /Users/jxc755/workspace/tools-iuc/tools/megahit/megahit_wrapper.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 5 test cases to validate for tool bwa / 0.7.17.4 (@ /Users/jxc755/workspace/tools-iuc/tools/bwa/bwa.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| input_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| input_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={'adv_pe_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool bwa_mem / 0.7.17.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bwa/bwa-mem.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool pathview / 1.24.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/pathview/pathview.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found cpd_data|tabular | |
| Found 1 test cases to validate for tool ncbi_eutils_epost / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/epost.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool ncbi_eutils_elink / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/elink.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool ncbi_eutils_esearch / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/esearch.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found enabled | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 1 test cases to validate for tool ncbi_eutils_esummary / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/esummary.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool ncbi_eutils_einfo / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/einfo.xml) | |
| Test Case 1: validation failed - Invalid parameter name found db_select | |
| Test Case 2: validation failed - Invalid parameter name found db_select | |
| Found 1 test cases to validate for tool ncbi_eutils_egquery / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/egquery.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool ncbi_eutils_ecitmatch / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/ecitmatch.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.citation_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool ncbi_eutils_efetch / 1.70+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_entrez_eutils/efetch.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| query_source.__absent__.id_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool scikit_bio_diversity_beta_diversity / 0.4.2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/scikit-bio/scikit_bio_diversity_beta_diversity.xml) | |
| Test case 1: test case validated with warnings: | |
| - Using column names as test case values is deprecated, please adjust sample_columns to just use an integer column index. | |
| Found 4 test cases to validate for tool strelka_somatic / 2.9.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/strelka/strelka_somatic.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='decompressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='compressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='decompressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='decompressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool strelka_germline / 2.9.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/strelka/strelka_germline.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='decompressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='compressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| oo.vcf_type | |
| Input should be a valid boolean [type=bool_type, input_value='decompressed', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool rgweblogo3 / 3.5.0 (@ /Users/jxc755/workspace/tools-iuc/tools/weblogo3/rgWebLogo3.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mode | |
| Test Case 2: validation failed - Invalid parameter name found mode | |
| Found 10 test cases to validate for tool winnowmap / 2.03+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/winnowmap/winnowmap.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool egsea / 1.20.0 (@ /Users/jxc755/workspace/tools-iuc/tools/egsea/egsea.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| base_methods | |
| Field required [type=missing, input_value={'input': {'rep_factor': ...n_commercial_use': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool pipelign / 0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/pipelign/pipelign.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool hicexplorer_hicplotmatrix / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPlotMatrix.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool hicexplorer_hiccompartmentspolarization / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicCompartmentalization.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool hicexplorer_hicbuildmatrix / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicBuildMatrix.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hicexplorer_hicaverageregions / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicAverageRegions.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicdifferentialtad / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicDifferentialTAD.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicmergeloops / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicMergeLoops.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicplotsvl / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPlotSVL.xml) | |
| Test Case 1: validation failed - Invalid parameter name found color | |
| Found 3 test cases to validate for tool hicexplorer_hicnormalize / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicNormalize.xml) | |
| Test Case 1: validation failed - Invalid parameter name found normalize | |
| Test Case 2: validation failed - Invalid parameter name found normalize | |
| Test Case 3: validation failed - Invalid parameter name found normalize | |
| Found 2 test cases to validate for tool hicexplorer_hicadjustmatrix / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicAdjustMatrix.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool hicexplorer_chicaggregatestatistic / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicAggregateStatistic.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| tar_input_conditional.__absent__.interactionFiles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tar_input_conditional.__absent__.targetFiles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| tar_input_conditional.__absent__.interactionFiles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| tar_input_conditional.__absent__.targetFiles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 5 test cases to validate for tool hicexplorer_hiccorrectmatrix / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicCorrectMatrix.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mode_selector | |
| Test Case 2: validation failed - Invalid parameter name found mode_selector | |
| Test Case 3: validation failed - Invalid parameter name found mode_selector | |
| Test Case 4: validation failed - Invalid parameter name found mode_selector | |
| Test Case 5: validation failed - Invalid parameter name found mode_selector | |
| Found 2 test cases to validate for tool hicexplorer_hicplotviewpoint / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPlotViewpoint.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool hicexplorer_hicplotdistvscounts / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPlotDistVsCounts.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool hicexplorer_hiccorrelate / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicCorrelate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool hicexplorer_hicplotaverageregions / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPlotAverageRegions.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicfindrestrictionsites / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicFindRestrictionSites.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicmergematrixbins / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicMergeMatrixBins.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool hicexplorer_hicconvertformat / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicConvertFormat.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool hicexplorer_hichyperoptDetectLoops / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicHyperoptDetectLoops.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool hicexplorer_hicpca / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicPCA.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicaggregatecontacts / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicAggregateContacts.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool hicexplorer_chicplotviewpoint / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicPlotViewpoint.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 1 test cases to validate for tool hicexplorer_chicqualitycontrol / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicQualityControl.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicmergedomains / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicMergeDomains.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicdetectloops / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicDetectLoops.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hiccomparematrices / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicCompareMatrices.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool hicexplorer_chicdifferentialtest / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicDifferentialTest.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool hicexplorer_hictransform / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicTransform.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hicexplorer_hicsummatrices / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicSumMatrices.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool hicexplorer_hicfindtads / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicFindTADs.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool hicexplorer_chicviewpoint / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicViewpoint.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicinfo / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicInfo.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool hicexplorer_chicviewpointbackgroundmodel / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicViewpointBackgroundModel.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool hicexplorer_chicsignificantinteractions / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/chicSignificantInteractions.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicquickqc / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicQuickQC.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool hicexplorer_hicvalidatelocations / 3.6+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hicexplorer/hicValidateLocations.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool prinseq / 0.20.4+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/prinseq/prinseq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| seq_type.__absent__.input_singles | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool control_freec / 11.6+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/freec/control_freec.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| WGS_WES.__absent__.input_sample_file | |
| Field required [type=missing, input_value={'advanced_settings': {'window_section': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| WGS_WES.__absent__.input_sample_file | |
| Field required [type=missing, input_value={'advanced_settings': {'window_section': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| WGS_WES.__absent__.input_sample_file | |
| Field required [type=missing, input_value={'advanced_settings': {'window_section': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| WGS_WES.__absent__.input_sample_file | |
| Field required [type=missing, input_value={'advanced_settings': {'window_section': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| WGS_WES.__absent__.input_sample_file | |
| Field required [type=missing, input_value={'advanced_settings': {'window_section': {}}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool blastxml_to_gapped_gff3 / 1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/blastxml_to_gapped_gff3/blastxml_to_gapped_gff3.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool data_source_gdcwebapp / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/gdcwebapp/gdcwebapp.xml) | |
| Found 2 test cases to validate for tool gprofiler_snpense / 0.1.7+galaxy11 (@ /Users/jxc755/workspace/tools-iuc/tools/gprofiler/gprofiler_snpense.xml) | |
| Test Case 1: validation failed - Invalid parameter name found base_url | |
| Test Case 2: validation failed - Invalid parameter name found base_url | |
| Found 2 test cases to validate for tool gprofiler_gost / 0.1.7+galaxy11 (@ /Users/jxc755/workspace/tools-iuc/tools/gprofiler/gprofiler_gost.xml) | |
| Test Case 1: validation failed - Invalid parameter name found base_url | |
| Test Case 2: validation failed - Invalid parameter name found base_url | |
| Found 1 test cases to validate for tool gprofiler_random / 0.1.7+galaxy11 (@ /Users/jxc755/workspace/tools-iuc/tools/gprofiler/gprofiler_random.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool gprofiler_convert / 0.1.7+galaxy11 (@ /Users/jxc755/workspace/tools-iuc/tools/gprofiler/gprofiler_convert.xml) | |
| Test Case 1: validation failed - Invalid parameter name found base_url | |
| Test Case 2: validation failed - Invalid parameter name found base_url | |
| Found 2 test cases to validate for tool gprofiler_orth / 0.1.7+galaxy11 (@ /Users/jxc755/workspace/tools-iuc/tools/gprofiler/gprofiler_orth.xml) | |
| Test Case 1: validation failed - Invalid parameter name found base_url | |
| Test Case 2: validation failed - Invalid parameter name found base_url | |
| Found 3 test cases to validate for tool nanoplot / 1.28.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/nanoplot/nanoplot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found filter|minlenght | |
| Test Case 3: validated | |
| Found 8 test cases to validate for tool exonerate / 2.4.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/exonerate/exonerate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 5 test cases to validate for tool flash / 1.2.11.4 (@ /Users/jxc755/workspace/tools-iuc/tools/flash/flash.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| layout.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| layout.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| layout.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| layout.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| layout.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| layout.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| layout.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| layout.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| layout.__absent__.forward | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| layout.__absent__.reverse | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool megahit_contig2fastg / 1.1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/megahit_contig2fastg/megahit_contig2fastg.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool goseq / 1.44.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/goseq/goseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found make_plots | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 0 test cases to validate for tool moabs / 1.3.4.6+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/moabs/moabs.xml) | |
| Found 1 test cases to validate for tool mummer_delta_filter / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/delta-filter.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mummer_mummer / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/mummer.xml) | |
| Test Case 1: validation failed - Invalid parameter name found plot | |
| Found 1 test cases to validate for tool mummer_dnadiff / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/dnadiff.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_type | |
| Found 1 test cases to validate for tool mummer_show_coords / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/show-coords.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mummer_mummerplot / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/mummerplot.xml) | |
| Test Case 1: validation failed - Invalid parameter name found seq_input | |
| Found 1 test cases to validate for tool mummer_nucmer / 4.0.0rc1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/mummer4/nucmer.xml) | |
| Test Case 1: validation failed - Invalid parameter name found advanced | |
| Found 0 test cases to validate for tool calculate_numeric_param / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/calculate_numeric_param/calculate_numeric_param.xml) | |
| Found 4 test cases to validate for tool idr / 2.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/idr/idr.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 1 test cases to validate for tool phyml / 3.3.20190909 (@ /Users/jxc755/workspace/tools-iuc/tools/phyml/phyml.xml) | |
| Test Case 1: validation failed - Invalid parameter name found type_of_seq | |
| Found 4 test cases to validate for tool spotyping / 2.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/spotyping/spotyping.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found seq | |
| Test Case 3: validation failed - Invalid parameter name found noQuery | |
| Test Case 4: validation failed - Invalid parameter name found noQuery | |
| Found 2 test cases to validate for tool fgsea / 1.8.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/fgsea/fgsea.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool structureharvester / 0.6.94 (@ /Users/jxc755/workspace/tools-iuc/tools/structureharvester/structureharvester.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool annotatemyids / 3.12.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/annotatemyids/annotateMyIDs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| output_cols | |
| Field required [type=missing, input_value={'id_file': 'genelist.txt...s', 'id_type': 'SYMBOL'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| output_cols | |
| Field required [type=missing, input_value={'id_file': 'ensembl_ids....BL', 'rscriptOpt': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool stacks2_shortreads / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_shortreads.xml) | |
| Test Case 1: validation failed - Invalid parameter name found add_log | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| capture | |
| Input should be a valid boolean [type=bool_type, input_value='-D', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 5 test cases to validate for tool stacks2_ustacks / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_ustacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| R | |
| Input should be a valid boolean [type=bool_type, input_value='-R', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| H | |
| Input should be a valid boolean [type=bool_type, input_value='-H', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - Invalid parameter name found select_model|model_type | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| assembly_options.d | |
| Input should be a valid boolean [type=bool_type, input_value='-d', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool stacks2_sstacks / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_sstacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| x | |
| Input should be a valid boolean [type=bool_type, input_value='-x', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 5 test cases to validate for tool stacks2_tsv2bam / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_tsv2bam.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 0 test cases to validate for tool stacks2_gstacks / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_gstacks.xml) | |
| Found 11 test cases to validate for tool stacks2_populations / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_populations.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| options_filtering.filter_haplotype_wise | |
| Input should be a valid boolean [type=bool_type, input_value='--filter-haplotype-wise', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| fstats_conditional.yes.fst_correction | |
| Input should be a valid boolean [type=bool_type, input_value='--fst-correction', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 9: validation failed - Invalid parameter name found bootstrap_reps | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Found 2 test cases to validate for tool stacks2_refmap / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_refmap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool stacks2_kmerfilter / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_kmerfilter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found rare | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| capture | |
| Input should be a valid boolean [type=bool_type, input_value='-D', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| options_kmer_char.write_k_freq | |
| Input should be a valid boolean [type=bool_type, input_value='--write_k_freq', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| options_kmer_char.k_dist | |
| Input should be a valid boolean [type=bool_type, input_value='--k_dist', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool stacks2_denovomap / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_denovomap.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| pe_options.rm_pcr_duplicates | |
| Input should be a valid boolean [type=bool_type, input_value='--rm-pcr-duplicates', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool stacks2_clonefilter / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_clonefilter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool stacks2_cstacks / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_cstacks.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| report_mmatches | |
| Input should be a valid boolean [type=bool_type, input_value='--report_mmatches', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 7 test cases to validate for tool stacks2_procrad / 2.55+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/stacks2/stacks_procrad.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| filter_cond.yes.remove | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| filter_cond.yes.discard | |
| Input should be a valid boolean [type=bool_type, input_value='-q', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| capture | |
| Input should be a valid boolean [type=bool_type, input_value='-D', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| capture | |
| Input should be a valid boolean [type=bool_type, input_value='-D', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 3 validation errors for DynamicModelForTool | |
| options_advanced.retain_header | |
| Input should be a valid boolean [type=bool_type, input_value='--retain_header', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| options_advanced.bestrad | |
| Input should be a valid boolean [type=bool_type, input_value='--bestrad', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| options_advanced.disable_rad_check | |
| Input should be a valid boolean [type=bool_type, input_value='--disable_rad_check', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 2 test cases to validate for tool maf_stats1 / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/maf_stats/maf_stats.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| maf_source_type.__absent__.species | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 0 test cases to validate for tool gecko / 1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/gecko/gecko.xml) | |
| Found 2 test cases to validate for tool drep_dereplicate / 2.5.4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/drep/drep_dereplicate.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| select_outputs | |
| Field required [type=missing, input_value={'genomes': 'Enterococcus...omy': {}, 'warning': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| select_outputs | |
| Field required [type=missing, input_value={'genomes': 'Enterococcus...omy': {}, 'warning': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool drep_compare / 2.5.4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/drep/drep_compare.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| select_outputs | |
| Field required [type=missing, input_value={'genomes': 'Enterococcus...omy': {}, 'warning': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 27 test cases to validate for tool meryl / 1.3+galaxy4 (@ /Users/jxc755/workspace/tools-iuc/tools/meryl/meryl.xml) | |
| Test Case 1: validation failed - Invalid parameter name found operation_type|count_operation | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found operation_type|filter_type|distinct | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validation failed - Invalid parameter name found operation_type|input_meryldb_03 | |
| Test Case 14: validated | |
| Test Case 15: validated | |
| Test Case 16: validated | |
| Test Case 17: validated | |
| Test Case 18: validated | |
| Test Case 19: validated | |
| Test Case 20: validated | |
| Test Case 21: validated | |
| Test Case 22: validated | |
| Test Case 23: validated | |
| Test Case 24: validated | |
| Test Case 25: validated | |
| Test Case 26: validated | |
| Test Case 27: validation failed - Invalid parameter name found operation_type|count_operation | |
| Found 1 test cases to validate for tool kc-align / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/kc-align/kc-align.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mode | |
| Found 1 test cases to validate for tool PlasFlow / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/plasflow/plasflow.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool mykrobe_predict / 0.10.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/mykrobe/mykrobe_predict.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| data_type.__absent__.seq1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| data_type.__absent__.seq1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| data_type.__absent__.seq1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool rnaspades / 3.9.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/rnaspades/rnaspades.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| libraries | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| libraries | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 2 test cases to validate for tool filtlong / 0.2.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/filtlong/filtlong.xml) | |
| Test Case 1: validation failed - Invalid parameter name found min_length | |
| Test Case 2: validation failed - Invalid parameter name found assembly | |
| Found 4 test cases to validate for tool collection_column_join / 0.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/collection_column_join/collection_column_join.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| include_outputs | |
| Input should be a valid list [type=list_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/list_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| include_outputs | |
| Input should be a valid list [type=list_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/list_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| include_outputs | |
| Input should be a valid list [type=list_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/list_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| include_outputs | |
| Input should be a valid list [type=list_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/list_type | |
| Found 1 test cases to validate for tool get_hrun / 1.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/get_hrun/get_hrun.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool genetrack / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/genetrack/genetrack.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_format_cond.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_format_cond.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_format_cond.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool shovill / 1.1.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/shovill/shovill.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| library.__absent__.R1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| library.__absent__.R2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool swiftlink / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/swift/swift.xml) | |
| Test Case 1: validation failed - Invalid parameter name found b | |
| Test Case 2: validation failed - Invalid parameter name found b | |
| Found 4 test cases to validate for tool Extract genomic DNA 1 / 3.0.3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/extract_genomic_dna/extract_genomic_dna.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_genome_source | |
| Test Case 2: validation failed - Invalid parameter name found reference_genome_source | |
| Test Case 3: validation failed - Invalid parameter name found reference_genome_source | |
| Test Case 4: validation failed - Invalid parameter name found reference_genome_source | |
| Found 2 test cases to validate for tool seqwish / 0.7.2 (@ /Users/jxc755/workspace/tools-iuc/tools/seqwish/seqwish.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool pilon / 1.20.1 (@ /Users/jxc755/workspace/tools-iuc/tools/pilon/pilon.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_genome.__absent__.history_item | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| auto_selection.__absent__.bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_genome.__absent__.history_item | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| auto_selection.__absent__.bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool khmer_partition / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/do-partition.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool khmer_extract_partitions / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/extract-partitions.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool khmer_count_median / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/count-median.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool khmer_filter_below_abundance_cutoff / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/filter-below-abund.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool khmer_normalize_by_median / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/normalize-by-median.xml) | |
| Test Case 1: validation failed - Invalid parameter name found type | |
| Test Case 2: validation failed - Invalid parameter name found type | |
| Test Case 3: validation failed - Invalid parameter name found type | |
| Found 2 test cases to validate for tool khmer_abundance_distribution_single / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/abundance-dist-single.xml) | |
| Test Case 1: validation failed - Invalid parameter name found type | |
| Test Case 2: validation failed - Invalid parameter name found type | |
| Found 2 test cases to validate for tool khmer_filter_abundance / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/filter-abund.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool khmer_abundance_distribution / 3.0.0a3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/khmer/abundance-dist.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool nanopolishcomp_freqmethcalculate / 0.6.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/nanopolishcomp/freqmethcalculate.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| out | |
| Field required [type=missing, input_value={'i': 'sample_meth.tsv'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool nanopolishcomp_eventaligncollapse / 0.6.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/nanopolishcomp/eventaligncollapse.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| f | |
| Field required [type=missing, input_value={'i': 'sample_event.tsv',...ign_collapse,index,log'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool maaslin2 / 0.99.12+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/maaslin2/maaslin2.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bedtools_genomecoveragebed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/genomeCoverageBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input | |
| Field required [type=missing, input_value={'genome_file_opts': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bedtools_nucbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/nucBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bedtools_fisher / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/fisherBed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 2 test cases to validate for tool bedtools_expandbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/expandBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 7 test cases to validate for tool bedtools_coveragebed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/coverageBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool bedtools_jaccard / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/jaccardBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool bedtools_bed12tobed6 / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/bed12ToBed6.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool bedtools_slopbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/slopBed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Test Case 2: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 4 test cases to validate for tool bedtools_shufflebed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/shuffleBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| chrom | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Test Case 3: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Test Case 4: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 5 test cases to validate for tool bedtools_map / 2.30.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/mapBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found genome_choose | |
| Found 2 test cases to validate for tool bedtools_links / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/linksBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool bedtools_multicovtbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/multiCov.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| split | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool bedtools_subtractbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/subtractBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bedtools_bedtoigv / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/bedToIgv.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bedtools_bedpetobam / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/bedpeToBam.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 3 test cases to validate for tool bedtools_maskfastabed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/maskFastaBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bedtools_tagbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/tagBed.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool bedtools_makewindowsbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/makeWindowsBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| type.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| type.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| type.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| type.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool bedtools_reldistbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/reldist.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bedtools_clusterbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/clusterBed.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool bedtools_sortbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/sortBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found genome_choose | |
| Found 1 test cases to validate for tool bedtools_spacingbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/spacingBed.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bedtools_bedtobam / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/bedToBam.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 1 test cases to validate for tool bedtools_complementbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/complementBed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 6 test cases to validate for tool bedtools_closestbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/closestBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_with.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool bedtools_annotatebed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/annotateBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| names.__absent__.beds | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bedtools_windowbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/windowBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found addition_select | |
| Test Case 3: validation failed - Invalid parameter name found addition_select | |
| Found 2 test cases to validate for tool bedtools_flankbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/flankBed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Test Case 2: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 2 test cases to validate for tool bedtools_getfastabed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/getfastaBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| fasta_source.__absent__.fasta | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| fasta_source.__absent__.fasta | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 22 test cases to validate for tool bedtools_intersectbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/intersectBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-A.b...'}, 'fraction_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-que...'}, 'fraction_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| sorted | |
| Input should be a valid boolean [type=bool_type, input_value='-sorted', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| sorted | |
| Input should be a valid boolean [type=bool_type, input_value='-sorted', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 3 validation errors for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-que...v', 'sorted': '-sorted'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| invert | |
| Input should be a valid boolean [type=bool_type, input_value='-v', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| sorted | |
| Input should be a valid boolean [type=bool_type, input_value='-sorted', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| sorted | |
| Input should be a valid boolean [type=bool_type, input_value='-sorted', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validation failed - 2 validation errors for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-A.b...cond': {}, 'once': '-u'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| once | |
| Input should be a valid boolean [type=bool_type, input_value='-u', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 14: validation failed - 2 validation errors for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-A.b...ond': {}, 'count': '-c'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| count | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 15: validation failed - 2 validation errors for DynamicModelForTool | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersect-A.b...nd': {}, 'invert': '-v'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| invert | |
| Input should be a valid boolean [type=bool_type, input_value='-v', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 16: validated | |
| Test Case 17: validated | |
| Test Case 18: validated | |
| Test Case 19: validation failed - 1 validation error for DynamicModelForTool | |
| fraction_cond.specify.reciprocal_cond.__absent__.disjoint | |
| Input should be a valid boolean [type=bool_type, input_value='-e', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 20: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 21: validation failed - 1 validation error for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 22: validation failed - 2 validation errors for DynamicModelForTool | |
| reduce_or_iterate.__absent__.inputB | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| overlap_mode | |
| Field required [type=missing, input_value={'inputA': 'intersectBed1...nd': {}, 'invert': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool bedtools_overlapbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/overlapBed.xml) | |
| Test case 1: test case validated with warnings: | |
| - Using column names as test case values is deprecated, please adjust cols to just use an integer column index. | |
| Found 5 test cases to validate for tool bedtools_mergebed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/mergeBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found strandedness | |
| Test Case 3: validation failed - Invalid parameter name found report_number | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 4 test cases to validate for tool bedtools_unionbedgraph / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/unionBedGraphs.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bedtools_multiintersectbed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/multiIntersectBed.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| tag.__absent__.inputs | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bedtools_groupbybed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/groupbyBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bedtools_randombed / 2.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/randomBed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genome_file_opts_selector | |
| Found 3 test cases to validate for tool bedtools_bamtobed / 2.30.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/bedtools/bamToBed.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool salsa / 2.3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/salsa2/salsa2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found length | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool tetoolkit_tetranscripts / 2.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tetoolkit/tetranscript.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| oo.out | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool diffbind / 2.10.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/diffbind/diffbind.xml) | |
| Test Case 1: validation failed - Invalid parameter name found format | |
| Test Case 2: validation failed - Invalid parameter name found format | |
| Test Case 3: validation failed - Invalid parameter name found format | |
| Test Case 4: validation failed - Invalid parameter name found format | |
| Found 8 test cases to validate for tool lastz_wrapper_2 / 1.3.3 (@ /Users/jxc755/workspace/tools-iuc/tools/lastz/lastz.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_source | |
| Test Case 2: validation failed - Invalid parameter name found ref_source | |
| Test Case 3: validation failed - Invalid parameter name found ref_source | |
| Test Case 4: validation failed - Invalid parameter name found ref_source | |
| Test Case 5: validation failed - Invalid parameter name found ref_source | |
| Test Case 6: validation failed - Invalid parameter name found ref_source | |
| Test Case 7: validation failed - Invalid parameter name found ref_source | |
| Test Case 8: validation failed - Invalid parameter name found ref_source | |
| Found 2 test cases to validate for tool lastz_d_wrapper / 1.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/lastz/lastz_d.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_source | |
| Test Case 2: validation failed - Invalid parameter name found ref_source | |
| Found 0 test cases to validate for tool barcode_splitter / 0.18.4.0 (@ /Users/jxc755/workspace/tools-iuc/tools/barcode_splitter/barcode_splitter.xml) | |
| Found 1 test cases to validate for tool odgi_build / 0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/odgi/build.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool odgi_viz / 0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/odgi/vis.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool join_files_by_id / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/join_files_by_id/join_files_by_id.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool dropletutils / 1.10.0+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/dropletutils/dropletutils.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validation failed - Invalid parameter name found operation|method|lowerpopr | |
| Found 4 test cases to validate for tool jasminesv / 1.0.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/jasminesv/jasminesv.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 0 test cases to validate for tool genehunter_modscore / 3.0.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/genehunter_modscore/genehunter_modscore.xml) | |
| Found 1 test cases to validate for tool export2graphlan / 0.20+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/export2graphlan/export2graphlan.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_lefse_output_test | |
| Found 1 test cases to validate for tool snap / 2013_11_29 (@ /Users/jxc755/workspace/tools-iuc/tools/snap/snap.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool snap_training / 2013_11_29+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/snap/snap_training.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool bp_genbank2gff3 / 1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/bioperl/bp_genbank2gff3.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 6 test cases to validate for tool featurecounts / 2.0.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/featurecounts/featurecounts.xml) | |
| Test Case 1: validation failed - Invalid parameter name found anno_select | |
| Test Case 2: validation failed - Invalid parameter name found anno_select | |
| Test Case 3: validation failed - Invalid parameter name found anno_select | |
| Test Case 4: validation failed - Invalid parameter name found anno_select | |
| Test Case 5: validation failed - Invalid parameter name found anno_select | |
| Test Case 6: validation failed - Invalid parameter name found anno_select | |
| Found 2 test cases to validate for tool calculate_contrast_threshold / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/calculate_contrast_threshold/calculate_contrast_threshold.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool pyega3 / 3.4.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/pyega3/pyega3.xml) | |
| Test Case 1: validation failed - Invalid parameter name found action_type | |
| Test Case 2: validation failed - Invalid parameter name found action_type | |
| Test Case 3: validation failed - Invalid parameter name found action_type | |
| Test Case 4: validation failed - Invalid parameter name found action_type | |
| Found 8 test cases to validate for tool delly_lr / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/lr.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found discovery|qualtra | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 2 test cases to validate for tool delly_cnv / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/cnv.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool delly_classify / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/classify.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool delly_merge / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/merge.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found overlap|bp-offset | |
| Test Case 3: validated | |
| Found 5 test cases to validate for tool delly_filter / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 8 test cases to validate for tool delly_call / 0.8.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/delly/call.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 1 test cases to validate for tool maker_map_ids / 2.31.11 (@ /Users/jxc755/workspace/tools-iuc/tools/maker/map_ids.xml) | |
| Test Case 1: validated | |
| Found 9 test cases to validate for tool maker / 2.31.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/maker/maker.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validation failed - Invalid parameter name found repeat_masking|repeat_source|species_list | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Found 2 test cases to validate for tool collection_element_identifiers / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/collection_element_identifiers/collection_element_identifiers.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool fasttree / 2.1.10+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/fasttree/fasttree.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_selector.__absent__.input | |
| Field required [type=missing, input_value={'intree_selector': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool snp_dists / 0.8.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/snp-dists/snp-dists.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool scoary / 1.6.16+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scoary/scoary.xml) | |
| Test Case 1: validation failed - Invalid parameter name found upgma | |
| Test Case 2: validation failed - Invalid parameter name found upgma | |
| Found 1 test cases to validate for tool exomedepth / 1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/exomedepth/exomedepth.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vegan_diversity / 2.4-3 (@ /Users/jxc755/workspace/tools-iuc/tools/vegan/vegan_diversity.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_type_selector | |
| Found 1 test cases to validate for tool vegan_fisher_alpha / 2.4-3 (@ /Users/jxc755/workspace/tools-iuc/tools/vegan/vegan_fisher_alpha.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool vegan_rarefaction / 2.4-3 (@ /Users/jxc755/workspace/tools-iuc/tools/vegan/vegan_rarefaction.xml) | |
| Found 14 test cases to validate for tool rna_star / 2.7.8a+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/rgrnastar/rg_rnaStar.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found algo|params|seed|seed_select | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Test Case 14: validated | |
| Found 8 test cases to validate for tool rna_starsolo / 2.7.8a (@ /Users/jxc755/workspace/tools-iuc/tools/rgrnastar/rg_rnaStarSolo.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Found 0 test cases to validate for tool quast / 5.0.2+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/quast/quast.xml) | |
| Found 2 test cases to validate for tool tbvcfreport / 0.1.8+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tbvcfreport/tbvcfreport.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool jvarkit_wgscoverageplotter / 20201223+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/jvarkit/jvarkit_wgscoverageplotter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool optitype / 1.3.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/optitype/optitype.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool sonneityping / 20210201 (@ /Users/jxc755/workspace/tools-iuc/tools/sonneityping/parse_mykrobe_predict.xml) | |
| Test Case 1: validation failed - Invalid parameter name found optional.alleles | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool rcorrector / 1.0.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/rcorrector/rcorrector.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool repmatch_gff3 / 1.0.3 (@ /Users/jxc755/workspace/tools-iuc/tools/repmatch_gff3/repmatch_gff3.xml) | |
| Test Case 1: validation failed - Invalid parameter name found output_files | |
| Found 2 test cases to validate for tool scater_plot_dist_scatter / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/scater/scater-plot-dist-scatter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool scater_plot_pca / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/scater/scater-plot-pca.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool scater_create_qcmetric_ready_sce / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/scater/scater-create-qcmetric-ready-sce.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool scater_plot_tsne / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/scater/scater-plot-tsne.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool scater_filter / 1.22.0 (@ /Users/jxc755/workspace/tools-iuc/tools/scater/scater-filter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found filter_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found filter_type_selector | |
| Found 10 test cases to validate for tool ncbi_acc_download / 0.2.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ncbi_acc_download/ncbi_acc_download.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Found 6 test cases to validate for tool cd_hit / 4.8.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/cdhit/cd_hit.xml) | |
| Test Case 1: validation failed - Invalid parameter name found similarity | |
| Test Case 2: validation failed - Invalid parameter name found similarity | |
| Test Case 3: validation failed - Invalid parameter name found similarity | |
| Test Case 4: validation failed - Invalid parameter name found similarity | |
| Test Case 5: validation failed - Invalid parameter name found similarity | |
| Test Case 6: validation failed - Invalid parameter name found similarity | |
| Found 5 test cases to validate for tool porechop / 0.2.4 (@ /Users/jxc755/workspace/tools-iuc/tools/porechop/porechop.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found barcode_threshold | |
| Found 6 test cases to validate for tool rgcca / 3.0.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/rgcca/rgcca.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool taxonomy_krona_chart / 2.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/taxonomy_krona_chart/taxonomy_krona_chart.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| type_of_data.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| type_of_data.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| type_of_data.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool plotdexseq / 1.28.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/dexseq/plotdexseq.xml) | |
| Test Case 1: validation failed - Invalid parameter name found geneid | |
| Test Case 2: validation failed - Invalid parameter name found genefile | |
| Found 4 test cases to validate for tool dexseq / 1.28.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/dexseq/dexseq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 2 test cases to validate for tool dexseq_count / 1.28.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/dexseq/dexseq_count.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.gtffile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| mode.__absent__.gtffile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool pretext_map / 0.1.8+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/pretext/pretext_map.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool pretext_snapshot / 0.0.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/pretext/pretext_snapshot.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| grid | |
| Input tag 'true' found using model_x_discriminator() does not match any of the expected tags: 'yes', 'no', '__absent__' [type=union_tag_invalid, input_value={'showGrid': True, 'grids...: 2, 'gridcolor': 'red'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/union_tag_invalid | |
| sequencenames | |
| Input should be a valid boolean [type=bool_type, input_value='--printSequenceNames', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool gff3.rebase / 1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/gff3_rebase/gff3_rebase.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool bwa_mem2 / 2.2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bwa_mem2/bwa-mem2.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| fastq_input.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| fastq_input.__absent__.fastq_input2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool samblaster / 0.1.24 (@ /Users/jxc755/workspace/tools-iuc/tools/samblaster/samblaster.xml) | |
| Test Case 1: validation failed - Invalid parameter name found discordandFile | |
| Test Case 2: validation failed - Invalid parameter name found discordandFile | |
| Found 1 test cases to validate for tool BayeScan / 2.1 (@ /Users/jxc755/workspace/tools-iuc/tools/bayescan/bayescan.xml) | |
| Test Case 1: validation failed - Invalid parameter name found loci | |
| Found 1 test cases to validate for tool mut2sscs / 2.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/variant_analyzer/mut2sscs.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool read2mut / 2.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/variant_analyzer/read2mut.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool mut2read / 2.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/variant_analyzer/mut2read.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vsearch_alignment / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/alignment.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| acceptall | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool vsearch_clustering / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/clustering.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| usersort | |
| Input should be a valid boolean [type=bool_type, input_value='--usersort', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| sizeout | |
| Input should be a valid boolean [type=bool_type, input_value='--sizeout', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| usersort | |
| Input should be a valid boolean [type=bool_type, input_value='--usersort', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| sizeout | |
| Input should be a valid boolean [type=bool_type, input_value='--sizeout', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| uc | |
| Input should be a valid boolean [type=bool_type, input_value='--uc', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| usersort | |
| Input should be a valid boolean [type=bool_type, input_value='--usersort', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| sizeout | |
| Input should be a valid boolean [type=bool_type, input_value='--sizeout', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| usersort | |
| Input should be a valid boolean [type=bool_type, input_value='--usersort', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| sizeout | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 5 test cases to validate for tool vsearch_sorting / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/sorting.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| sorting_mode.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| sorting_mode.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| sorting_mode.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| sorting_mode.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sizeout | |
| Input should be a valid boolean [type=bool_type, input_value='--sizeout', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| sorting_mode.__absent__.infile | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool vsearch_masking / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/masking.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool vsearch_dereplication / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/dereplication.xml) | |
| Found 2 test cases to validate for tool vsearch_search / 2.8.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/search.xml) | |
| Test Case 1: validation failed - Invalid parameter name found adv_opts_selector | |
| Test Case 2: validation failed - Invalid parameter name found adv_opts_selector | |
| Found 1 test cases to validate for tool vsearch_chimera_detection / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/chimera.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| detection_mode.__absent__.infile_denovo | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool vsearch_shuffling / 2.8.3.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsearch/shuffling.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool augustus / 3.4.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/augustus/augustus.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| outputs | |
| Field required [type=missing, input_value={'input_genome': 'human_a...hints': {}, 'range': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| outputs | |
| Field required [type=missing, input_value={'input_genome': 'human_a...range': {}, 'gff': True}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - Invalid parameter name found organism | |
| Test Case 4: validation failed - 6 validation errors for DynamicModelForTool | |
| outputs.0.literal['protein'] | |
| Input should be 'protein' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['codingseq'] | |
| Input should be 'codingseq' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['introns'] | |
| Input should be 'introns' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['start'] | |
| Input should be 'start' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['stop'] | |
| Input should be 'stop' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['cds'] | |
| Input should be 'cds' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 5: validation failed - 6 validation errors for DynamicModelForTool | |
| outputs.0.literal['protein'] | |
| Input should be 'protein' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['codingseq'] | |
| Input should be 'codingseq' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['introns'] | |
| Input should be 'introns' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['start'] | |
| Input should be 'start' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['stop'] | |
| Input should be 'stop' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| outputs.0.literal['cds'] | |
| Input should be 'cds' [type=literal_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| outputs | |
| Field required [type=missing, input_value={'input_genome': 'human_a...hints': {}, 'range': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool augustus_training / 3.4.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/augustus/augustus_training.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool fraggenescan / 1.30.0 (@ /Users/jxc755/workspace/tools-iuc/tools/fraggenescan/fraggenescan.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool breseq / 0.35.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/breseq/breseq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| run.detect.predict_junctions | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| run.detect.predict_junctions | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool biom_convert / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_convert.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| output.tsv.header_key | |
| Input should be a valid string [type=string_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/string_type | |
| output.tsv.output_metadata_id | |
| Input should be a valid string [type=string_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/string_type | |
| Found 2 test cases to validate for tool biom_normalize_table / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_normalize_table.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| relative_abund | |
| Input should be a valid boolean [type=bool_type, input_value='--relative-abund', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| presence_absence | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| relative_abund | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| presence_absence | |
| Input should be a valid boolean [type=bool_type, input_value='--presence-absence', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool biom_summarize_table / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_summarize_table.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| qualitative | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| observations | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| qualitative | |
| Input should be a valid boolean [type=bool_type, input_value='--qualitative', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| observations | |
| Input should be a valid boolean [type=bool_type, input_value='--observations', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool biom_subset_table / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_subset_table.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool biom_from_uc / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_from_uc.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool biom_add_metadata / 2.1.10+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/biom_format/biom_add_metadata.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| output_as_json | |
| Input should be a valid boolean [type=bool_type, input_value='--output-as-json', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 9 test cases to validate for tool orthofinder_onlygroups / 2.4.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/orthofinder/orthofinder_only_groups.xml) | |
| Test Case 1: validation failed - Invalid parameter name found inflation | |
| Test Case 2: validation failed - Invalid parameter name found inflation | |
| Test Case 3: validation failed - Invalid parameter name found inflation | |
| Test Case 4: validation failed - Invalid parameter name found inflation | |
| Test Case 5: validation failed - Invalid parameter name found inflation | |
| Test Case 6: validation failed - Invalid parameter name found inflation | |
| Test Case 7: validation failed - Invalid parameter name found inflation | |
| Test Case 8: validation failed - Invalid parameter name found inflation | |
| Test Case 9: validation failed - Invalid parameter name found inflation | |
| Found 1 test cases to validate for tool shorah_amplicon / 1.1.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/shorah/shorah.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| log_output | |
| Input should be a valid boolean [type=bool_type, input_value='log', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool meme_chip / 4.11.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/meme_chip/meme_chip.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found options_type | |
| Found 5 test cases to validate for tool snp_sites / 2.5.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/snp-sites/snp-sites.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - Invalid parameter name found out_type|C | |
| Found 2 test cases to validate for tool crispr_studio / 1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crispr_studio/crispr_studio.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| outputs | |
| Field required [type=missing, input_value={'input_data': 'crispr_te... 'n': True, 'rerun': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 12 test cases to validate for tool edger / 3.34.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/edger/edger.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 11: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Test Case 12: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.rep_factor | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 5 test cases to validate for tool spaln / 2.4.03+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/spaln/spaln.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 3 test cases to validate for tool list_spaln_tables / 2.4.03+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/spaln/list_spaln_tables.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 8 test cases to validate for tool fastqc / 0.73+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/fastqc/rgFastQC.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| nogroup | |
| Input should be a valid boolean [type=bool_type, input_value='--nogroup', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 8: validated | |
| Found 2 test cases to validate for tool est_abundance / 2.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/bracken/est-abundance.xml) | |
| Test Case 1: validation failed - Invalid parameter name found bracken_database | |
| Test Case 2: validation failed - Invalid parameter name found bracken_database | |
| Found 2 test cases to validate for tool miniasm / 0.3_r179+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/miniasm/miniasm.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found minMatch | |
| Found 5 test cases to validate for tool kallisto_pseudo / 0.46.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/kallisto/kallisto_pseudo.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool kallisto_quant / 0.46.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/kallisto/kallisto_quant.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.reads | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool chira_collapse / 1.4.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/chira/chira_collapse.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool chira_quantify / 1.4.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/chira/chira_quantify.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool chira_extract / 1.4.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/chira/chira_extract.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| annotation.__absent__.gtf | |
| Field required [type=missing, input_value={'fasta_source': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| annotation.__absent__.fasta_source.__absent__.fasta | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reference.__absent__.ref_fasta1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reference.__absent__.ref_fasta2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool chira_map / 1.4.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/chira/chira_map.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference.__absent__.ref_fasta1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reference.__absent__.ref_fasta2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| reference.__absent__.ref_fasta1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reference.__absent__.ref_fasta2 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool chira_merge / 1.4.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/chira/chira_merge.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.__absent__.gtf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.__absent__.gtf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.__absent__.gtf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| annotation.__absent__.gtf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool poretools_events / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_events.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool poretools_extract / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_extract.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool poretools_qualdist / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_qualdist.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool poretools_tabular / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_tabular.xml) | |
| Test Case 1: validation failed - Invalid parameter name found types | |
| Test Case 2: validation failed - Invalid parameter name found types | |
| Test Case 3: validation failed - Invalid parameter name found types | |
| Test Case 4: validation failed - Invalid parameter name found types | |
| Test Case 5: validation failed - Invalid parameter name found types | |
| Found 2 test cases to validate for tool poretools_squiggle / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_squiggle.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool poretools_winner / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_winner.xml) | |
| Test Case 1: validation failed - Invalid parameter name found types | |
| Test Case 2: validation failed - Invalid parameter name found types | |
| Test Case 3: validation failed - Invalid parameter name found types | |
| Test Case 4: validation failed - Invalid parameter name found types | |
| Found 2 test cases to validate for tool poretools_yield_plot / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_yield_plot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool poretools_nucdist / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_nucdist.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool poretools_qualpos / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_qualpos.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool poretools_hist / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_hist.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 5 test cases to validate for tool poretools_times / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_times.xml) | |
| Test Case 1: validation failed - Invalid parameter name found types | |
| Test Case 2: validation failed - Invalid parameter name found types | |
| Test Case 3: validation failed - Invalid parameter name found types | |
| Test Case 4: validation failed - Invalid parameter name found types | |
| Test Case 5: validation failed - Invalid parameter name found types | |
| Found 5 test cases to validate for tool poretools_stats / 0.6.1a1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Found 2 test cases to validate for tool poretools_occupancy / 0.6.1a1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/poretools/poretools_occupancy.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool feelnc / 0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/feelnc/feelnc_wrapper.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool abyss-pe / 2.3.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/abyss/abyss-pe.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool krocus / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/krocus/krocus.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found filtered_reads | |
| Found 1 test cases to validate for tool glimmer_extract / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_extract.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool glimmer_acgt_content / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_acgt_content.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool glimmer_not_knowledge_based / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_wo_icm.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| detailed_report | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| report | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool glimmer_glimmer_to_gff / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_glimmer_to_gff.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool glimmer_knowledge_based / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_w_icm.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| linear | |
| Input should be a valid boolean [type=bool_type, input_value='--linear', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| no_indep | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| extend | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool glimmer_build_icm / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_build_icm.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| no_stops | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool glimmer_long_orfs / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_long_orfs.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool glimmer_gbk_to_orf / 3.02 (@ /Users/jxc755/workspace/tools-iuc/tools/glimmer/glimmer_gbk_to_orf.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool bio_hansel / 2.6.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/hansel/bio_hansel.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| data_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| data_type.__absent__.fastq_input1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool gtftobed12 / 357 (@ /Users/jxc755/workspace/tools-iuc/tools/gtfToBed12/gtfToBed12.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 3: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 4: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 5: validation failed - Invalid parameter name found advanced_options_selector | |
| Test Case 6: validation failed - Invalid parameter name found advanced_options_selector | |
| Found 2 test cases to validate for tool rapidnj / 2.3.2 (@ /Users/jxc755/workspace/tools-iuc/tools/rapidnj/rapidnj.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool table_compute / 1.2.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/table_compute/table_compute.xml) | |
| Found 1 test cases to validate for tool medaka_variant_pipeline / 1.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/medaka/medaka_variant.xml) | |
| Test Case 1: validation failed - 24 validation errors for DynamicModelForTool | |
| out.0.literal['round_0_hap_mixed_phased_bam'] | |
| Input should be 'round_0_hap_mixed_phased_bam' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_0_hap_mixed_phased_vcf'] | |
| Input should be 'round_0_hap_mixed_phased_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_0_hap_mixed_probs_hdf'] | |
| Input should be 'round_0_hap_mixed_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_0_hap_mixed_unphased_vcf'] | |
| Input should be 'round_0_hap_mixed_unphased_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_hap_1_vcf'] | |
| Input should be 'round_1_hap_1_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_hap_2_vcf'] | |
| Input should be 'round_1_hap_2_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_hap_1_probs_hdf'] | |
| Input should be 'round_1_hap_1_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_hap_2_probs_hdf'] | |
| Input should be 'round_1_hap_2_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.`literal['round_1_phased.vcf']` | |
| Input should be 'round_1_phased.vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_unfiltered_vcf'] | |
| Input should be 'round_1_unfiltered_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['round_1_vcf'] | |
| Input should be 'round_1_vcf' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.0.literal['log'] | |
| Input should be 'log' [type=literal_error, input_value='round_0_hap_mixed_probs.hdf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_0_hap_mixed_phased_bam'] | |
| Input should be 'round_0_hap_mixed_phased_bam' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_0_hap_mixed_phased_vcf'] | |
| Input should be 'round_0_hap_mixed_phased_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_0_hap_mixed_probs_hdf'] | |
| Input should be 'round_0_hap_mixed_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_0_hap_mixed_unphased_vcf'] | |
| Input should be 'round_0_hap_mixed_unphased_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_hap_1_vcf'] | |
| Input should be 'round_1_hap_1_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_hap_2_vcf'] | |
| Input should be 'round_1_hap_2_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_hap_1_probs_hdf'] | |
| Input should be 'round_1_hap_1_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_hap_2_probs_hdf'] | |
| Input should be 'round_1_hap_2_probs_hdf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.`literal['round_1_phased.vcf']` | |
| Input should be 'round_1_phased.vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_unfiltered_vcf'] | |
| Input should be 'round_1_unfiltered_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['round_1_vcf'] | |
| Input should be 'round_1_vcf' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| out.1.literal['log'] | |
| Input should be 'log' [type=literal_error, input_value='round_0_hap_mixed_unphased.vcf', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 2 test cases to validate for tool medaka_consensus_pipeline / 1.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/medaka/medaka_consensus.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| out | |
| Field required [type=missing, input_value={'i': 'basecalls.fastq', 'd': 'assembly.fasta'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool medaka_variant / 1.3.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/medaka/variant.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool medaka_consensus / 1.3.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/medaka/consensus.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| out | |
| Field required [type=missing, input_value={'bam': 'alignment.bam', 'regions_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool simple_weather / 0.1.2 (@ /Users/jxc755/workspace/tools-iuc/tools/weather_app/simple_weather.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool picrust_normalize_by_copy_number / 1.1.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/normalize_by_copy_number.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Test Case 2: validation failed - Invalid parameter name found source | |
| Found 3 test cases to validate for tool picrust_categorize / 1.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/categorize_by_function.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool picrust_predict_metagenomes / 1.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/predict_metagenomes.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| normalize_by_function | |
| Input should be a valid boolean [type=bool_type, input_value='--normalize_by_function', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| normalize_by_otu | |
| Input should be a valid boolean [type=bool_type, input_value='--normalize_by_otu', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool picrust_format_tree_and_trait_table / 1.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/format_tree_and_trait_table.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool picrust_compare_biom / 1.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/compare_biom.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| not_relative_abundance_scores | |
| Input should be a valid boolean [type=bool_type, input_value='--not_relative_abundance_scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| not_relative_abundance_scores | |
| Input should be a valid boolean [type=bool_type, input_value='--not_relative_abundance_scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool picrust_metagenome_contributions / 1.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/picrust/metagenome_contributions.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source | |
| Found 2 test cases to validate for tool jq / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/jq/jq.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| tsv | |
| Input should be a valid boolean [type=bool_type, input_value='| @tsv', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tsv | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool snpeff_sars_cov_2 / 4.5covid19 (@ /Users/jxc755/workspace/tools-iuc/tools/snpeff-covid19/snpEff.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| annotations | |
| Field required [type=missing, input_value={'input': 'input.vcf', 'i...'generate_stats': False}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| filterOut | |
| Field required [type=missing, input_value={'input': 'input.vcf', 'i...'generate_stats': False}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool migmap / 1.0.3+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/migmap/migmap.xml) | |
| Test Case 1: validation failed - 7 validation errors for DynamicModelForTool | |
| receptor_list | |
| Field required [type=missing, input_value={'input': 'test_stop_codo... 'by_read': '--by-read'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| allow_incomplete | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-incomplete', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| all_alleles | |
| Input should be a valid boolean [type=bool_type, input_value='--all-alleles', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_no_cdr3 | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-no-cdr3', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_noncanonical | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-noncanonical', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_noncoding | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-noncoding', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| by_read | |
| Input should be a valid boolean [type=bool_type, input_value='--by-read', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 7 validation errors for DynamicModelForTool | |
| receptor_list | |
| Field required [type=missing, input_value={'input': 'test_stop_codo... 'by_read': '--by-read'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| allow_incomplete | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-incomplete', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| all_alleles | |
| Input should be a valid boolean [type=bool_type, input_value='--all-alleles', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_no_cdr3 | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-no-cdr3', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_noncanonical | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-noncanonical', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| allow_noncoding | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-noncoding', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| by_read | |
| Input should be a valid boolean [type=bool_type, input_value='--by-read', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| receptor_list | |
| Field required [type=missing, input_value={'input': 'test_out_of_fr... 'by_read': '--by-read'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| allow_noncoding | |
| Input should be a valid boolean [type=bool_type, input_value='--allow-noncoding', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| by_read | |
| Input should be a valid boolean [type=bool_type, input_value='--by-read', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool bam_to_scidx / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/bam_to_scidx/bam_to_scidx.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool discosnp_rad / 2.5.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/discosnp_RAD.xml) | |
| Test Case 1: validation failed - Invalid parameter name found b | |
| Found 1 test cases to validate for tool commet / 24.7.14+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/commet.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_type | |
| Found 2 test cases to validate for tool takeabreak / 1.1.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/takeabreak.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool discosnp_pp / 2.5.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/discosnp_pp.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool mapsembler2 / 2.2.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/mapsembler2.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool kissplice / 2.4.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/kissplice.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool lordec / 0.9+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/colibread/lordec.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool bctools_extract_barcodes / 0.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/extract_bcs.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_extract_alignment_ends / 0.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/extract_aln_ends.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_convert_to_binary_barcode / 0.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/convert_bc_to_binary_RY.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_extract_crosslinked_nucleotides / @VERSION+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/coords2clnt.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_remove_tail / 0.2.2 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/remove_tail.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_merge_pcr_duplicates / 0.2.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/merge_pcr_duplicates.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bctools_remove_spurious_events / 0.2.2+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/bctools/rm_spurious_events.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool unicycler / 0.4.8.0 (@ /Users/jxc755/workspace/tools-iuc/tools/unicycler/unicycler.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| rotation.no_rotate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| pilon.no_pilon | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| rotation.no_rotate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| pilon.no_pilon | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| rotation.no_rotate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool idba_hybrid / 1.1.3 (@ /Users/jxc755/workspace/tools-iuc/tools/idba_ud/idba_hybrid.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 're...rence': 'reference.fa'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 're...'reference': 'test_id'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 're...ion': 299, 'max_gap': 2}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool idba_tran / 1.1.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/idba_ud/idba_tran.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 'mi...max_component_size': 29}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool idba_ud / 1.1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/idba_ud/idba_ud.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 're...d_level_5': 'merged.fa'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 'mi...rt': 2, 'seed_kmer': 29}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| other | |
| Field required [type=missing, input_value={'read': 'merged.fa', 'mi...0.96, 'max_mismatch': 2}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validated | |
| Found 3 test cases to validate for tool berokka / 0.2.3 (@ /Users/jxc755/workspace/tools-iuc/tools/berokka/berokka.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - Invalid parameter name found filter_select | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool scanpy_remove_confounders / 1.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/remove_confounders.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 10 test cases to validate for tool scanpy_cluster_reduce_dimension / 1.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/cluster_reduce_dimension.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Found 12 test cases to validate for tool scanpy_inspect / 1.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/inspect.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validation failed - Invalid parameter name found method|tl_rank_genes_groups_method|solver|penalty|random_state | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Found 4 test cases to validate for tool scanpy_normalize / 1.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/normalize.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 0 test cases to validate for tool scanpy_filter / 1.7.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/filter.xml) | |
| Found 28 test cases to validate for tool scanpy_plot / 1.7.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/scanpy/plot.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validation failed - Invalid parameter name found method|matplotlib_pyplot_imshow|cmap | |
| Test Case 7: validation failed - Invalid parameter name found method|violin_plot|stripplot|size | |
| Test Case 8: validation failed - Invalid parameter name found method|violin_plot|stripplot|size | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Test Case 14: validated | |
| Test Case 15: validated | |
| Test Case 16: validated | |
| Test Case 17: validated | |
| Test Case 18: validated | |
| Test Case 19: validated | |
| Test Case 20: validated | |
| Test Case 21: validated | |
| Test Case 22: validated | |
| Test Case 23: validated | |
| Test Case 24: validated | |
| Test Case 25: validated | |
| Test Case 26: validated | |
| Test Case 27: validated | |
| Test Case 28: validation failed - Invalid parameter name found method|violin_plot|stripplot|size | |
| Found 6 test cases to validate for tool ivar_trim / 1.3.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/ivar/ivar_trim.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| primer.__absent__.input_bed | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| primer.__absent__.input_bed | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 1 test cases to validate for tool ivar_filtervariants / 1.3.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ivar/ivar_filtervariants.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool ivar_variants / 1.3.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/ivar/ivar_variants.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool ivar_removereads / 1.3.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/ivar/ivar_removereads.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool ivar_consensus / 1.3.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/ivar/ivar_consensus.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool iqtree / 2.1.2+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/iqtree/iqtree.xml) | |
| Test Case 1: validation failed - Invalid parameter name found seed | |
| Test Case 2: validation failed - Invalid parameter name found seed | |
| Test Case 3: validation failed - Invalid parameter name found seed | |
| Test Case 4: validation failed - Invalid parameter name found s | |
| Test Case 5: validation failed - Invalid parameter name found s | |
| Test Case 6: validation failed - Invalid parameter name found s | |
| Test Case 7: validation failed - Invalid parameter name found s | |
| Found 2 test cases to validate for tool fastqe / 0.2.6+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/fastqe/fastqe.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| tpe | |
| Field required [type=missing, input_value={'input': 'test.fq,test2.fq'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| tpe | |
| Field required [type=missing, input_value={'input': 'test.fq.gz,test2.fq.gz'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool codeml / 4.9+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/codeml/codeml.xml) | |
| Test Case 1: validation failed - Invalid parameter name found adv.fix_omega | |
| Test Case 2: validation failed - Invalid parameter name found adv.fix_omega | |
| Test Case 3: validation failed - Invalid parameter name found adv.fix_omega | |
| Found 2 test cases to validate for tool seurat / 4.0.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/seurat/seurat.xml) | |
| Test Case 1: validation failed - Invalid parameter name found adv|numPCs | |
| Test Case 2: validation failed - Invalid parameter name found adv|numPCs | |
| Found 6 test cases to validate for tool deepvariant / 1.2.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/deepvariant/deepvariant.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 1 test cases to validate for tool structure / 2.3.4 (@ /Users/jxc755/workspace/tools-iuc/tools/structure/structure.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool nanocompore_db / 1.0.0rc3.post2+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/nanocompore/nanocompore_db.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool nanocompore_sampcomp / 1.0.0rc3.post2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/nanocompore/sampcomp.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| ap.comparison_methods | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| ap.out | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool crossmap_bam / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_bam.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Test Case 2: validation failed - Invalid parameter name found index_source | |
| Found 2 test cases to validate for tool crossmap_bw / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_bigwig.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Test Case 2: validation failed - Invalid parameter name found index_source | |
| Found 5 test cases to validate for tool crossmap_bed / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_bed.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Test Case 2: validation failed - Invalid parameter name found index_source | |
| Test Case 3: validation failed - Invalid parameter name found index_source | |
| Test Case 4: validation failed - Invalid parameter name found index_source | |
| Test Case 5: validation failed - Invalid parameter name found index_source | |
| Found 2 test cases to validate for tool crossmap_wig / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_wig.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Test Case 2: validation failed - Invalid parameter name found index_source | |
| Found 1 test cases to validate for tool crossmap_vcf / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_vcf.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| seq_source.__absent__.input | |
| Field required [type=missing, input_value={'chain_source': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool crossmap_region / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_region.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Found 3 test cases to validate for tool crossmap_gff / 0.5.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/crossmap/crossmap_gff.xml) | |
| Test Case 1: validation failed - Invalid parameter name found index_source | |
| Test Case 2: validation failed - Invalid parameter name found index_source | |
| Test Case 3: validation failed - Invalid parameter name found index_source | |
| Found 1 test cases to validate for tool qq_manhattan / 0.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qq_tools/qq_manhattan.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool sam_dump / 2.11.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/sra-tools/sam_dump.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_select | |
| Found 7 test cases to validate for tool fastq_dump / 2.11.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/sra-tools/fastq_dump.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_select | |
| Test Case 2: validation failed - Invalid parameter name found input_select | |
| Test Case 3: validation failed - Invalid parameter name found input_select | |
| Test Case 4: validation failed - Invalid parameter name found input_select | |
| Test Case 5: validation failed - Invalid parameter name found input_select | |
| Test Case 6: validation failed - Invalid parameter name found input_select | |
| Test Case 7: validation failed - Invalid parameter name found input_select | |
| Found 6 test cases to validate for tool fasterq_dump / 2.11.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/sra-tools/fasterq_dump.xml) | |
| Test Case 1: validation failed - Invalid parameter name found input_select | |
| Test Case 2: validation failed - Invalid parameter name found input_select | |
| Test Case 3: validation failed - Invalid parameter name found input_select | |
| Test Case 4: validation failed - Invalid parameter name found input_select | |
| Test Case 5: validation failed - Invalid parameter name found input_select | |
| Test Case 6: validation failed - Invalid parameter name found input_select | |
| Found 3 test cases to validate for tool bbtools_bbmap / 1.0.0+galaxy1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bbtools/bbmap.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bbtools_bbduk / 1.0.0+galaxy1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bbtools/bbduk.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool bbtools_callvariants / 1.0.0+galaxy1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/bbtools/callvariants.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool datamash_transpose / 1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/datamash/datamash-transpose.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool datamash_reverse / 1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/datamash/datamash-reverse.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool datamash_ops / 1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/datamash/datamash-ops.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool metaphlan / 3.0.13+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/metaphlan/metaphlan.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validation failed - Invalid parameter name found in|selector | |
| Test Case 7: validated | |
| Found 1 test cases to validate for tool merge_metaphlan_tables / 3.0.13+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/metaphlan/merge_metaphlan_tables.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool customize_metaphlan_database / 3.0.13+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/metaphlan/customize_metaphlan_database.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool extract_metaphlan_database / 3.0.13+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/metaphlan/extract_metaphlan_database.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool compose_text_param / 0.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/compose_text_param/compose_text_param.xml) | |
| Found 4 test cases to validate for tool taxonomy_filter_refseq / 0.3.0+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/taxonomy_filter_refseq/taxonomy_filter_refseq.xml) | |
| Test Case 1: validation failed - Invalid parameter name found taxonomy_source | |
| Test Case 2: validation failed - Invalid parameter name found taxonomy_source | |
| Test Case 3: validation failed - Invalid parameter name found taxonomy_source | |
| Test Case 4: validation failed - Invalid parameter name found taxonomy_source | |
| Found 2 test cases to validate for tool text_to_wordmatrix / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/simtext/text_to_wordmatrix.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool pubmed_by_queries / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/simtext/pubmed_by_queries.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| abstract | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool pmids_to_pubtator_matrix / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/simtext/pmids_to_pubtator_matrix.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool abstracts_by_pmids / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/simtext/abstracts_by_pmids.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool nonpareil / 3.1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/nonpareil/nonpareil.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| use_portion_in_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| mating.use_rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| mating.n_as_mismatches | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| use_portion_in_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| mating.use_rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| mating.n_as_mismatches | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 6 test cases to validate for tool sina / 1.7.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/sina/sina.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| eap.fskmernofast | |
| Input should be a valid boolean [type=bool_type, input_value='--fs-kmer-no-fast', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| eap.fskmernorel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validated | |
| Found 2 test cases to validate for tool pizzly / 0.37.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/pizzly/pizzly.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| kinput.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| kinput.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool kobas_identify / 2.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/kobas/kobas_identify.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool kobas_annotate / 2.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/kobas/kobas_annotate.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool lumpy_sv / 0.3.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/lumpy_sv/lumpy_sv.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool lumpy_prep / 0.3.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/lumpy_sv/lumpy_preprocessing.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool ococo / 0.1.2.6 (@ /Users/jxc755/workspace/tools-iuc/tools/ococo/ococo.xml) | |
| Test Case 1: validated | |
| Found 7 test cases to validate for tool tb_variant_filter / 0.3.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/tb_variant_filter/tb_variant_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| filter_options.yes.region_filter | |
| Field required [type=missing, input_value={'show_filter_options': '... 'indel_window_size': 5}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| filter_options.yes.region_filter | |
| Field required [type=missing, input_value={'show_filter_options': '...n_percentage_alt': 95.0}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| filter_options.yes.region_filter | |
| Field required [type=missing, input_value={'show_filter_options': '...n_percentage_alt': 30.0}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| filter_options.yes.region_filter | |
| Field required [type=missing, input_value={'show_filter_options': 'yes', 'min_depth': 30}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Found 2 test cases to validate for tool raxml / 8.2.4+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/raxml/raxml.xml) | |
| Test Case 1: validation failed - Invalid parameter name found extraOptions | |
| Test Case 2: validation failed - Invalid parameter name found extraOptions | |
| Found 3 test cases to validate for tool vardict_java / 1.8.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/vardict/vardict.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool vsnp_determine_ref_from_data / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsnp/vsnp_determine_ref_from_data.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool vsnp_build_tables / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tools/vsnp/vsnp_build_tables.xml) | |
| Test Case 1: validation failed - Invalid parameter name found gbk_param | |
| Test Case 2: validation failed - Invalid parameter name found gbk_param | |
| Test Case 3: validation failed - Invalid parameter name found gbk_param | |
| Test Case 4: validation failed - Invalid parameter name found gbk_param | |
| Found 4 test cases to validate for tool vsnp_statistics / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsnp/vsnp_statistics.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| input_type_cond.__absent__.read_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.samtools_idxstats | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.vsnp_azc | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| input_type_cond.__absent__.read_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.samtools_idxstats | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.vsnp_azc | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| input_type_cond.__absent__.read_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.samtools_idxstats | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.vsnp_azc | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 3 validation errors for DynamicModelForTool | |
| input_type_cond.__absent__.read_type_cond.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.samtools_idxstats | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| input_type_cond.__absent__.vsnp_azc | |
| Field required [type=missing, input_value={'read_type_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool vsnp_add_zero_coverage / 1.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsnp/vsnp_add_zero_coverage.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source | |
| Test Case 2: validation failed - Invalid parameter name found reference_source | |
| Found 4 test cases to validate for tool vsnp_get_snps / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/tools/vsnp/vsnp_get_snps.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_zc_vcf_type_cond.__absent__.input_zc_vcf_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_zc_vcf_type_cond.__absent__.input_zc_vcf_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_zc_vcf_type_cond.__absent__.input_zc_vcf_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| input_zc_vcf_type_cond.__absent__.input_zc_vcf_collection | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| all_isolates | |
| Input should be a valid boolean [type=bool_type, input_value='--all_isolates', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool ngmlr / 0.2.7 (@ /Users/jxc755/workspace/tools-iuc/tools/ngmlr/ngmlr.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 6 test cases to validate for tool gatk4_mutect2 / 4.1.7.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/gatk4/gatk4_Mutect2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_sequence | |
| Test Case 2: validation failed - Invalid parameter name found reference_sequence | |
| Test Case 3: validation failed - Invalid parameter name found reference_sequence | |
| Test Case 4: validation failed - Invalid parameter name found reference_sequence | |
| Test Case 5: validation failed - Invalid parameter name found reference_sequence | |
| Test Case 6: validation failed - Invalid parameter name found reference_sequence | |
| Found 3 test cases to validate for tool lofreq_indelqual / 2.1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/lofreq/lofreq_indelqual.xml) | |
| Test Case 1: validation failed - Invalid parameter name found selector | |
| Test Case 2: validation failed - Invalid parameter name found selector | |
| Test Case 3: validation failed - Invalid parameter name found selector | |
| Found 5 test cases to validate for tool lofreq_call / 2.1.5+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/lofreq/lofreq_call.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_selector | |
| Test Case 2: validation failed - Invalid parameter name found ref_selector | |
| Test Case 3: validation failed - Invalid parameter name found ref_selector | |
| Test Case 4: validation failed - Invalid parameter name found ref_selector | |
| Test Case 5: validation failed - Invalid parameter name found ref_selector | |
| Found 5 test cases to validate for tool lofreq_alnqual / 2.1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/lofreq/lofreq_alnqual.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_selector | |
| Test Case 2: validation failed - Invalid parameter name found ref_selector | |
| Test Case 3: validation failed - Invalid parameter name found ref_selector | |
| Test Case 4: validation failed - Invalid parameter name found ref_selector | |
| Test Case 5: validation failed - Invalid parameter name found ref_selector | |
| Found 3 test cases to validate for tool lofreq_filter / 2.1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/lofreq/lofreq_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool lofreq_viterbi / 2.1.5+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/lofreq/lofreq_viterbi.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ref_selector | |
| Test Case 2: validation failed - Invalid parameter name found ref_selector | |
| Found 2 test cases to validate for tool macs2_bdgpeakcall / 2.1.1.20160309.0 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_bdgpeakcall.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool macs2_filterdup / 2.1.1.20160309.1 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_filterdup.xml) | |
| Test Case 1: validation failed - Invalid parameter name found keep_dup_options_selector | |
| Found 0 test cases to validate for tool macs2_callpeak / 2.1.1.20160309.6 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_callpeak.xml) | |
| Found 1 test cases to validate for tool macs2_bdgdiff / 2.1.1.20160309.1 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_bdgdiff.xml) | |
| Test Case 1: validation failed - Invalid parameter name found depth1 | |
| Found 1 test cases to validate for tool macs2_randsample / 2.1.1.20160309.1 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_randsample.xml) | |
| Test Case 1: validation failed - Invalid parameter name found method_options_selector | |
| Found 0 test cases to validate for tool macs2_predictd / 2.1.1.20160309.1 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_predictd.xml) | |
| Found 1 test cases to validate for tool macs2_bdgbroadcall / 2.1.1.20160309.0 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_bdgbroadcall.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool macs2_refinepeak / 2.1.1.20160309.1 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_refinepeak.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool macs2_bdgcmp / 2.1.1.20160309.0 (@ /Users/jxc755/workspace/tools-iuc/tools/macs2/macs2_bdgcmp.xml) | |
| Test Case 1: validation failed - Invalid parameter name found bdgcmp_options_selector | |
| Found 0 test cases to validate for tool ena_upload / 0.4.3 (@ /Users/jxc755/workspace/tools-iuc/tools/ena_upload/ena_upload.xml) | |
| Found 3 test cases to validate for tool deg_annotate / 1.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/deg_annotate/deg_annotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool column_remove_by_header / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/tools/column_remove_by_header/column_remove_by_header.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| headers | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| keep_columns | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| headers | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| keep_columns | |
| Input should be a valid boolean [type=bool_type, input_value='--keep', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool heinz / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/heinz/heinz.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool heinz_bum / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/heinz/bum.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool heinz_scoring / 1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/heinz/heinz_scoring.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_bum | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_bum | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool heinz_visualization / 0.1.1 (@ /Users/jxc755/workspace/tools-iuc/tools/heinz/visualization.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool seacr / 1.3+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/seacr/seacr.xml) | |
| Found 2 test cases to validate for tool nugen_nudup / 2.3.3 (@ /Users/jxc755/workspace/tools-iuc/tools/nugen_nudup/nugen_nudup.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool allegro / 2.0 (@ /Users/jxc755/workspace/tools-iuc/tools/allegro/allegro.xml) | |
| Found 10 test cases to validate for tool gffread / 2.2.1.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/gffread/gffread.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'ecoli-k12.gff3...ute_preservation': '-F'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| full_gff_attribute_preservation | |
| Input should be a valid boolean [type=bool_type, input_value='-F', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - Invalid parameter name found region_filter | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'Homo_sapiens.G...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| filtering | |
| Field required [type=missing, input_value={'input': 'stop_codons.gt...genome': {}, 'gffs': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool bamleftalign / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/freebayes/leftalign.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool freebayes / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tools/freebayes/freebayes.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.batchmode.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 3 test cases to validate for tool tb_profiler_profile / 3.0.8+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/tb-profiler/tb_profiler_profile.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_or_bam.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_or_bam.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| fastq_or_bam.__absent__.read1 | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 11 test cases to validate for tool fastp / 0.20.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/fastp/fastp.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 11: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.in1 | |
| Field required [type=missing, input_value={'adapter_trimming_option...l_trimming_options': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool intervene_pairwise / 0.6.5 (@ /Users/jxc755/workspace/tools-iuc/tools/intervene/intervene_pairwise.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| barcolor | |
| Field required [type=missing, input_value={'input': 'a.bed,b.bed,c.bed'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool intervene_upset / 0.6.5 (@ /Users/jxc755/workspace/tools-iuc/tools/intervene/intervene_upset.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| mbcolor | |
| Field required [type=missing, input_value={'input': 'a.txt,b.txt,c.txt'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sbcolor | |
| Field required [type=missing, input_value={'input': 'a.txt,b.txt,c.txt'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| mbcolor | |
| Field required [type=missing, input_value={'input': 'a.bed,b.bed,c.bed'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| sbcolor | |
| Field required [type=missing, input_value={'input': 'a.bed,b.bed,c.bed'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 10 test cases to validate for tool jbrowse / 1.16.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/jbrowse/jbrowse.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - Invalid parameter name found track_groups_0|data_tracks_0|data_format|jbcolor_scale|color|color_select | |
| Test Case 5: validation failed - Invalid parameter name found track_groups_0|data_tracks_0|data_format|jbcolor_scale|color|color_select | |
| Test Case 6: validation failed - Invalid parameter name found track_groups_0|data_tracks_0|data_format|jbcolor_scale|color|color_select | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validation failed - Invalid parameter name found reference_genome|genome | |
| Test Case 10: validated | |
| Found 0 test cases to validate for tool jbrowse_to_standalone / 1.16.11+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/jbrowse/jbrowse-fromdir.xml) | |
| Found 3 test cases to validate for tool fargene / 0.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tools/fargene/fargene.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - Invalid parameter name found inputs|models | |
| Found 1 test cases to validate for tool graphlan / 1.1.3 (@ /Users/jxc755/workspace/tools-iuc/tools/graphlan/graphlan.xml) | |
| Test Case 1: validation failed - Invalid parameter name found format | |
| Found 1 test cases to validate for tool graphlan_annotate / 1.1.3 (@ /Users/jxc755/workspace/tools-iuc/tools/graphlan/graphlan_annotate.xml) | |
| Test Case 1: validated | |
| Found 5 test cases to validate for tool bandage_image / 0.8.1+galaxy3 (@ /Users/jxc755/workspace/tools-iuc/tools/bandage/bandage_image.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| names | |
| Input should be a valid boolean [type=bool_type, input_value='--names', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| lengths | |
| Input should be a valid boolean [type=bool_type, input_value='--lengths', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| names | |
| Input should be a valid boolean [type=bool_type, input_value='--names', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| lengths | |
| Input should be a valid boolean [type=bool_type, input_value='--lengths', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool bandage_info / 0.8.1+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tools/bandage/bandage_info.xml) | |
| Test Case 1: validation failed - Invalid parameter name found select_mode | |
| Test Case 2: validation failed - Invalid parameter name found select_mode | |
| Found 6 test cases to validate for tool sansa_annotate / 0.0.8+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tools/sansa/annotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 2 test cases to validate for tool qiime_multiple_split_libraries_fastq / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/multiple_split_libraries_fastq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool qiime_alpha_rarefaction / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/alpha_rarefaction.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_intermediate_files | |
| Input should be a valid boolean [type=bool_type, input_value='--retain_intermediate_files', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool qiime_split_libraries / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/split_libraries.xml) | |
| Test Case 1: validation failed - 7 validation errors for DynamicModelForTool | |
| trim_seq_length | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| keep_primer | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| keep_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_bc_correction | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_primers | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| truncate_ambi_bases | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool qiime_multiple_join_paired_ends / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/multiple_join_paired_ends.xml) | |
| Test Case 1: validation failed - Invalid parameter name found barcode_indicator | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool qiime_validate_mapping_file / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/validate_mapping_file.xml) | |
| Test Case 1: validation failed - 5 validation errors for DynamicModelForTool | |
| verbose | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| not_barcoded | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| variable_len_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_primer_check | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_html | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 6 test cases to validate for tool qiime_filter_samples_from_otu_table / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/filter_samples_from_otu_table.xml) | |
| Test Case 1: validation failed - Invalid parameter name found type | |
| Test Case 2: validation failed - Invalid parameter name found type | |
| Test Case 3: validation failed - Invalid parameter name found type | |
| Test Case 4: validation failed - Invalid parameter name found type | |
| Test Case 5: validation failed - Invalid parameter name found type | |
| Test Case 6: validation failed - Invalid parameter name found type | |
| Found 9 test cases to validate for tool qiime_align_seqs / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/align_seqs.xml) | |
| Test Case 1: validation failed - Invalid parameter name found alignment_method | |
| Test Case 2: validation failed - Invalid parameter name found alignment_method | |
| Test Case 3: validation failed - Invalid parameter name found alignment_method | |
| Test Case 4: validation failed - Invalid parameter name found alignment_method | |
| Test Case 5: validation failed - Invalid parameter name found alignment_method | |
| Test Case 6: validation failed - Invalid parameter name found alignment_method | |
| Test Case 7: validation failed - Invalid parameter name found alignment_method | |
| Test Case 8: validation failed - Invalid parameter name found alignment_method | |
| Test Case 9: validation failed - Invalid parameter name found alignment_method | |
| Found 2 test cases to validate for tool qiime_beta_diversity / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/beta_diversity.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| full_tree | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| full_tree | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool qiime_filter_alignment / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/filter_alignment.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| suppress_lane_mask_filter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| remove_outliers | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| suppress_lane_mask_filter | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_lane_mask_filter', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| remove_outliers | |
| Input should be a valid boolean [type=bool_type, input_value='--remove_outliers', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| suppress_lane_mask_filter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| remove_outliers | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool qiime_assign_taxonomy / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/assign_taxonomy.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 6 test cases to validate for tool qiime_make_phylogeny / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/make_phylogeny.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 2 test cases to validate for tool qiime_alpha_diversity / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/alpha_diversity.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| metrics | |
| Field required [type=missing, input_value={'input_path': 'alpha_diversity/otu_table.biom'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validated | |
| Found 5 test cases to validate for tool qiime_extract_barcodes / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/extract_barcodes.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| rev_comp_bc1 | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_bc1', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| attempt_read_reorientation | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_header_match | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| rev_comp_bc1 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| type.barcode_paired_end.rev_comp_bc2 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| attempt_read_reorientation | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_header_match | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 4 validation errors for DynamicModelForTool | |
| rev_comp_bc1 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| type.barcode_paired_end.rev_comp_bc2 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| attempt_read_reorientation | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_header_match | |
| Input should be a valid boolean [type=bool_type, input_value='--disable_header_match', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 4 validation errors for DynamicModelForTool | |
| rev_comp_bc1 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| type.barcode_paired_stitched.switch_bc_order | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| attempt_read_reorientation | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_header_match | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 3 validation errors for DynamicModelForTool | |
| rev_comp_bc1 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| attempt_read_reorientation | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| disable_header_match | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool qiime_plot_taxa_summary / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/plot_taxa_summary.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| include_html_legend | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| include_html_legend | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| include_html_legend | |
| Input should be a valid boolean [type=bool_type, input_value='--include_html_legend', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| include_html_legend | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 5 test cases to validate for tool qiime_split_libraries_fastq / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/split_libraries_fastq.xml) | |
| Test Case 1: validation failed - 6 validation errors for DynamicModelForTool | |
| store_qual_scores | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| store_demultiplexed_fastq | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_mapping_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_mapping_barcodes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 6 validation errors for DynamicModelForTool | |
| store_qual_scores | |
| Input should be a valid boolean [type=bool_type, input_value='--store_qual_scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| store_demultiplexed_fastq | |
| Input should be a valid boolean [type=bool_type, input_value='--store_demultiplexed_fastq', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_mapping_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_mapping_barcodes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 6 validation errors for DynamicModelForTool | |
| store_qual_scores | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| store_demultiplexed_fastq | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_mapping_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_mapping_barcodes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 6 validation errors for DynamicModelForTool | |
| store_qual_scores | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| store_demultiplexed_fastq | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_mapping_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_mapping_barcodes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 6 validation errors for DynamicModelForTool | |
| store_qual_scores | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| store_demultiplexed_fastq | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| retain_unassigned_reads | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_barcode | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp_mapping_barcodes | |
| Input should be a valid boolean [type=bool_type, input_value='--rev_comp_mapping_barcodes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| rev_comp | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool qiime_core_diversity / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/core_diversity_analyses.xml) | |
| Test Case 1: validation failed - 6 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| phylogenetic.__absent__.tree_fp | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| suppress_taxa_summary | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_beta_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_beta_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_alpha_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_alpha_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_group_significance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 6 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| phylogenetic.__absent__.tree_fp | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| suppress_taxa_summary | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_taxa_summary', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_beta_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_alpha_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_alpha_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_group_significance | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_group_significance', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 6 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| phylogenetic.__absent__.tree_fp | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| suppress_taxa_summary | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_taxa_summary', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_beta_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_beta_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_alpha_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_group_significance | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_group_significance', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 6 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| phylogenetic.__absent__.tree_fp | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| suppress_taxa_summary | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_taxa_summary', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_beta_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_beta_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_alpha_diversity | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_alpha_diversity', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_group_significance | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_group_significance', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 4 test cases to validate for tool qiime_summarize_taxa_through_plots / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/summarize_taxa_through_plots.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| sort | |
| Input should be a valid boolean [type=bool_type, input_value='--sort', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validated | |
| Found 7 test cases to validate for tool qiime_filter_fasta / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/filter_fasta.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='--negate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| selection.__absent__.otu_map | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| negate | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 6 test cases to validate for tool qiime_make_otu_heatmap / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/make_otu_heatmap.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 4 validation errors for DynamicModelForTool | |
| no_log_transform | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_row_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_column_clustering | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool qiime_summarize_taxa / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/summarize_taxa.xml) | |
| Test Case 1: validation failed - 5 validation errors for DynamicModelForTool | |
| md_as_string | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| transposed_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_classic_table_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_biom_table_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 5 validation errors for DynamicModelForTool | |
| md_as_string | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| absolute_abundance | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| transposed_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_classic_table_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_biom_table_output | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool qiime_pick_open_reference_otus / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/pick_open_reference_otus.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_step4 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_taxonomy_assignment | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_align_and_tree | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_step4 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_taxonomy_assignment | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_taxonomy_assignment', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_align_and_tree | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_align_and_tree', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 4 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_step4 | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_taxonomy_assignment | |
| Input should be a valid boolean [type=bool_type, input_value='--suppress_taxonomy_assignment', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_align_and_tree | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool qiime_filter_taxa_from_otu_table / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/filter_taxa_from_otu_table.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool qiime_count_seqs / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/count_seqs.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool qiime_make_emperor / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/make_emperor.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| add_unique_columns | |
| Input should be a valid boolean [type=bool_type, input_value='--add_unique_columns', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| ignore_missing_samples | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| pct_variation_below_one | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| add_unique_columns | |
| Input should be a valid boolean [type=bool_type, input_value='--add_unique_columns', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| ignore_missing_samples | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| pct_variation_below_one | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 3 test cases to validate for tool qiime_filter_otus_from_otu_table / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/filter_otus_from_otu_table.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 4 test cases to validate for tool qiime_pick_closed_reference_otus / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/pick_closed_reference_otus.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| input_fp | |
| Field required [type=missing, input_value={'ref_seq': {'selector': ....txt'}}, 'parallel': ''}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| input_fp | |
| Field required [type=missing, input_value={'ref_seq': {'selector': ...ms.txt', 'parallel': ''}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| input_fp | |
| Field required [type=missing, input_value={'ref_seq': {'selector': ...onomy'}, 'parallel': ''}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| input_fp | |
| Field required [type=missing, input_value={'ref_seq': {'selector': ...nment'}, 'parallel': ''}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool qiime_compare_categories / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/compare_categories.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool qiime_beta_diversity_through_plots / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/beta_diversity_through_plots.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| suppress_emperor_plots | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 7 test cases to validate for tool qiime_pick_otus / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/pick_otus.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 7: validation failed - 1 validation error for DynamicModelForTool | |
| trie_prefilter | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool qiime_upgma_cluster / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/upgma_cluster.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool qiime_pick_rep_set / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/pick_rep_set.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| picking.__absent__.fasta_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool qiime_jackknifed_beta_diversity / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_core/jackknifed_beta_diversity.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| parallel | |
| Input should be a valid boolean [type=bool_type, input_value='--parallel', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 2 test cases to validate for tool qiime_make_otu_table / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_add_on/make_otu_table.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool qiime_collapse_samples / 1.9.1.0 (@ /Users/jxc755/workspace/tools-iuc/tools/qiime/qiime_add_on/collapse_samples.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool fasplit / 357 (@ /Users/jxc755/workspace/tools-iuc/tools/ucsc_tools/fasplit/fasplit.xml) | |
| Test Case 1: validation failed - Invalid parameter name found split_type | |
| Test Case 2: validation failed - Invalid parameter name found split_type | |
| Found 1 test cases to validate for tool ucsc-twobittofa / 377 (@ /Users/jxc755/workspace/tools-iuc/tools/ucsc_tools/twobittofa/twobittofa.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bwa_mem_index_builder_data_manager / 0.0.5 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_bwa_mem_index_builder/data_manager/bwa_mem_index_builder.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool data_manager_ncbi_taxonomy_sqlite / 1.0.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_ncbi_taxonomy_sqlite/data_manager/data_manager_ncbi_taxonomy_sqlite.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 11 test cases to validate for tool dada2_fetcher / 0.0.8 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_dada2/data_manager/dada2_fetcher.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Found 1 test cases to validate for tool kraken2_build_database / 2.1.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_build_kraken2_database/data_manager/kraken2_build_database.xml) | |
| Test Case 1: validation failed - Invalid parameter name found custom_fasta | |
| Found 2 test cases to validate for tool data_manager_mitos / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_mitos/data_manager/data_manager_mitos.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool bwameth_index_builder_data_manager / 1.0.0.2 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_bwameth_index_builder/data_manager/bwameth_index_builder.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool data_manager_plant_tribes_scaffolds_download / 1.1.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_plant_tribes_scaffolds_downloader/data_manager/data_manager_plant_tribes_scaffolds_download.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool data_manager_snpsift_dbnsfp / 4.1.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_snpsift_dbnsfp/data_manager/data_manager_snpsift_dbnsfp.xml) | |
| Test Case 1: validation failed - Invalid parameter name found src | |
| Found 1 test cases to validate for tool rna_star_index_builder_data_manager / 2.7.4a (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_star_index_builder/data_manager/rna_star_index_builder.xml) | |
| Test Case 1: validation failed - Invalid parameter name found sequence_name | |
| Found 1 test cases to validate for tool data_manager_selection_background / 1.0.3 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_selection_background/data_manager/data_manager_selection_background.xml) | |
| Test Case 1: validation failed - Invalid parameter name found source_selector | |
| Found 0 test cases to validate for tool data_manager_fetch_and_index_maf / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml) | |
| Found 2 test cases to validate for tool ncbi_taxonomy_fetcher / 1.0.3 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_ncbi_taxonomy/data_manager/ncbi_taxonomy_fetcher.xml) | |
| Test Case 1: validation failed - Invalid parameter name found database_id | |
| Test Case 2: validation failed - Invalid parameter name found database_id | |
| Found 1 test cases to validate for tool mash_sketch_builder / 2.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_mash_sketch_builder/data_manager/mash_sketch_builder.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_sequence_source.__absent__.input_sequence | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 0 test cases to validate for tool bowtie_color_space_index_builder_data_manager / 1.2.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_bowtie_index_builder/data_manager/bowtie_color_space_index_builder.xml) | |
| Found 0 test cases to validate for tool bowtie_index_builder_data_manager / 1.2.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_bowtie_index_builder/data_manager/bowtie_index_builder.xml) | |
| Found 1 test cases to validate for tool picard_index_builder_data_manager / 2.7.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_picard_index_builder/data_manager/picard_index_builder.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool busco_fetcher / 1.0.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_busco/data_manager/busco_fetcher.xml) | |
| Found 1 test cases to validate for tool data_manager_fetch_genome_all_fasta_dbkey / 0.0.4 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_genome_dbkeys_all_fasta/data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml) | |
| Test Case 1: validation failed - Invalid parameter name found dbkey | |
| Found 1 test cases to validate for tool bowtie2_index_builder_data_manager / 2.4.4+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_bowtie2_index_builder/data_manager/bowtie2_index_builder.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool kraken_database_builder / 1.1.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_build_kraken_database/data_manager/kraken_database_builder.xml) | |
| Found 1 test cases to validate for tool data_manager_metaphlan_download / 3.0.7+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_metaphlan_database_downloader/data_manager/data_manager_metaphlan_download.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vsnp_dnaprints_fetcher / 0.0.8 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_vsnp_dnaprints/data_manager/vsnp_dnaprints_fetcher.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool twobit_builder_data_manager / 0.0.4 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_twobit_builder/data_manager/twobit_builder.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool sam_fasta_index_builder / 0.0.5 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_sam_fasta_index_builder/data_manager/data_manager_sam_fasta_index_builder.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool data_manager_snpeff_download / 4.3.1t (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_snpeff/data_manager/data_manager_snpEff_download.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool data_manager_snpeff_databases / 4.3.1t (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_snpeff/data_manager/data_manager_snpEff_databases.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vsnp_genbank_fetcher / 0.0.8 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_vsnp_genbank/data_manager/vsnp_genbank_fetcher.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool data_manager_funannotate / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_funannotate/data_manager/funannotate.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool data_manager_primer_scheme_bedfiles / 0.0.13 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_primer_scheme_bedfiles/data_manager/install_primer_scheme_bedfiles.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.primers | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.primers | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input.__absent__.primers | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool data_manager_manual / 0.0.2 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_manual/data_manager/data_manager_manual.xml) | |
| Test Case 1: validation failed - 4 validation errors for DynamicModelForTool | |
| data_tables.0.data_table_name | |
| Input should be None [type=none_required, input_value='__dbkeys__', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| data_tables.0.columns.0.data_table_column_name | |
| Input should be None [type=none_required, input_value='value', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| data_tables.0.columns.1.data_table_column_name | |
| Input should be None [type=none_required, input_value='name', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| data_tables.0.columns.2.data_table_column_name | |
| Input should be None [type=none_required, input_value='len_path', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| Found 2 test cases to validate for tool homer_genome_preparse_data_manager / 4.11 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_homer_preparsed/data_manager/homer_genome_preparse.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool data_manager_cat / 5.0.3.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_cat/data_manager/data_manager_cat.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool salmon_index_builder_data_manager / 1.3.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_salmon_index_builder/data_manager/salmon_index_builder.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool data_manager_fetch_refseq / 0.0.20 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_refseq/data_manager/fetch_refseq.xml) | |
| Test Case 1: validation failed - Invalid parameter name found advanced_selector | |
| Test Case 2: validation failed - Invalid parameter name found advanced_selector | |
| Found 1 test cases to validate for tool data_manager_rsync_g2 / 0.0.3 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_rsync_g2/data_manager/data_manager_rsync.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| data_table_names.0 | |
| Input should be None [type=none_required, input_value='all_fasta', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| data_table_entries.0 | |
| Input should be None [type=none_required, input_value='eyJlbnRyeSI6IHsiZGJrZXki...SI6ICJhbGxfZmFzdGEifQ==', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/none_required | |
| Found 1 test cases to validate for tool kma_build_index / 1.2.21+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_build_kma_index/data_manager/kma_build_index.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool gene_annotation_fetcher_data_manager / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_fetch_gene_annotation/data_manager/gene_annotation_fetcher.xml) | |
| Found 2 test cases to validate for tool diamond_database_builder / 0.0.3 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_diamond_database_builder/data_manager/data_manager_diamond_database_builder.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool hisat2_index_builder_data_manager / 2.1.0 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_hisat2_index_builder/data_manager/hisat2_index_builder.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool data_manager_interproscan / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_interproscan/data_manager/interproscan.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool data_manager_humann_download / 3.0.0+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_humann_database_downloader/data_manager/data_manager_humann_download.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 14 test cases to validate for tool data_manager_fetch_mothur_reference_data / 0.2.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_mothur_toolsuite/data_manager/data_manager_fetch_mothur_reference_data.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Test Case 14: validated | |
| Found 1 test cases to validate for tool bracken_build_database / 2.5+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_build_bracken_database/data_manager/bracken_build_database.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool gatk_picard_index_builder / 0.0.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_gatk_picard_index_builder/data_manager/data_manager_gatk_picard_index_builder.xml) | |
| Found 2 test cases to validate for tool data_manager_pangolearn / 0.0.3 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_pangolearn/data_manager/pangolearn_dm.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool kallisto_index_builder_data_manager / 0.43.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_kallisto_index_builder/data_manager/kallisto_index_builder.xml) | |
| Found 1 test cases to validate for tool vsnp_excel_fetcher / 0.0.8 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_vsnp_excel/data_manager/vsnp_excel_fetcher.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool data_manager_gemini_download / 0.20.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_gemini_database_downloader/data_manager/data_manager_gemini_download.xml) | |
| Found 0 test cases to validate for tool data_manager_qiime_download / 1.9.1 (@ /Users/jxc755/workspace/tools-iuc/data_managers/data_manager_qiime_database_downloader/data_manager/data_manager_qiime_download.xml) | |
| Found 1 test cases to validate for tool snpEff / 4.3+T.galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpeff/snpEff.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| snpDb.__absent__.reg_section.regulation | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| annotations | |
| Field required [type=missing, input_value={'input': 'input.vcf', 'i...'generate_stats': False}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| filterOut | |
| Field required [type=missing, input_value={'input': 'input.vcf', 'i...'generate_stats': False}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool snpEff_build_gb / 4.3+T.galaxy4 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpeff/snpEff_create_db.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_gbk | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_gbk | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_gbk | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_gbk | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| input_type.__absent__.input_gbk | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool snpEff_get_chr_names / 4.3+T.galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpeff/snpeff_get_chr_names.xml) | |
| Test Case 1: validation failed - Invalid parameter name found genomeSrc | |
| Test Case 2: validation failed - Invalid parameter name found genomeSrc | |
| Found 2 test cases to validate for tool snpEff_databases / 4.3+T.galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpeff/snpEff_databases.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool snpEff_download / 4.3+T.galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpeff/snpEff_download.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool bacteria_tradis / 1.4.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/biotradis/bacteria_tradis.xml) | |
| Test Case 1: validation failed - Invalid parameter name found map_options | |
| Test Case 2: validation failed - Invalid parameter name found min_quality | |
| Found 1 test cases to validate for tool tradis_gene_insert_sites / 1.4.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/biotradis/tradis_gene_insert_sites.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool tradis_essentiality / 1.4.5+galaxy2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/biotradis/tradis_essentiality.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool kraken / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken/kraken.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool kraken-translate / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken/kraken-translate.xml) | |
| Test Case 1: validation failed - Invalid parameter name found mpa-format | |
| Found 1 test cases to validate for tool kraken-report / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken/kraken-report.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool kraken-mpa-report / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken/kraken-mpa-report.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| show_zeros | |
| Input should be a valid boolean [type=bool_type, input_value='--show-zeros', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| header_line | |
| Input should be a valid boolean [type=bool_type, input_value='--header-line', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool kraken-filter / 1.3.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken/kraken-filter.xml) | |
| Test Case 1: validated | |
| Found 4 test cases to validate for tool bamtools / 2.4.0.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools/bamtools.xml) | |
| Test Case 1: validation failed - Invalid parameter name found analysis_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found analysis_type_selector | |
| Test Case 3: validation failed - Invalid parameter name found analysis_type_selector | |
| Test Case 4: validation failed - Invalid parameter name found analysis_type_selector | |
| Found 1 test cases to validate for tool bamtools_split_tag / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_split/bamtools_split_tag.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool bamtools_split / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_split/bamtools_split.xml) | |
| Test Case 1: validation failed - Invalid parameter name found analysis_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found analysis_type_selector | |
| Found 1 test cases to validate for tool bamtools_split_ref / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_split/bamtools_split_ref.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bamtools_split_paired / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_split/bamtools_split_paired.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bamtools_split_mapped / 2.4.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_split/bamtools_split_mapped.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool bamFilter / 2.4.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/bamtools/bamtools_filter/bamtools-filter.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| conditions | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 5 test cases to validate for tool fastq_paired_end_interlacer / 1.2.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer/fastq_paired_end_interlacer.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.input1_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.input2_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.input1_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.input2_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.input1_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.input2_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.input1_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.input2_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| reads.__absent__.input1_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| reads.__absent__.input2_file | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 35 test cases to validate for tool fastq_groomer / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_groomer/fastq_groomer.xml) | |
| Test Case 1: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 3: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 4: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 5: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 6: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 7: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 8: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 9: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 10: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 11: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 12: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 13: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 14: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 15: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 16: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 17: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 18: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 19: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 20: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 21: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 22: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 23: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 24: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 25: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 26: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 27: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 28: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 29: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 30: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 31: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 32: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 33: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 34: validation failed - Invalid parameter name found options_type_selector | |
| Test Case 35: validation failed - Invalid parameter name found options_type_selector | |
| Found 2 test cases to validate for tool fastq_masker_by_quality / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality/fastq_masker_by_quality.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 4 test cases to validate for tool fastq_to_tabular / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_to_tabular/fastq_to_tabular.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool fastq_to_fasta_python / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastqtofasta/fastq_to_fasta.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 9 test cases to validate for tool fastq_filter / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_filter/fastq_filter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 2: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 3: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 4: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 5: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 6: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 7: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 8: validation failed - Invalid parameter name found base_offset_type | |
| Test Case 9: validation failed - Invalid parameter name found base_offset_type | |
| Found 5 test cases to validate for tool fastq_trimmer / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_trimmer/fastq_trimmer.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| keep_zero_length | |
| Input should be a valid boolean [type=bool_type, input_value='keep_zero_length', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| keep_zero_length | |
| Input should be a valid boolean [type=bool_type, input_value='exclude_zero_length', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| keep_zero_length | |
| Input should be a valid boolean [type=bool_type, input_value='exclude_zero_length', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| keep_zero_length | |
| Input should be a valid boolean [type=bool_type, input_value='exclude_zero_length', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| keep_zero_length | |
| Input should be a valid boolean [type=bool_type, input_value='exclude_zero_length', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool fastq_stats / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_stats/fastq_stats.xml) | |
| Test Case 1: validated | |
| Found 15 test cases to validate for tool fastq_manipulation / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_manipulation/fastq_manipulation.xml) | |
| Test Case 1: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 2: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 3: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 4: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 5: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 6: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 7: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 8: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 9: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 10: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 11: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 12: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 13: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 14: validation failed - Invalid parameter name found match_type_selector | |
| Test Case 15: validation failed - Invalid parameter name found match_type_selector | |
| Found 4 test cases to validate for tool fastq_paired_end_deinterlacer / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool fastq_paired_end_joiner / 2.0.1.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner/fastq_paired_end_joiner.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool tabular_to_fastq / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/tabular_to_fastq/tabular_to_fastq.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool fastq_paired_end_splitter / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter/fastq_paired_end_splitter.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool fastq_combiner / 1.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/galaxy_sequence_utils/fastq_combiner/fastq_combiner.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 1 test cases to validate for tool cuffquant / 2.2.1.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cuffquant/cuffquant_wrapper.xml) | |
| Test Case 1: validation failed - Invalid parameter name found do_bias_correction | |
| Found 1 test cases to validate for tool cuffcompare / 2.2.1.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cuffcompare/cuffcompare_wrapper.xml) | |
| Test Case 1: validation failed - Invalid parameter name found use_ref_annotation | |
| Found 1 test cases to validate for tool cuffmerge / 2.2.1.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cuffmerge/cuffmerge_wrapper.xml) | |
| Test Case 1: validation failed - Invalid parameter name found use_ref_annotation | |
| Found 1 test cases to validate for tool cuffnorm / 2.2.1.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cuffnorm/cuffnorm_wrapper.xml) | |
| Test Case 1: validated | |
| Found 0 test cases to validate for tool cufflinks / 2.2.1.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cufflinks/cufflinks_wrapper.xml) | |
| Found 3 test cases to validate for tool cuffdiff / 2.2.1.6 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/cufflinks/cuffdiff/cuffdiff_wrapper.xml) | |
| Test Case 1: validation failed - Invalid parameter name found do_bias_correction | |
| Test Case 2: validation failed - Invalid parameter name found do_bias_correction | |
| Test Case 3: validation failed - Invalid parameter name found do_bias_correction | |
| Found 0 test cases to validate for tool snpSift_dbnsfp / 4.3+t.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift_dbnsfp/snpSift_dbnsfp.xml) | |
| Found 1 test cases to validate for tool snpSift_rmInfo / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_rmInfo.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool snpSift_int / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_int.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 0 test cases to validate for tool snpsift_vartype / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_vartype.xml) | |
| Found 1 test cases to validate for tool snpSift_vcfCheck / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_vcfCheck.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool snpSift_caseControl / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_caseControl.xml) | |
| Test Case 1: validation failed - Invalid parameter name found ctrl_src | |
| Test Case 2: validation failed - Invalid parameter name found ctrl_src | |
| Test Case 3: validation failed - Invalid parameter name found ctrl_src | |
| Found 5 test cases to validate for tool snpSift_filter / 4.3+t.galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_filter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found expr | |
| Test Case 2: validation failed - Invalid parameter name found expr | |
| Test Case 3: validation failed - Invalid parameter name found expr | |
| Test Case 4: validation failed - Invalid parameter name found expr | |
| Test Case 5: validation failed - Invalid parameter name found mode | |
| Found 3 test cases to validate for tool snpSift_annotate / 4.3+t.galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_annotate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 3 test cases to validate for tool snpSift_extractFields / 4.3+t.galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift/snpSift_extractFields.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 0 test cases to validate for tool snpSift_geneSets / 4.3+t.0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/snpsift/snpsift_genesets/snpSift_geneSets.xml) | |
| Found 3 test cases to validate for tool kraken2 / 2.1.1+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/kraken2/kraken2/kraken2.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| single_paired.__absent__.input_sequences | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool vcffixup / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcffixup/vcffixup.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfflatten2 / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfflatten/vcfflatten.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfgeno2haplo / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfgeno2haplo/vcfgeno2haplo.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_vcf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool vcfannotategenotypes / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfannotategenotypes/vcfannotategenotypes.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool vcfvcfintersect / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfvcfintersect/vcfvcfintersect.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Test Case 2: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool vcfleftalign / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfleftalign/vcfleftalign.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool vcfannotate / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfannotate/vcfannotate.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfaddinfo / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfaddinfo/vcfaddinfo.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfselectsamples / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfselectsamples/vcfselectsamples.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfcommonsamples / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfcommonsamples/vcfcommonsamples.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool vcffilter2 / 1.0.0_rc3+galaxy3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcffilter/vcffilter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool vcfdistance / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfdistance/vcfdistance.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfgenotypes / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfgenotypes/vcfgenotypes.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfcombine / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfcombine/vcfcombine.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfcheck / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfcheck/vcfcheck.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_vcf | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool vcf2tsv / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcf2tsv/vcf2tsv.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool vcfbedintersect / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfbedintersect/vcfbedintersect.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| bed_vs_interval.__absent__.bed_input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| bed_vs_interval.__absent__.bed_input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool vcfbreakcreatemulti / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfbreakcreatemulti/vcfbreakcreatemulti.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool vcfrandomsample / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfrandomsample/vcfrandomsample.xml) | |
| Test Case 1: validation failed - Invalid parameter name found adv_options_selector | |
| Found 1 test cases to validate for tool vcfsort / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfsort/vcfsort.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool vcfprimers / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfprimers/vcfprimers.xml) | |
| Test Case 1: validation failed - Invalid parameter name found reference_source_selector | |
| Found 1 test cases to validate for tool vcfallelicprimitives / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfallelicprimitives/vcfallelicprimitives.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool vcfhethom / 1.0.0_rc3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/vcflib/vcfhethom/vcfhethom.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 31 test cases to validate for tool samtools_view / 1.13+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_view/samtools_view.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Test Case 10: validated | |
| Test Case 11: validated | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Test Case 14: validated | |
| Test Case 15: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 16: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 17: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...': 'no'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 18: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 19: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...SOME_I'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 20: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...st.bed'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {'select_...st.bed'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {'select_...st.bed'}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 21: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 22: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 23: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 24: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 25: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 26: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 27: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 28: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 29: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond_rg': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 30: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond...g': {}, 'tag': 'XS:-18'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond...g': {}, 'tag': 'XS:-18'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond...g': {}, 'tag': 'XS:-18'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 31: validation failed - 3 validation errors for DynamicModelForTool | |
| mode.selected_reads.filter_config.inclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond..._file': 'readnames.txt'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond..._file': 'readnames.txt'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mode.selected_reads.filter_config.exclusive_filter_all | |
| Field required [type=missing, input_value={'cond_region': {}, 'cond..._file': 'readnames.txt'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 2 test cases to validate for tool samtools_reheader / 2.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_reheader/samtools_reheader.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool samtools_idxstats / 2.0.4 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_idxstats/samtools_idxstats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 18 test cases to validate for tool samtools_fastx / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_fastx/samtools_fastx.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'samtools_fastx...,r2', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 8: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.001.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 9: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.002.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.002.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.002.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 10: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.003.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.003.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.003.sam...her', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 11: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 12: validation failed - 4 validation errors for DynamicModelForTool | |
| output_fmt_cond.fastqsanger.output_quality | |
| Input should be a valid boolean [type=bool_type, input_value='-O', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 13: validation failed - 4 validation errors for DynamicModelForTool | |
| output_fmt_cond.fastqsanger.output_quality | |
| Input should be a valid boolean [type=bool_type, input_value='-O', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.010.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 14: validation failed - 3 validation errors for DynamicModelForTool | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 15: validation failed - 4 validation errors for DynamicModelForTool | |
| copy_tags | |
| Input should be a valid boolean [type=bool_type, input_value='-t', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 16: validation failed - 4 validation errors for DynamicModelForTool | |
| copy_tags | |
| Input should be a valid boolean [type=bool_type, input_value='-t', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'-N', 'idxout_cond': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 17: validation failed - 5 validation errors for DynamicModelForTool | |
| output_fmt_cond.fastqsanger.ilumina_casava | |
| Input should be a valid boolean [type=bool_type, input_value='-i', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| copy_tags | |
| Input should be a valid boolean [type=bool_type, input_value='-t', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'index_format': 'n2i2'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'index_format': 'n2i2'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.005.sam...'index_format': 'n2i2'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 18: validation failed - 4 validation errors for DynamicModelForTool | |
| output_fmt_cond.fastqsanger.ilumina_casava | |
| Input should be a valid boolean [type=bool_type, input_value='-i', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| inclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclusive_filter_all | |
| Field required [type=missing, input_value={'input': 'bam2fq.004.sam...', 'barcode_tag': 'BC'}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool samtools_bedcov / 2.0.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_bedcov/samtools_bedcov.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 3 validation errors for DynamicModelForTool | |
| countdel | |
| Input should be a valid boolean [type=bool_type, input_value='-j', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 13 test cases to validate for tool samtools_stats / 2.0.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_stats/samtools_stats.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validation failed - 1 validation error for DynamicModelForTool | |
| remove_overlaps | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 10: validated | |
| Test Case 11: validation failed - 1 validation error for DynamicModelForTool | |
| remove_overlaps | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 12: validated | |
| Test Case 13: validated | |
| Found 3 test cases to validate for tool sam_to_bam / 2.1.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/sam_to_bam/sam_to_bam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 5 test cases to validate for tool samtools_bam_to_cram / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/bam_to_cram/samtools_bam_to_cram.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 4 test cases to validate for tool samtools_cram_to_bam / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/cram_to_bam/samtools_cram_to_bam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 9 test cases to validate for tool samtools_sort / 2.0.4 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_sort/samtools_sort.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Test Case 7: validated | |
| Test Case 8: validated | |
| Test Case 9: validated | |
| Found 3 test cases to validate for tool samtools_coverage / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_coverage/samtools_coverage.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| condition_input.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 3 validation errors for DynamicModelForTool | |
| condition_input.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 3 validation errors for DynamicModelForTool | |
| condition_input.__absent__.input | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 10 test cases to validate for tool samtools_markdup / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_markdup/samtools_markdup.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| remove | |
| Input should be a valid boolean [type=bool_type, input_value='-r', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| supp | |
| Input should be a valid boolean [type=bool_type, input_value='-S', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 4: validation failed - Invalid parameter name found stats | |
| Test Case 5: validation failed - Invalid parameter name found stats | |
| Test Case 6: validation failed - 1 validation error for DynamicModelForTool | |
| existing_tags | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 7: validation failed - Invalid parameter name found mode_selector | |
| Test Case 8: validation failed - Invalid parameter name found fails | |
| Test Case 9: validation failed - Invalid parameter name found select_oformat | |
| Test Case 10: validation failed - Invalid parameter name found select_oformat | |
| Found 3 test cases to validate for tool bam_to_sam / 2.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/bam_to_sam/bam_to_sam.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 2 test cases to validate for tool samtools_calmd / 2.0.3 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_calmd/samtools_calmd.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| addref_cond.__absent__.ref | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool samtools_fixmate / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_fixmate/samtools_fixmate.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| tempcigar | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validation failed - 1 validation error for DynamicModelForTool | |
| tempcigar | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool samtools_flagstat / 2.0.4 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_flagstat/samtools_flagstat.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Found 1 test cases to validate for tool samtools_split / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_split/samtools_split.xml) | |
| Test Case 1: validated | |
| Found 6 test cases to validate for tool samtools_mpileup / 2.1.5 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_mpileup/samtools_mpileup.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| advanced_options.advanced.filter_by_flags.filter.require_flags | |
| Field required [type=missing, input_value={'filter_flags': 'filter'...'exclude_flags': '4,16'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| advanced_options.advanced.disable_probabilistic_realignment | |
| Input should be a valid boolean [type=bool_type, input_value='-B', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 1 validation error for DynamicModelForTool | |
| advanced_options.advanced.skip_anomalous_read_pairs | |
| Input should be a valid boolean [type=bool_type, input_value='-A', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validated | |
| Test Case 6: validated | |
| Found 3 test cases to validate for tool samtools_phase / 2.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_phase/samtools_phase.xml) | |
| Test Case 1: validation failed - Invalid parameter name found option_sets | |
| Test Case 2: validation failed - Invalid parameter name found option_sets | |
| Test Case 3: validation failed - Invalid parameter name found option_sets | |
| Found 3 test cases to validate for tool samtools_slice_bam / 2.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_slice_bam/samtools_slice_bam.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| slice_method.__absent__.input_interval | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 1 validation error for DynamicModelForTool | |
| slice_method.__absent__.input_interval | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 1 validation error for DynamicModelForTool | |
| slice_method.__absent__.input_interval | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 7 test cases to validate for tool samtools_depth / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_depth/samtools_depth.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Test Case 7: validation failed - 2 validation errors for DynamicModelForTool | |
| additional_options.required_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| additional_options.skipped_flags | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 6 test cases to validate for tool samtools_merge / 1.13 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/samtools/samtools_merge/samtools_merge.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| idrg | |
| Input should be a valid boolean [type=bool_type, input_value='-c', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| idpg | |
| Input should be a valid boolean [type=bool_type, input_value='-p', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Test Case 5: validated | |
| Test Case 6: validation failed - Invalid parameter name found bed | |
| Found 1 test cases to validate for tool cshl_fastx_quality_statistics / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_quality_statistics/fastx_quality_statistics.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool cshl_fastx_renamer / 0.0.14+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_renamer/fastx_renamer.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool cshl_fastx_clipper / 1.0.3+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_clipper/fastx_clipper.xml) | |
| Test Case 1: validation failed - Invalid parameter name found maxmismatches | |
| Found 2 test cases to validate for tool cshl_fasta_nucleotides_changer / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fasta_nucleotide_changer/fasta_nucleotide_changer.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool cshl_fasta_formatter / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fasta_formatter/fasta_formatter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 3 test cases to validate for tool cshl_fastx_barcode_splitter / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_barcode_splitter/fastx_barcode_splitter.xml) | |
| Test Case 1: validation failed - Invalid parameter name found barcodeLocation | |
| Test Case 2: validation failed - Invalid parameter name found barcodeLocation | |
| Test Case 3: validation failed - Invalid parameter name found idxfile | |
| Found 4 test cases to validate for tool cshl_fastx_trimmer / 1.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_trimmer/fastx_trimmer.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Test Case 3: validated | |
| Test Case 4: validated | |
| Found 3 test cases to validate for tool cshl_fastq_to_fasta / 1.0.2 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastq_to_fasta/fastq_to_fasta.xml) | |
| Test Case 1: validated | |
| Test Case 2: validation failed - 4 validation errors for DynamicModelForTool | |
| SKIPN.literal[''] | |
| Input should be '' [type=literal_error, input_value='no', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| SKIPN.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='no', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| RENAMESEQ.literal['-r'] | |
| Input should be '-r' [type=literal_error, input_value='yes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| RENAMESEQ.literal[''] | |
| Input should be '' [type=literal_error, input_value='yes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 3: validation failed - 4 validation errors for DynamicModelForTool | |
| SKIPN.literal[''] | |
| Input should be '' [type=literal_error, input_value='no', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| SKIPN.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='no', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| RENAMESEQ.literal['-r'] | |
| Input should be '-r' [type=literal_error, input_value='yes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| RENAMESEQ.literal[''] | |
| Input should be '' [type=literal_error, input_value='yes', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 2 test cases to validate for tool cshl_fastx_reverse_complement / 1.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_reverse_complement/fastx_reverse_complement.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool cshl_fastq_quality_filter / 1.0.2+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastq_quality_filter/fastq_quality_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 1 test cases to validate for tool cshl_fastx_nucleotides_distribution / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_nucleotides_distribution/fastx_nucleotides_distribution.xml) | |
| Test Case 1: validated | |
| Found 2 test cases to validate for tool cshl_fastx_artifacts_filter / 1.0.1+galaxy0 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_artifacts_filter/fastx_artifacts_filter.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 2 test cases to validate for tool cshl_fasta_clipping_histogram / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fasta_clipping_histogram/fasta_clipping_histogram.xml) | |
| Test Case 1: validated | |
| Test Case 2: validated | |
| Found 6 test cases to validate for tool cshl_fastq_quality_converter / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastq_quality_converter/fastq_quality_converter.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 2: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 3: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 4: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 5: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='Numeric quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Test Case 6: validation failed - 2 validation errors for DynamicModelForTool | |
| QUAL_FORMAT.literal['-a'] | |
| Input should be '-a' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| QUAL_FORMAT.literal['-n'] | |
| Input should be '-n' [type=literal_error, input_value='ASCII (letters) quality scores', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 1 test cases to validate for tool cshl_fastq_quality_boxplot / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastq_quality_boxplot/fastq_quality_boxplot.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool cshl_fastx_collapser / 1.0.1 (@ /Users/jxc755/workspace/tools-iuc/tool_collections/fastx_toolkit/fastx_collapser/fastx_collapser.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rglasso_cox / 0.03 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/rglasso/rglasso_cox.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| model.__absent__.yvar_cols | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| logxform_cols | |
| Value error, invalid literal for int() with base 10: '' [type=value_error, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/value_error | |
| Found 1 test cases to validate for tool rg_nri / 0.03 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/rglasso/rg_nri.xml) | |
| Test Case 1: validated | |
| Found 3 test cases to validate for tool samtool_filter2 / 1.8+galaxy1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/samtool_filter2/samtool_filter2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found filter | |
| Test Case 2: validation failed - Invalid parameter name found filter | |
| Test Case 3: validation failed - Invalid parameter name found filter | |
| Found 1 test cases to validate for tool rgdifferentialcount / 0.28 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/differential_count_models/rgedgeRpaired_nocamera.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| useNDF | |
| Input should be a valid boolean [type=bool_type, input_value='', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool htseqsams2mxlocal / 0.5 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/htseq/htseqsams2mx.xml) | |
| Test Case 1: validated | |
| Found 1 test cases to validate for tool rdavidwebservice / 1.20.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/rdavidwebservice/rdavidwebservice.xml) | |
| Test Case 1: validation failed - 7 validation errors for DynamicModelForTool | |
| AnnotationCategories.with_AnnotationCategories.Functional_Categories | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.General_Annotations | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.Literature | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.Main_Accessions | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.Protein_Domains | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.Protein_Interactions | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| AnnotationCategories.with_AnnotationCategories.Tissue_Expression | |
| Field required [type=missing, input_value={'setAnnotationCategories...thways': 'KEGG_PATHWAY'}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool rgTF2 / 1.17 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/tool_factory_2/rgToolFactory2.xml) | |
| Test Case 1: validation failed - Invalid parameter name found make_Tool | |
| Found 1 test cases to validate for tool gatk2_reduce_reads / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/reduce_reads.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_variant_validate / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_validate.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_variant | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| dbsnp_rod_bind_type.__absent__.dbsnp_input_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| do_not_validate_filtered_records | |
| Input should be a valid boolean [type=bool_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool gatk2_variant_eval / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_eval.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_variants | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| dbsnp_rod_bind_type.__absent__.dbsnp_input_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_depth_of_coverage / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/depth_of_coverage.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_base_recalibrator / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/base_recalibrator.xml) | |
| Test Case 1: validation failed - 21 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| covariates.0.literal['ContextCovariate'] | |
| Input should be 'ContextCovariate' [type=literal_error, input_value='ReadGroupCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.0.literal['CycleCovariate'] | |
| Input should be 'CycleCovariate' [type=literal_error, input_value='ReadGroupCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.0.literal['RepeatLengthCovariate'] | |
| Input should be 'RepeatLengthCovariate' [type=literal_error, input_value='ReadGroupCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.0.literal['RepeatUnitCovariate'] | |
| Input should be 'RepeatUnitCovariate' [type=literal_error, input_value='ReadGroupCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.0.literal['RepeatUnitAndLengthCovariate'] | |
| Input should be 'RepeatUnitAndLengthCovariate' [type=literal_error, input_value='ReadGroupCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.1.literal['ContextCovariate'] | |
| Input should be 'ContextCovariate' [type=literal_error, input_value='HomopolymerCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.1.literal['CycleCovariate'] | |
| Input should be 'CycleCovariate' [type=literal_error, input_value='HomopolymerCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.1.literal['RepeatLengthCovariate'] | |
| Input should be 'RepeatLengthCovariate' [type=literal_error, input_value='HomopolymerCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.1.literal['RepeatUnitCovariate'] | |
| Input should be 'RepeatUnitCovariate' [type=literal_error, input_value='HomopolymerCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.1.literal['RepeatUnitAndLengthCovariate'] | |
| Input should be 'RepeatUnitAndLengthCovariate' [type=literal_error, input_value='HomopolymerCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.2.literal['ContextCovariate'] | |
| Input should be 'ContextCovariate' [type=literal_error, input_value='MinimumNQSCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.2.literal['CycleCovariate'] | |
| Input should be 'CycleCovariate' [type=literal_error, input_value='MinimumNQSCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.2.literal['RepeatLengthCovariate'] | |
| Input should be 'RepeatLengthCovariate' [type=literal_error, input_value='MinimumNQSCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.2.literal['RepeatUnitCovariate'] | |
| Input should be 'RepeatUnitCovariate' [type=literal_error, input_value='MinimumNQSCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.2.literal['RepeatUnitAndLengthCovariate'] | |
| Input should be 'RepeatUnitAndLengthCovariate' [type=literal_error, input_value='MinimumNQSCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.3.literal['ContextCovariate'] | |
| Input should be 'ContextCovariate' [type=literal_error, input_value='PositionCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.3.literal['CycleCovariate'] | |
| Input should be 'CycleCovariate' [type=literal_error, input_value='PositionCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.3.literal['RepeatLengthCovariate'] | |
| Input should be 'RepeatLengthCovariate' [type=literal_error, input_value='PositionCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.3.literal['RepeatUnitCovariate'] | |
| Input should be 'RepeatUnitCovariate' [type=literal_error, input_value='PositionCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| covariates.3.literal['RepeatUnitAndLengthCovariate'] | |
| Input should be 'RepeatUnitAndLengthCovariate' [type=literal_error, input_value='PositionCovariate', input_type=str] | |
| For further information visit https://errors.pydantic.dev/2.8/v/literal_error | |
| Found 0 test cases to validate for tool gatk2_variant_apply_recalibration / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_apply_recalibration.xml) | |
| Found 1 test cases to validate for tool gatk2_variant_combine / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_combine.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_variants | |
| List should have at least 1 item after validation, not 0 [type=too_short, input_value=[], input_type=list] | |
| For further information visit https://errors.pydantic.dev/2.8/v/too_short | |
| Found 1 test cases to validate for tool gatk2_variant_annotator / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_annotator.xml) | |
| Test Case 1: validation failed - 5 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_variant | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| annotations_type.__absent__.annotations | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| dbsnp_rod_bind_type.__absent__.dbsnp_input_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| annotation_group | |
| Field required [type=missing, input_value={'reference_source': {}, ..., 'gatk_param_type': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclude_annotations | |
| Field required [type=missing, input_value={'reference_source': {}, ..., 'gatk_param_type': {}}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_variant_filtration / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_filtration.xml) | |
| Test Case 1: validation failed - 3 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_variant | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| mask_rod_bind_type.__absent__.input_mask_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| missing_values_in_expressions_should_evaluate_as_failing | |
| Input should be a valid boolean [type=bool_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 0 test cases to validate for tool gatk2_variant_recalibrator / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_recalibrator.xml) | |
| Found 1 test cases to validate for tool gatk2_indel_realigner / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/indel_realigner.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| knowns_only | |
| Input should be a valid boolean [type=bool_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool gatk2_realigner_target_creator / 2.8.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/realigner_target_creator.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_haplotype_caller / 2.8.2 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/haplotype_caller.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| dbsnp_rod_bind_type.__absent__.dbsnp_input_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_variant_select / 2.8.2 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/variant_select.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_variant | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| exclude_filtered | |
| Input should be a valid boolean [type=bool_type, input_value=None, input_type=NoneType] | |
| For further information visit https://errors.pydantic.dev/2.8/v/bool_type | |
| Found 1 test cases to validate for tool gatk2_print_reads / 2.8.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/print_reads.xml) | |
| Test Case 1: validation failed - 1 validation error for DynamicModelForTool | |
| reference_source.__absent__.input_bam | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 1 test cases to validate for tool gatk2_unified_genotyper / 2.8.2 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tools/gatk2/unified_genotyper.xml) | |
| Test Case 1: validation failed - 2 validation errors for DynamicModelForTool | |
| reference_source.__absent__.input_bams | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| dbsnp_rod_bind_type.__absent__.dbsnp_input_rod | |
| Field required [type=missing, input_value={}, input_type=dict] | |
| For further information visit https://errors.pydantic.dev/2.8/v/missing | |
| Found 0 test cases to validate for tool data_manager_humann2_download / 0.11.1.0 (@ /Users/jxc755/workspace/tools-iuc/deprecated/data_managers/data_manager_humann2_database_downloader/data_manager/data_manager_humann2_download.xml) | |
| Found 0 test cases to validate for tool snpSift_dbnsfp_generic / 4.1.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tool_collections/snpsift/snpsift_dbnsfp_generic/snpSift_dbnsfp.xml) | |
| Found 1 test cases to validate for tool samtools_rmdup / 2.0.1 (@ /Users/jxc755/workspace/tools-iuc/deprecated/tool_collections/samtools/samtools_rmdup/samtools_rmdup.xml) | |
| Test Case 1: validation failed - Invalid parameter name found bam_paired_end_type_selector |
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