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2021-07-23 Another look at the ggpubr package https://docs.google.com/document/d/1Fai7GWsZtrIdLHBMqp_WthiJoKC45ZgYmkFJwRqRrnA/edit?usp=sharing
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Sample.ID | Number.of.Reads | Mean.Reads.per.Spot | Median.Genes.per.Spot | Median.UMI.Counts.per.Spot | Valid.Barcodes | Sequencing.Saturation | Q30.Bases.in.Barcode | Q30.Bases.in.RNA.Read | Q30.Bases.in.UMI | Reads.Mapped.to.Genome | Reads.Mapped.Confidently.to.Genome | Reads.Mapped.Confidently.to.Intergenic.Regions | Reads.Mapped.Confidently.to.Intronic.Regions | Reads.Mapped.Confidently.to.Exonic.Regions | Reads.Mapped.Confidently.to.Transcriptome | Reads.Mapped.Antisense.to.Gene | Total.Genes.Detected | study | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | V10A27004_A1_Br3874 | 250388898 | 50995.7022403259 | 1302 | 2348 | 96.1 | 91.9 | 96.2 | 93.9 | 95.8 | 95.1 | 79.8 | 8.7 | 2.3 | 68.7 | 66.4 | 1 | 22439 | VisiumIF | |
2 | V10A27004_D1_Br3880 | 173548606 | 37646.1184381779 | 1155 | 2058 | 95.6 | 89.5 | 96.4 | 93.8 | 95.8 | 95.2 | 74.3 | 5.8 | 2.7 | 65.8 | 62.9 | 1.5 | 22355 | VisiumIF | |
3 | V10A27106_A1_Br3874 | 316562059 | 75605.9371865297 | 1347 | 2176 | 96.7 | 93.6 | 96.3 | 94 | 95.7 | 95 | 78.1 | 10.3 | 4.4 | 63.3 | 61.6 | 0.6 | 22809 | VisiumIF | |
4 | V10A27106_B1_Br3854 | 204558515 | 76157.3026805659 | 1126.5 | 1938 | 96.6 | 94 | 96.4 | 94.5 | 95.8 | 96.9 | 80.1 | 8.5 | 3.3 | 68.3 | 66.6 | 0.6 | 21041 | VisiumIF | |
5 | V10A27106_C1_Br3873 | 220898563 | 74251.6178151261 | 1388 | 2431 | 96.5 | 92.2 | 96.4 | 94.2 | 95.8 | 96.2 | 80.3 | 8.1 | 5.3 | 66.9 | 65 | 0.8 | 21859 | VisiumIF | |
6 | V10A27106_D1_Br3880 | 326514734 | 71729.9503514939 | 1193 | 2022 | 96.7 | 94.7 | 96.5 | 94.6 | 95.9 | 97.3 | 77.1 | 6.5 | 2.5 | 68.1 | 66.2 | 0.8 | 22501 | VisiumIF | |
7 | V10T31036_A1_Br3874 | 266607892 | 62001.8353488372 | 726.5 | 1051 | 96.7 | 96.2 | 96.4 | 94.2 | 95.9 | 97.6 | 74.2 | 7.7 | 3.8 | 62.7 | 61.1 | 0.5 | 21233 | VisiumIF | |
8 | V10T31036_B1_Br3854 | 154780779 | 43921.9009648127 | 548 | 777 | 96.8 | 95.2 | 96.2 | 94.2 | 95.8 | 97.7 | 69.3 | 7.2 | 3.4 | 58.8 | 57.1 | 0.6 | 19836 | VisiumIF | |
9 | V10T31036_C1_Br3873 | 219940925 | 76421.4471855455 | 811.5 | 1273.5 | 96.9 | 95 | 96.1 | 94.4 | 95.7 | 97.6 | 74.3 | 9.6 | 6.7 | 58 | 56.3 | 0.6 | 20621 | VisiumIF | |
10 | V10T31036_D1_Br3880 | 1106766081 | 241125.507843137 | 963.5 | 1596.5 | 25.7 | 95.3 | 95.9 | 92.2 | 94 | 92.1 | 68.3 | 4.5 | 8.3 | 55.4 | 20.9 | 33.2 | 22131 | VisiumIF | |
11 | Br2743_ant | 177157767 | 43581.2 | 1063 | 1650 | 97.2 | 92.2 | 94.1 | 93.4 | 94.4 | 90 | 72.9 | 7.9 | 3 | 62 | 60.5 | 0.3 | 20983 | spatialDLPFC | |
12 | Br2743_mid | 197423236 | 46496.3 | 1495.5 | 2438.5 | 97.1 | 91.7 | 94.1 | 94.2 | 94.4 | 91.8 | 81.7 | 7.2 | 2.7 | 71.8 | 69.9 | 0.7 | 21820 | spatialDLPFC | |
13 | Br2743_post_5 | 179860259 | 46487.5 | 1443 | 2200 | 97 | 92.5 | 94.2 | 92.8 | 94.6 | 92.8 | 84.7 | 7.4 | 2.2 | 75.1 | 73.5 | 0.5 | 20930 | spatialDLPFC | |
14 | 3942_ant | 260599165 | 66632.4 | 2029 | 3453 | 96.8 | 89.4 | 93.6 | 91.2 | 93.9 | 75.4 | 68.8 | 7.1 | 2.2 | 59.5 | 57.8 | 0.3 | 22194 | spatialDLPFC | |
15 | 3942_mid | 180617936 | 45982.2 | 1528 | 2523 | 97.1 | 93 | 94.7 | 93.4 | 95.1 | 96.2 | 92.8 | 4.5 | 1.8 | 86.4 | 83.7 | 1.3 | 22140 | spatialDLPFC | |
16 | 3942_post | 303081890 | 68882.2 | 2388 | 4128 | 96.9 | 90.4 | 94 | 93.4 | 94.3 | 87.7 | 84.5 | 6.5 | 2.5 | 75.5 | 73.9 | 0.5 | 22708 | spatialDLPFC | |
17 | Br6423_ant | 257160696 | 65837.4 | 1331.5 | 2063.5 | 96.8 | 94.5 | 93.9 | 92.1 | 94.1 | 82.3 | 77.6 | 5.5 | 2.3 | 69.9 | 68.1 | 0.5 | 21156 | spatialDLPFC | |
18 | Br6423_mid | 106380870 | 26702 | 1467 | 2314 | 96.8 | 88.2 | 94.4 | 93.9 | 94.7 | 96.3 | 91.6 | 5.1 | 1.9 | 84.6 | 81.9 | 1.4 | 21514 | spatialDLPFC | |
19 | Br6423_post_7 | 177832304 | 46178.2 | 1488 | 2223 | 96.8 | 93.4 | 94.3 | 93.8 | 94.6 | 95.6 | 91.7 | 5.4 | 2.1 | 84.1 | 82 | 1 | 21313 | spatialDLPFC | |
20 | Br8492_ant | 311848464 | 65063.3 | 1267 | 1902 | 96.5 | 93.8 | 93.4 | 91 | 93.7 | 74.5 | 69.2 | 6 | 2.1 | 61.1 | 59.4 | 0.4 | 21048 | spatialDLPFC | |
21 | Br8492_mid | 105315677 | 23746.5 | 1056 | 1513 | 96.8 | 91.7 | 94.6 | 93.8 | 95 | 97.1 | 91.7 | 5.5 | 2 | 84.2 | 81.4 | 1.5 | 20811 | spatialDLPFC | |
22 | Br8492_post | 226227723 | 48988.2 | 1137 | 1616 | 96.8 | 95.2 | 94 | 93.3 | 94.4 | 93.8 | 88.2 | 5.6 | 1.7 | 80.9 | 78.4 | 1.3 | 20967 | spatialDLPFC | |
23 | 151507 | 325097795 | 76928 | 1384 | 2463 | 96.9 | 95.3 | 97.1 | 95.2 | 97.2 | 96.3 | 93.4 | 6.4 | 1.9 | 85 | 79.5 | 3.3 | 21151 | spatialLIBD | |
24 | 151508 | 264048425 | 60230 | 1159 | 2019 | 96.9 | 95.2 | 97 | 95.1 | 97 | 96.6 | 93.8 | 7.5 | 1.8 | 84.5 | 79.3 | 2.8 | 20737 | spatialLIBD | |
25 | 151509 | 281536357 | 58788 | 1407 | 2416 | 96.5 | 94 | 96.8 | 95 | 96.8 | 95.6 | 92.5 | 6.8 | 2 | 83.7 | 77.3 | 4.1 | 21279 | spatialLIBD | |
26 | 151510 | 271009717 | 58482 | 1344 | 2319 | 96.6 | 94.1 | 97 | 95.1 | 97 | 95.9 | 92.7 | 7.4 | 1.9 | 83.4 | 77.5 | 3.6 | 21089 | spatialLIBD | |
27 | 151669 | 335637329 | 91679 | 1737 | 3470 | 97.2 | 94 | 96.9 | 95.2 | 96.9 | 95.2 | 91.9 | 8.1 | 1.9 | 81.8 | 77.7 | 1.9 | 21235 | spatialLIBD | |
28 | 151670 | 229265721 | 65541 | 1607 | 3113 | 97.2 | 92.6 | 96.8 | 94.6 | 96.9 | 95.6 | 92.6 | 8 | 1.9 | 82.7 | 78.5 | 2 | 21019 | spatialLIBD | |
29 | 151671 | 488495408 | 118855 | 1853 | 3743 | 97.1 | 95.5 | 97.1 | 95.1 | 97.1 | 96.5 | 93.8 | 7.5 | 1.8 | 84.5 | 79.8 | 2.5 | 21631 | spatialLIBD | |
30 | 151672 | 280822592 | 69943 | 1740 | 3482 | 97.2 | 92.7 | 96.8 | 95.2 | 96.8 | 95.4 | 92.3 | 7.7 | 1.8 | 82.7 | 78.4 | 2 | 21343 | spatialLIBD | |
31 | 151673 | 300684902 | 82628 | 2113 | 4120 | 97 | 92.1 | 97 | 95.1 | 97.1 | 95.7 | 92.8 | 6.4 | 2.2 | 84.2 | 79.5 | 2.4 | 21842 | spatialLIBD | |
32 | 151674 | 822237691 | 223859 | 2610 | 5334 | 97.1 | 96.1 | 96.8 | 95.1 | 96.9 | 94.5 | 91.1 | 6.9 | 2.3 | 81.9 | 77.6 | 2.1 | 22437 | spatialLIBD | |
33 | 151675 | 233478770 | 64999 | 1695 | 3139 | 97 | 92.1 | 97 | 95.5 | 97 | 96 | 92.8 | 6.9 | 2.2 | 83.8 | 79.4 | 2.1 | 21344 | spatialLIBD | |
34 | 151676 | 320748023 | 92701 | 1813 | 3419 | 97.2 | 93.8 | 97 | 95.1 | 97 | 94.5 | 91 | 7.3 | 2.2 | 81.5 | 77.6 | 1.7 | 21312 | spatialLIBD |
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## Automatically style the code in this script: | |
styler::style_file(here("code.R"), | |
transformers = biocthis::bioc_style() | |
) | |
library("ggplot2") | |
library("here") | |
library("ggpubr") | |
library("sessioninfo") | |
## Read in the data | |
sample_metrics <- read.csv("sample_metrics.csv", row.names = "X") | |
all_metrics <- read.csv("all_metrics.csv", row.names = "X") | |
## Explore the data | |
View(sample_metrics) | |
View(all_metrics) | |
## Compare fiducial alignments: made by Abby or by 10x Genomics | |
## Used https://rpkgs.datanovia.com/ggpubr/reference/ggpaired.html | |
pdf( | |
here("alignment_check_abby_vs_10x.pdf"), | |
useDingbats = FALSE, | |
width = 10 | |
) | |
for (i in colnames(sample_metrics)[-c(1, ncol(sample_metrics))]) { | |
p <- | |
ggpaired( | |
sample_metrics, | |
id = "Sample.ID", | |
x = "Alignment", | |
y = i, | |
xlab = "Fiducial Alignment", | |
ylab = i, | |
fill = "Alignment", | |
palette = "Dark2", | |
line.color = "gray", | |
ggtheme = theme_pubr(base_size = 30) | |
) | |
print(p) | |
} | |
dev.off() | |
## Compare metrics one at a time across studies | |
## Used https://rpkgs.datanovia.com/ggpubr/reference/ggboxplot.html | |
pdf( | |
here( | |
"cross_study_spaceranger_metrics_boxplots.pdf" | |
), | |
useDingbats = FALSE, | |
width = 10 | |
) | |
for (i in colnames(all_metrics)[-c(1, ncol(all_metrics))]) { | |
set.seed(20210714) | |
p <- | |
ggboxplot( | |
all_metrics, | |
x = "study", | |
y = i, | |
color = "study", | |
palette = "Dark2", | |
add = "jitter", | |
shape = "study", | |
label = "Sample.ID", | |
repel = TRUE, | |
font.label = list(size = 5), | |
ggtheme = theme_pubr(base_size = 30), | |
legend = "none" | |
) | |
print(p) | |
} | |
dev.off() | |
print("Reproducibility information:") | |
Sys.time() | |
proc.time() | |
options(width = 120) | |
session_info() | |
# ─ Session info ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── | |
# setting value | |
# version R version 4.1.0 (2021-05-18) | |
# os macOS Big Sur 11.4 | |
# system x86_64, darwin17.0 | |
# ui RStudio | |
# language (EN) | |
# collate en_US.UTF-8 | |
# ctype en_US.UTF-8 | |
# tz America/New_York | |
# date 2021-07-23 | |
# | |
# ─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── | |
# package * version date lib source | |
# abind 1.4-5 2016-07-21 [1] CRAN (R 4.1.0) | |
# assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.1.0) | |
# backports 1.2.1 2020-12-09 [1] CRAN (R 4.1.0) | |
# biocthis 1.2.0 2021-05-19 [1] Bioconductor | |
# broom 0.7.8 2021-06-24 [1] CRAN (R 4.1.0) | |
# cachem 1.0.5 2021-05-15 [1] CRAN (R 4.1.0) | |
# callr 3.7.0 2021-04-20 [1] CRAN (R 4.1.0) | |
# car 3.0-11 2021-06-27 [1] CRAN (R 4.1.0) | |
# carData 3.0-4 2020-05-22 [1] CRAN (R 4.1.0) | |
# cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.1.0) | |
# cli 3.0.0 2021-06-30 [1] CRAN (R 4.1.0) | |
# colorout 1.2-2 2020-11-03 [1] Github (jalvesaq/colorout@726d681) | |
# colorspace 2.0-2 2021-06-24 [1] CRAN (R 4.1.0) | |
# crayon 1.4.1 2021-02-08 [1] CRAN (R 4.1.0) | |
# curl 4.3.2 2021-06-23 [1] CRAN (R 4.1.0) | |
# data.table 1.14.0 2021-02-21 [1] CRAN (R 4.1.0) | |
# DBI 1.1.1 2021-01-15 [1] CRAN (R 4.1.0) | |
# desc 1.3.0 2021-03-05 [1] CRAN (R 4.1.0) | |
# devtools * 2.4.2 2021-06-07 [1] CRAN (R 4.1.0) | |
# digest 0.6.27 2020-10-24 [1] CRAN (R 4.1.0) | |
# dplyr 1.0.7 2021-06-18 [1] CRAN (R 4.1.0) | |
# ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0) | |
# fansi 0.5.0 2021-05-25 [1] CRAN (R 4.1.0) | |
# farver 2.1.0 2021-02-28 [1] CRAN (R 4.1.0) | |
# fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0) | |
# forcats 0.5.1 2021-01-27 [1] CRAN (R 4.1.0) | |
# foreign 0.8-81 2020-12-22 [1] CRAN (R 4.1.0) | |
# fs 1.5.0 2020-07-31 [1] CRAN (R 4.1.0) | |
# generics 0.1.0 2020-10-31 [1] CRAN (R 4.1.0) | |
# ggplot2 * 3.3.5 2021-06-25 [1] CRAN (R 4.1.0) | |
# ggpubr * 0.4.0 2020-06-27 [1] CRAN (R 4.1.0) | |
# ggrepel 0.9.1 2021-01-15 [1] CRAN (R 4.1.0) | |
# ggsignif 0.6.2 2021-06-14 [1] CRAN (R 4.1.0) | |
# glue 1.4.2 2020-08-27 [1] CRAN (R 4.1.0) | |
# gtable 0.3.0 2019-03-25 [1] CRAN (R 4.1.0) | |
# haven 2.4.1 2021-04-23 [1] CRAN (R 4.1.0) | |
# here * 1.0.1 2020-12-13 [1] CRAN (R 4.1.0) | |
# hms 1.1.0 2021-05-17 [1] CRAN (R 4.1.0) | |
# labeling 0.4.2 2020-10-20 [1] CRAN (R 4.1.0) | |
# lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.1.0) | |
# lubridate 1.7.10 2021-02-26 [1] CRAN (R 4.1.0) | |
# magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.1.0) | |
# memoise 2.0.0 2021-01-26 [1] CRAN (R 4.1.0) | |
# munsell 0.5.0 2018-06-12 [1] CRAN (R 4.1.0) | |
# openxlsx 4.2.4 2021-06-16 [1] CRAN (R 4.1.0) | |
# pillar 1.6.1 2021-05-16 [1] CRAN (R 4.1.0) | |
# pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.1.0) | |
# pkgconfig 2.0.3 2021-03-31 [1] Github (gaborcsardi/pkgconfig@b81ae03) | |
# pkgload 1.2.1 2021-04-06 [1] CRAN (R 4.1.0) | |
# prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.1.0) | |
# processx 3.5.2 2021-04-30 [1] CRAN (R 4.1.0) | |
# prompt 1.0.1 2021-03-12 [1] CRAN (R 4.1.0) | |
# ps 1.6.0 2021-02-28 [1] CRAN (R 4.1.0) | |
# purrr 0.3.4 2020-04-17 [1] CRAN (R 4.1.0) | |
# R.cache 0.15.0 2021-04-30 [1] CRAN (R 4.1.0) | |
# R.methodsS3 1.8.1 2020-08-26 [1] CRAN (R 4.1.0) | |
# R.oo 1.24.0 2020-08-26 [1] CRAN (R 4.1.0) | |
# R.utils 2.10.1 2020-08-26 [1] CRAN (R 4.1.0) | |
# R6 2.5.0 2020-10-28 [1] CRAN (R 4.1.0) | |
# RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 4.1.0) | |
# Rcpp 1.0.7 2021-07-07 [1] CRAN (R 4.1.0) | |
# readxl 1.3.1 2019-03-13 [1] CRAN (R 4.1.0) | |
# rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.1.0) | |
# remotes 2.4.0 2021-06-02 [1] CRAN (R 4.1.0) | |
# rio 0.5.27 2021-06-21 [1] CRAN (R 4.1.0) | |
# rlang 0.4.11 2021-04-30 [1] CRAN (R 4.1.0) | |
# rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.1.0) | |
# rstatix 0.7.0 2021-02-13 [1] CRAN (R 4.1.0) | |
# rsthemes 0.2.1.9000 2021-02-12 [1] Github (gadenbuie/rsthemes@521572b) | |
# rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.0) | |
# scales 1.1.1 2020-05-11 [1] CRAN (R 4.1.0) | |
# sessioninfo * 1.1.1 2018-11-05 [1] CRAN (R 4.1.0) | |
# stringi 1.7.2 2021-07-14 [1] CRAN (R 4.1.0) | |
# styler 1.5.1 2021-07-13 [1] CRAN (R 4.1.0) | |
# suncalc 0.5.0 2019-04-03 [1] CRAN (R 4.1.0) | |
# testthat * 3.0.4 2021-07-01 [1] CRAN (R 4.1.0) | |
# tibble 3.1.2 2021-05-16 [1] CRAN (R 4.1.0) | |
# tidyr 1.1.3 2021-03-03 [1] CRAN (R 4.1.0) | |
# tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.1.0) | |
# usethis * 2.0.1 2021-02-10 [1] CRAN (R 4.1.0) | |
# utf8 1.2.1 2021-03-12 [1] CRAN (R 4.1.0) | |
# vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0) | |
# withr 2.4.2 2021-04-18 [1] CRAN (R 4.1.0) | |
# xfun 0.24 2021-06-15 [1] CRAN (R 4.1.0) | |
# zip 2.2.0 2021-05-31 [1] CRAN (R 4.1.0) | |
# | |
# [1] /Library/Frameworks/R.framework/Versions/4.1/Resources/library |
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Sample.ID | Number.of.Spots.Under.Tissue | Number.of.Reads | Mean.Reads.per.Spot | Mean.Reads.Under.Tissue.per.Spot | Fraction.of.Spots.Under.Tissue | Median.Genes.per.Spot | Median.UMI.Counts.per.Spot | Valid.Barcodes | Valid.UMIs | Sequencing.Saturation | Q30.Bases.in.Barcode | Q30.Bases.in.RNA.Read | Q30.Bases.in.UMI | Reads.Mapped.to.Genome | Reads.Mapped.Confidently.to.Genome | Reads.Mapped.Confidently.to.Intergenic.Regions | Reads.Mapped.Confidently.to.Intronic.Regions | Reads.Mapped.Confidently.to.Exonic.Regions | Reads.Mapped.Confidently.to.Transcriptome | Reads.Mapped.Antisense.to.Gene | Fraction.Reads.in.Spots.Under.Tissue | Total.Genes.Detected | Alignment | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | V10A27004_A1_Br3874 | 4910 | 250388898 | 50995.7022403259 | 48368.0395112016 | 0.983573717948718 | 1302 | 2348 | 0.960753475579416 | 0.998811249211217 | 0.919297807150796 | 0.962089365727419 | 0.938768591228323 | 0.957812669115112 | 0.951109162196161 | 0.797875714920875 | 0.0869168847893568 | 0.0234648223101329 | 0.687494007821385 | 0.664476309968024 | 0.00988360514290853 | 0.987707817702276 | 22439 | Abby | |
2 | V10A27004_D1_Br3880 | 4610 | 173548606 | 37646.1184381779 | 33428.1605206074 | 0.923477564102564 | 1155 | 2058 | 0.956125974299096 | 0.998918326085546 | 0.895470548687243 | 0.963555513840138 | 0.938134113689484 | 0.958428653387733 | 0.951900201376438 | 0.742550349266418 | 0.0581350852221769 | 0.026791531820198 | 0.657623732224043 | 0.629130285264291 | 0.0151808882867086 | 0.923391550491752 | 22355 | Abby | |
3 | V10A27106_A1_Br3874 | 4187 | 316562059 | 75605.9371865297 | 61610.1370909959 | 0.838741987179487 | 1347 | 2176 | 0.96669481164829 | 0.999521266065558 | 0.936379582038632 | 0.96257109122518 | 0.940073340641058 | 0.957197159134918 | 0.950176334934693 | 0.78093424960949 | 0.103378848063406 | 0.0444256492531848 | 0.633129752292899 | 0.615719001878238 | 0.00617696260308946 | 0.838750561890505 | 22809 | Abby | |
4 | V10A27106_B1_Br3854 | 2686 | 204558515 | 76157.3026805659 | 50232.3603871928 | 0.538060897435897 | 1126.5 | 1938 | 0.966425479770422 | 0.99973796739774 | 0.940113014045053 | 0.963863604453622 | 0.945031993414199 | 0.958235202842374 | 0.96898032330749 | 0.801152257093771 | 0.0846274231116705 | 0.0334816910457137 | 0.683043142936387 | 0.665605345248033 | 0.00621408989012264 | 0.659060228288747 | 21041 | Abby | |
5 | V10A27106_C1_Br3873 | 2975 | 220898563 | 74251.6178151261 | 49826.4621848739 | 0.595953525641026 | 1388 | 2431 | 0.965474927059621 | 0.99975659868824 | 0.921609613034569 | 0.964316637193592 | 0.942473389005411 | 0.958496141278726 | 0.96153722376184 | 0.803191535474135 | 0.0811225105162862 | 0.0529020643742259 | 0.669166960583623 | 0.650070552971411 | 0.0075946397170542 | 0.686174999536813 | 21859 | Abby | |
6 | V10A27106_D1_Br3880 | 4552 | 326514734 | 71729.9503514939 | 64919.7409929701 | 0.911858974358974 | 1193 | 2022 | 0.966562112324156 | 0.999828268086671 | 0.946908814395444 | 0.964586668665394 | 0.945513540445062 | 0.95919731467962 | 0.97251105366657 | 0.771391746750393 | 0.0648384185933857 | 0.0251950957900724 | 0.681358232366935 | 0.661679154117437 | 0.00794749740144958 | 0.920441182824334 | 22501 | Abby | |
7 | V10T31036_A1_Br3874 | 4300 | 266607892 | 62001.8353488372 | 51613.9530232558 | 0.861378205128205 | 726.5 | 1051 | 0.967163777732431 | 0.999927230211175 | 0.962343920513618 | 0.964131215728931 | 0.941640297113819 | 0.959241786744685 | 0.97598165998777 | 0.741608009113249 | 0.0771386129859952 | 0.0375707407791214 | 0.626898655348132 | 0.610840814869801 | 0.00507652264097268 | 0.843074325035066 | 21233 | Abby | |
8 | V10T31036_B1_Br3854 | 3524 | 154780779 | 43921.9009648127 | 31856.3339954597 | 0.705929487179487 | 548 | 777 | 0.968163217475472 | 0.9999366458803 | 0.951864160437285 | 0.961954348199563 | 0.942499695846234 | 0.957573455811753 | 0.977022308435339 | 0.693141388053099 | 0.0717306378203459 | 0.0337758734241801 | 0.587634876808573 | 0.571279648359956 | 0.00570547587178121 | 0.70223350474551 | 19836 | Abby | |
9 | V10T31036_C1_Br3873 | 2878 | 219940925 | 76421.4471855455 | 47834.0510771369 | 0.576522435897436 | 811.5 | 1273.5 | 0.968668295816252 | 0.999927930647741 | 0.949589102624817 | 0.961470117308488 | 0.944087284393363 | 0.956804546952204 | 0.975912354647049 | 0.742992710428948 | 0.0960911390183523 | 0.0666105819096651 | 0.580290989500931 | 0.562631124698598 | 0.0061444499244513 | 0.657313094405038 | 20621 | Abby | |
10 | V10T31036_D1_Br3880 | 4590 | 1106766081 | 241125.507843137 | 58019.5161220044 | 0.919471153846154 | 963.5 | 1596.5 | 0.256581152851575 | 0.998349319669835 | 0.953075389065038 | 0.959046453453379 | 0.921532465355731 | 0.939844842850214 | 0.920757844403076 | 0.682509622374305 | 0.0448797599173985 | 0.0832373692883347 | 0.554392493168572 | 0.208755921387873 | 0.331600148667729 | 0.926355881748322 | 22131 | Abby | |
11 | V10A27004_A1_Br3874 | 4863 | 250388898 | 51488.5663170882 | 48561.2095414353 | 0.974158653846154 | 1304 | 2355 | 0.960753475579416 | 0.998811249211217 | 0.919297807150796 | 0.962089365727419 | 0.938768591228323 | 0.957812669115112 | 0.951109162196161 | 0.797875714920875 | 0.0869168847893568 | 0.0234648223101329 | 0.687494007821385 | 0.664476309968024 | 0.00988360514290853 | 0.981314122765295 | 22428 | 10x | |
12 | V10A27004_D1_Br3880 | 4543 | 173548606 | 38201.3220338983 | 33282.9865727493 | 0.91005608974359 | 1152 | 2049 | 0.956125974299096 | 0.998918326085546 | 0.895470548687243 | 0.963555513840138 | 0.938134113689484 | 0.958428653387733 | 0.951900201376438 | 0.742550349266418 | 0.0581350852221769 | 0.026791531820198 | 0.657623732224043 | 0.629130285264291 | 0.0151808882867086 | 0.904613187641248 | 22297 | 10x | |
13 | V10A27106_A1_Br3874 | 4007 | 316562059 | 79002.2607936112 | 61378.3234339905 | 0.802684294871795 | 1345 | 2180 | 0.96669481164829 | 0.999521266065558 | 0.936379582038632 | 0.96257109122518 | 0.940073340641058 | 0.957197159134918 | 0.950176334934693 | 0.78093424960949 | 0.103378848063406 | 0.0444256492531848 | 0.633129752292899 | 0.615719001878238 | 0.00617696260308946 | 0.795267146397775 | 22695 | 10x | |
14 | V10A27106_B1_Br3854 | 2616 | 204558515 | 78195.1509938838 | 50114.5359327217 | 0.524038461538462 | 1123.5 | 1938.5 | 0.966425479770422 | 0.99973796739774 | 0.940113014045053 | 0.963863604453622 | 0.945031993414199 | 0.958235202842374 | 0.96898032330749 | 0.801152257093771 | 0.0846274231116705 | 0.0334816910457137 | 0.683043142936387 | 0.665605345248033 | 0.00621408989012264 | 0.638358116095852 | 20958 | 10x | |
15 | V10A27106_C1_Br3873 | 2788 | 220898563 | 79231.9092539455 | 49270.6495695839 | 0.55849358974359 | 1372 | 2398 | 0.965474927059621 | 0.99975659868824 | 0.921609613034569 | 0.964316637193592 | 0.942473389005411 | 0.958496141278726 | 0.96153722376184 | 0.803191535474135 | 0.0811225105162862 | 0.0529020643742259 | 0.669166960583623 | 0.650070552971411 | 0.0075946397170542 | 0.629852961424137 | 21595 | 10x | |
16 | V10A27106_D1_Br3880 | 4480 | 326514734 | 72882.753125 | 65038.3915178571 | 0.897435897435897 | 1188 | 2015 | 0.966562112324156 | 0.999828268086671 | 0.946908814395444 | 0.964586668665394 | 0.945513540445062 | 0.95919731467962 | 0.97251105366657 | 0.771391746750393 | 0.0648384185933857 | 0.0251950957900724 | 0.681358232366935 | 0.661679154117437 | 0.00794749740144958 | 0.905195525340793 | 22452 | 10x | |
17 | V10T31036_A1_Br3874 | 4171 | 266607892 | 63919.4178853992 | 51557.5581395349 | 0.835536858974359 | 728 | 1054 | 0.967163777732431 | 0.999927230211175 | 0.962343920513618 | 0.964131215728931 | 0.941640297113819 | 0.959241786744685 | 0.97598165998777 | 0.741608009113249 | 0.0771386129859952 | 0.0375707407791214 | 0.626898655348132 | 0.610840814869801 | 0.00507652264097268 | 0.818812905718964 | 21151 | 10x | |
18 | V10T31036_B1_Br3854 | 3429 | 154780779 | 45138.7515310586 | 31901.9422572178 | 0.686899038461538 | 548 | 776 | 0.968163217475472 | 0.9999366458803 | 0.951864160437285 | 0.961954348199563 | 0.942499695846234 | 0.957573455811753 | 0.977022308435339 | 0.693141388053099 | 0.0717306378203459 | 0.0337758734241801 | 0.587634876808573 | 0.571279648359956 | 0.00570547587178121 | 0.679436406943249 | 19784 | 10x | |
19 | V10T31036_C1_Br3873 | 2658 | 219940925 | 82746.773890143 | 48045.3370955606 | 0.532451923076923 | 823 | 1292 | 0.968668295816252 | 0.999927930647741 | 0.949589102624817 | 0.961470117308488 | 0.944087284393363 | 0.956804546952204 | 0.975912354647049 | 0.742992710428948 | 0.0960911390183523 | 0.0666105819096651 | 0.580290989500931 | 0.562631124698598 | 0.0061444499244513 | 0.620438318286251 | 20383 | 10x | |
20 | V10T31036_D1_Br3880 | 4596 | 1106766081 | 240810.722584856 | 57495.8348563969 | 0.920673076923077 | 957 | 1584 | 0.256581152851575 | 0.998349319669835 | 0.953075389065038 | 0.959046453453379 | 0.921532465355731 | 0.939844842850214 | 0.920757844403076 | 0.682509622374305 | 0.0448797599173985 | 0.0832373692883347 | 0.554392493168572 | 0.208755921387873 | 0.331600148667729 | 0.915613892761649 | 22106 | 10x |
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