jstutters

if filereadable(expand('$VIMRUNTIME/defaults.vim'))
    unlet! g:skip_defaults_vim
    source $VIMRUNTIME/defaults.vim
endif

if v:lang =~ "utf8$" || v:lang =~ "UTF-8$"
   set fileencodings=ucs-bom,utf-8,latin1
endif
                                                                                                                                                               
set nocompatible        " Use Vim defaults (much better!)

jstutters

#!/usr/bin/env python3.7

"""Calculate brain parenchymal fraction from a GIFv2 segmentation.

Intracranial volume (ICV) is grey-matter + CSF + white-matter.
Brain parenchymal fraction is (grey-matter + white-matter) / ICV.
"""

import os
import subprocess

jstutters

 WM lesion segmentation                      #
#                                                #
# -------------------------------                #
# (c) Sergi Valverde 2019                        #
# Neuroimage Computing Group                     #
# -------------------------------                #
##################################################

DEBUG:  1
Using TensorFlow backend.

jstutters

import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.NodeList;
import org.xml.sax.InputSource;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import java.io.FileInputStream;

public class Main {

jstutters

from collections import defaultdict
import os.path
import nibabel
import numpy as np
from pirec.artefacts import NiiGzImage
from skimage.measure import label as sklabel


def make_lesional_masks(masks):
    """Separate lesions to individual masks with 4D connectivity."""

jstutters

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python

jstutters

PROJECT:= name

.PHONY: check test codestyle docstyle lint pip

check: test codestyle docstyle lint

test:
	py.test --cov=$(PROJECT) tests

codestyle:

jstutters

import codecs
import os.path
from setuptools import find_packages, setup

NAME = ''
with codecs.open(os.path.join(NAME, 'VERSION'), encoding='utf-8') as f:
    version = f.read().strip()
with codecs.open('README.rst', encoding='utf-8') as f:
    long_description = f.read()

jstutters

zfs list -t snapshot -H -o name | grep "201509[0-9].*" | xargs -n1 echo
# zfs list -t snapshot -H -o name | grep "201509[0-9].*" | xargs -n1 zfs destroy