init.ts

//define the initData that will be used when creating the instance, this describes all the commands that will be ran on the instance
const initData = ec2.CloudFormationInit.fromElements(
  // ec2.InitFile.fromUrl("c:\\cfn\\mysql.msi", "https://downloads.mysql.com/archives/get/p/25/file/mysql-installer-community-8.0.24.0.msi"),
  ec2.InitFile.fromAsset("c:\\cfn\\BootstrapScript.ps1", "./BootstrapScript.ps1"),
  ec2.InitFile.fromAsset("c:\\cfn\\CreateADGroups.ps1", "./CreateADGroups.ps1"),
  ec2.InitPackage.msi("https://s3.amazonaws.com/aws-cli/AWSCLI64.msi"),
  ec2.InitCommand.shellCommand('powershell.exe [System.Net.ServicePointManager]::SecurityProtocol = [System.Net.ServicePointManager]::SecurityProtocol -bor 3072; iex ((New-Object System.Net.WebClient).DownloadString(\'https://chocolatey.org/install.ps1\'))', { key: "1-InstallChoco", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) }),
  ec2.InitCommand.shellCommand("powershell.exe -Command Rename-Computer (Get-EC2Tag -Filter @{Name='resource-id'; Values=(Invoke-WebRequest http://169.254.169.254/latest/meta-data/instance-id -UseBasicParsing).Content}).Where({$_.Key -eq 'Name'}).Value", { key: "2-RenameComputer", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) }),
  ec2.InitCommand.shellCommand('powershell.exe -Command Restart-Service AmazonSSMAgent"', { key: "3-RestartSSMAgent", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) }),
  ec2.InitCommand.shellCommand('powershell.exe Add-EC2Volume -InstanceId (Invoke-WebRequest http://169.254.169.254/latest/meta-data/instance-id -UseBasicParsing).Content -VolumeId ' + dVolume.volumeId + ' -Device ' + targetDevice + ' -Region ' + process.env.CDK_DEFAULT_REGION, { key: "4-AttachVolume", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(60)) }),
  ec2.InitCommand.shellCommand('powershell.exe -File "c:\\cfn\\BootstrapScript.ps1"', { key: "5-install", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(10)) }),
  ec2.InitCommand.shellCommand('powershell.exe -Command Send-SSMCommand -InstanceId (Invoke-WebRequest http://169.254.169.254/latest/meta-data/instance-id -UseBasicParsing).Content -DocumentName ' + domainJoinDocument + ' -TimeoutSecond 600 -Region ' + process.env.CDK_DEFAULT_REGION, { key: "6-DomainJoinServer", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(60)) }),
  ec2.InitCommand.shellCommand('powershell.exe -Command Restart-Computer -force', { key: "6-Restart", waitAfterCompletion: ec2.InitCommandWaitDuration.forever() }),
  // // ec2.InitCommand.shellCommand('powershell.exe -File "c:\\cfn\\CreateADGroups.ps1"', { key: "7-CreateADGroups", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) }),
  ec2.InitCommand.shellCommand('powershell.exe -Command Set-NetFirewallProfile -Profile Domain,Public,Private -Enabled False', { key: "7-DisableFirewall", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(10)) }),
  ec2.InitCommand.shellCommand('powershell.exe -File C:\\ProgramData\\Amazon\\EC2-Windows\\Launch\\Scripts\\InitializeDisks.ps1', { key: "8-Initialize", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) }),
  // ec2.InitCommand.shellCommand('msiexec /q /log c:\\cfn\\log\\mysql-install.log /i "C:\\cfn\\mysql.msi"', { key: "91-installMysql", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(30)) }),
  ec2.InitCommand.shellCommand('powershell.exe choco install mysql -y', { key: "9-installMysql", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(30)) }),
  ec2.InitCommand.shellCommand('cfn-signal.exe -e %ERRORLEVEL% --resource appmysqlserver --stack ' + this.stackId + ' --region ' + this.region, { key: "91-Signal", waitAfterCompletion: ec2.InitCommandWaitDuration.of(cdk.Duration.seconds(5)) })
)

Hi again managed to get the logs: seems like send ssm-command is not getting the instance ID. Wondering if we need to introduce wait?

2021-10-14 02:13:48,030 [DEBUG] Creating Scheduled Task for cfn-init resume
2021-10-14 02:13:48,499 [DEBUG] Scheduled Task created
2021-10-14 02:13:48,499 [INFO] Running configSets: default
2021-10-14 02:13:48,499 [INFO] Running configSet default
2021-10-14 02:13:48,499 [INFO] Running config config
2021-10-14 02:13:48,499 [DEBUG] No packages specified
2021-10-14 02:13:48,499 [DEBUG] No groups specified
2021-10-14 02:13:48,499 [DEBUG] No users specified
2021-10-14 02:13:48,499 [DEBUG] No sources specified
2021-10-14 02:13:48,499 [DEBUG] No files specified
2021-10-14 02:13:48,515 [DEBUG] No services specified
2021-10-14 02:13:48,562 [DEBUG] Running command 1-DisableFirewall
2021-10-14 02:13:48,562 [DEBUG] No test for command 1-DisableFirewall
2021-10-14 02:13:50,954 [INFO] Command 1-DisableFirewall succeeded
2021-10-14 02:13:50,954 [DEBUG] Command 1-DisableFirewall output:
2021-10-14 02:13:50,954 [INFO] Waiting 10 seconds for reboot
2021-10-14 02:14:01,008 [DEBUG] Running command 2-DomainJoin
2021-10-14 02:14:01,008 [DEBUG] No test for command 2-DomainJoin
2021-10-14 02:14:44,720 [ERROR] Command 2-DomainJoin (powershell.exe -Command Send-SSMCommand -InstanceId (Invoke-WebRequest http://169.254.169.254/latest/meta-data/instance-id -UseBasicParsing).Content -DocumentName -TimeoutSecond 600 -Region us-east-2) failed
2021-10-14 02:14:44,720 [DEBUG] Command 2-DomainJoin output: Send-SSMCommand : The service returned an error with Error Code InvalidInstanceId and HTTP Body:

{"__type":"InvalidInstanceId"}

At line:1 char:1

• Send-SSMCommand -InstanceId (Invoke-WebRequest http://169.254.169.254 ...

• 
    + CategoryInfo          : InvalidOperation: (Amazon.PowerShe...SMCommandCmdlet:SendSSMCommandCmdlet) [Send-SSMComm 
  
   and], InvalidOperationException
  
    + FullyQualifiedErrorId : Amazon.SimpleSystemsManagement.Model.InvalidInstanceIdException,Amazon.PowerShell.Cmdlet 
  
   s.SSM.SendSSMCommandCmdlet
  
  
  
  
  

2021-10-14 02:14:44,720 [ERROR] Error encountered during build of config: Command 2-DomainJoin failed
Traceback (most recent call last):
File "cfnbootstrap\construction.pyc", line 575, in run_config
File "cfnbootstrap\construction.pyc", line 144, in run_commands
File "cfnbootstrap\command_tool.pyc", line 127, in apply
cfnbootstrap.construction_errors.ToolError: Command 2-DomainJoin failed
2021-10-14 02:14:44,736 [ERROR] -----------------------BUILD FAILED!------------------------
2021-10-14 02:14:44,736 [ERROR] Unhandled exception during build: Command 2-DomainJoin failed
Traceback (most recent call last):
File "cfn-init", line 176, in
File "cfnbootstrap\construction.pyc", line 135, in build
File "cfnbootstrap\construction.pyc", line 561, in build
File "cfnbootstrap\construction.pyc", line 575, in run_config
File "cfnbootstrap\construction.pyc", line 144, in run_commands
File "cfnbootstrap\command_tool.pyc", line 127, in apply
cfnbootstrap.construction_errors.ToolError: Command 2-DomainJoin failed

Sorry for late reply.
Have you tried to run
(Invoke-WebRequest http://169.254.169.254/latest/meta-data/instance-id -UseBasicParsing).Content
localy on the instance to se if its able to resolve the instance id?
If it does, maybe it has something todo with qoutes.

Hi Thanks for replying,
I have tried several different ways to make this script work.
Script does work internally within the instance but it doesnt work when it tries to execute by calling cfn-int function within my CDK project.
I also tried to run the same command using the AWS UI systems manager --> automation this also works.
This is very weird.