Laurent Gatto lgatto

Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.

lgatto / gist:6f6facde55ab9e313753b4d92faa021a

Created November 23, 2018 10:34 — forked from ajstewartlang/gist:89dcdf01c4512a213141a16e9243626d

Hacked together code for animated raincloud plots for N=20 and N=500 where no difference exists in underlying populations

	#Usimg @micahgallen's nice raincloud plot code
	#and fork of benmarwick/geom_flat_violin.R code

	devtools::install_github('thomasp85/gganimate')

	library(tidyverse)
	library(gganimate)
	library(RColorBrewer)
	library(plyr)
	#the following is a fork of benmarwick/geom_flat_violin.R

lgatto / postmarkapp.r

Created June 4, 2013 17:20 — forked from hadley/postmarkapp.r

	library(base64enc)
	library(RJSONIO)
	library(httr)

	default_key <- function () {
	key <- Sys.getenv("POSTMARKAPP_API_KEY")
	if (key == "") {
	stop("Either provide key or set envvar POSTMARKAPP_API_KEY", call. = FALSE)
	}
	key

lgatto / deseq-vs-edger.R

Created September 19, 2012 09:38 — forked from stephenturner/deseq-vs-edger.R

DESeq vs edgeR comparison

	## http://gettinggeneticsdone.blogspot.co.uk/2012/09/deseq-vs-edger-comparison.html

	library(DESeq)
	library(edgeR)
	library(VennDiagram)

	# Read in data ------------------------------------------------------------

	## Use pasilla data
	datafile = system.file( "extdata/pasilla_gene_counts.tsv", package="pasilla" )