Created
January 22, 2024 18:56
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java stack with jtrace
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| minhtoo@minhtoo:~/.nextflow/capsule/deps$ jstack 63923 | |
| 2024-01-23 02:54:51 | |
| Full thread dump OpenJDK 64-Bit Server VM (17.0.6+10-LTS mixed mode, sharing): | |
| Threads class SMR info: | |
| _java_thread_list=0x00007f46f0001890, length=38, elements={ | |
| 0x00007f4748028010, 0x00007f4748167420, 0x00007f4748168800, 0x00007f4748177b10, | |
| 0x00007f4748178ec0, 0x00007f474817a2d0, 0x00007f474817bd00, 0x00007f474817d230, | |
| 0x00007f474817e6a0, 0x00007f47481b30f0, 0x00007f47481b5050, 0x00007f4748fc0990, | |
| 0x00007f474892a1c0, 0x00007f4748de2880, 0x00007f4749203220, 0x00007f47494b6d80, | |
| 0x00007f47494bd840, 0x00007f4749498f20, 0x00007f47494ed380, 0x00007f474950e4e0, | |
| 0x00007f474952a810, 0x00007f474952c990, 0x00007f474952ec20, 0x00007f474952fd60, | |
| 0x00007f4749538a00, 0x00007f47495397a0, 0x00007f474953b760, 0x00007f474953eea0, | |
| 0x00007f4749540890, 0x00007f4749551050, 0x00007f474955fe70, 0x00007f4749561ba0, | |
| 0x00007f4749560c20, 0x00007f47495263d0, 0x00007f46500179b0, 0x00007f46500110d0, | |
| 0x00007f46000020f0, 0x00007f46f0000eb0 | |
| } | |
| "main" #1 prio=5 os_prio=0 cpu=6865.98ms elapsed=916.97s tid=0x00007f4748028010 nid=0xfa05 waiting on condition [0x00007f474edfe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ff5d4b8> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block([email protected]/AbstractQueuedSynchronizer.java:506) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await([email protected]/AbstractQueuedSynchronizer.java:1623) | |
| at nextflow.util.Barrier$_awaitCompletion_closure3.doCall(Barrier.groovy:92) | |
| at nextflow.util.Barrier$_awaitCompletion_closure3.call(Barrier.groovy) | |
| at nextflow.extension.Bolts.withLock(Bolts.groovy:337) | |
| at nextflow.extension.Bolts.withLock(Bolts.groovy) | |
| at nextflow.util.Barrier.awaitCompletion(Barrier.groovy:89) | |
| at nextflow.Session.await(Session.groovy:659) | |
| at nextflow.script.ScriptRunner.await(ScriptRunner.groovy:255) | |
| at nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:143) | |
| at nextflow.cli.CmdRun.run(CmdRun.groovy:372) | |
| at nextflow.cli.Launcher.run(Launcher.groovy:500) | |
| at nextflow.cli.Launcher.main(Launcher.groovy:672) | |
| "Reference Handler" #2 daemon prio=10 os_prio=0 cpu=1.36ms elapsed=916.96s tid=0x00007f4748167420 nid=0xfa0c waiting on condition [0x00007f470f5f1000] | |
| java.lang.Thread.State: RUNNABLE | |
| at java.lang.ref.Reference.waitForReferencePendingList([email protected]/Native Method) | |
| at java.lang.ref.Reference.processPendingReferences([email protected]/Reference.java:253) | |
| at java.lang.ref.Reference$ReferenceHandler.run([email protected]/Reference.java:215) | |
| "Finalizer" #3 daemon prio=8 os_prio=0 cpu=0.79ms elapsed=916.96s tid=0x00007f4748168800 nid=0xfa0d in Object.wait() [0x00007f470ebfe000] | |
| java.lang.Thread.State: WAITING (on object monitor) | |
| at java.lang.Object.wait([email protected]/Native Method) | |
| - waiting on <0x000000060ea1b688> (a java.lang.ref.ReferenceQueue$Lock) | |
| at java.lang.ref.ReferenceQueue.remove([email protected]/ReferenceQueue.java:155) | |
| - locked <0x000000060ea1b688> (a java.lang.ref.ReferenceQueue$Lock) | |
| at java.lang.ref.ReferenceQueue.remove([email protected]/ReferenceQueue.java:176) | |
| at java.lang.ref.Finalizer$FinalizerThread.run([email protected]/Finalizer.java:172) | |
| "Signal Dispatcher" #4 daemon prio=9 os_prio=0 cpu=0.25ms elapsed=916.96s tid=0x00007f4748177b10 nid=0xfa0e waiting on condition [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "Service Thread" #5 daemon prio=9 os_prio=0 cpu=1.72ms elapsed=916.96s tid=0x00007f4748178ec0 nid=0xfa0f runnable [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "Monitor Deflation Thread" #6 daemon prio=9 os_prio=0 cpu=29.15ms elapsed=916.96s tid=0x00007f474817a2d0 nid=0xfa10 runnable [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "C2 CompilerThread0" #7 daemon prio=9 os_prio=0 cpu=5231.61ms elapsed=916.96s tid=0x00007f474817bd00 nid=0xfa11 waiting on condition [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| No compile task | |
| "C1 CompilerThread0" #15 daemon prio=9 os_prio=0 cpu=824.16ms elapsed=916.96s tid=0x00007f474817d230 nid=0xfa12 waiting on condition [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| No compile task | |
| "Sweeper thread" #19 daemon prio=9 os_prio=0 cpu=153.35ms elapsed=916.96s tid=0x00007f474817e6a0 nid=0xfa13 runnable [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "Common-Cleaner" #20 daemon prio=8 os_prio=0 cpu=2.63ms elapsed=916.95s tid=0x00007f47481b30f0 nid=0xfa15 in Object.wait() [0x00007f470de86000] | |
| java.lang.Thread.State: TIMED_WAITING (on object monitor) | |
| at java.lang.Object.wait([email protected]/Native Method) | |
| - waiting on <no object reference available> | |
| at java.lang.ref.ReferenceQueue.remove([email protected]/ReferenceQueue.java:155) | |
| - locked <0x000000060ea32320> (a java.lang.ref.ReferenceQueue$Lock) | |
| at jdk.internal.ref.CleanerImpl.run([email protected]/CleanerImpl.java:140) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| at jdk.internal.misc.InnocuousThread.run([email protected]/InnocuousThread.java:162) | |
| "Notification Thread" #21 daemon prio=9 os_prio=0 cpu=0.04ms elapsed=916.95s tid=0x00007f47481b5050 nid=0xfa16 runnable [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "process reaper" #27 daemon prio=10 os_prio=0 cpu=1.33ms elapsed=914.14s tid=0x00007f4748fc0990 nid=0xfa46 runnable [0x00007f474e856000] | |
| java.lang.Thread.State: RUNNABLE | |
| at java.lang.ProcessHandleImpl.waitForProcessExit0([email protected]/Native Method) | |
| at java.lang.ProcessHandleImpl$1.run([email protected]/ProcessHandleImpl.java:147) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1136) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "JGit-WorkQueue" #36 daemon prio=5 os_prio=0 cpu=0.56ms elapsed=889.99s tid=0x00007f474892a1c0 nid=0xfab0 waiting on condition [0x00007f470c2e8000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ec01e88> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block([email protected]/AbstractQueuedSynchronizer.java:506) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await([email protected]/AbstractQueuedSynchronizer.java:1623) | |
| at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take([email protected]/ScheduledThreadPoolExecutor.java:1170) | |
| at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take([email protected]/ScheduledThreadPoolExecutor.java:899) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Thread-5" #39 daemon prio=5 os_prio=0 cpu=234.59ms elapsed=886.77s tid=0x00007f4748de2880 nid=0xfad2 waiting on condition [0x00007f470df85000] | |
| java.lang.Thread.State: TIMED_WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060fd158a8> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject) | |
| at java.util.concurrent.locks.LockSupport.parkNanos([email protected]/LockSupport.java:252) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos([email protected]/AbstractQueuedSynchronizer.java:1672) | |
| at java.util.concurrent.LinkedBlockingDeque.pollFirst([email protected]/LinkedBlockingDeque.java:515) | |
| at java.util.concurrent.LinkedBlockingDeque.poll([email protected]/LinkedBlockingDeque.java:677) | |
| at nextflow.util.SimpleAgent.run(SimpleAgent.groovy:89) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0([email protected]/Native Method) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke([email protected]/NativeMethodAccessorImpl.java:77) | |
| at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke([email protected]/DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke([email protected]/Method.java:568) | |
| at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107) | |
| at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1254) | |
| at groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1042) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1128) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030) | |
| at groovy.lang.Closure.call(Closure.java:427) | |
| at groovy.lang.Closure.call(Closure.java:406) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "AnsiLogObserver" #40 daemon prio=5 os_prio=0 cpu=232.22ms elapsed=886.62s tid=0x00007f4749203220 nid=0xfad9 in Object.wait() [0x00007f468e2f7000] | |
| java.lang.Thread.State: TIMED_WAITING (on object monitor) | |
| at java.lang.Object.wait([email protected]/Native Method) | |
| - waiting on <no object reference available> | |
| at nextflow.trace.AnsiLogObserver.render0(AnsiLogObserver.groovy:179) | |
| - locked <0x000000060fd71ad0> (a nextflow.trace.AnsiLogObserver) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0([email protected]/Native Method) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke([email protected]/NativeMethodAccessorImpl.java:77) | |
| at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke([email protected]/DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke([email protected]/Method.java:568) | |
| at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107) | |
| at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1254) | |
| at groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1042) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1128) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030) | |
| at groovy.lang.Closure.call(Closure.java:427) | |
| at groovy.lang.Closure.call(Closure.java:406) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 1" #41 daemon prio=5 os_prio=0 cpu=3.62ms elapsed=883.94s tid=0x00007f47494b6d80 nid=0xfadc waiting on condition [0x00007f468ebfe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 2" #42 daemon prio=5 os_prio=0 cpu=0.21ms elapsed=883.92s tid=0x00007f47494bd840 nid=0xfadd waiting on condition [0x00007f468e4f8000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Task monitor" #43 daemon prio=5 os_prio=0 cpu=927.15ms elapsed=883.88s tid=0x00007f4749498f20 nid=0xfade waiting on condition [0x00007f468e3f7000] | |
| java.lang.Thread.State: TIMED_WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x00000006179d4d88> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject) | |
| at java.util.concurrent.locks.LockSupport.parkNanos([email protected]/LockSupport.java:252) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await([email protected]/AbstractQueuedSynchronizer.java:1757) | |
| at nextflow.processor.TaskPollingMonitor$_await_closure5.doCall(TaskPollingMonitor.groovy:493) | |
| at nextflow.processor.TaskPollingMonitor$_await_closure5.call(TaskPollingMonitor.groovy) | |
| at nextflow.extension.Bolts.withLock(Bolts.groovy:337) | |
| at nextflow.extension.Bolts.withLock(Bolts.groovy) | |
| at nextflow.processor.TaskPollingMonitor.await(TaskPollingMonitor.groovy:492) | |
| at nextflow.processor.TaskPollingMonitor.pollLoop(TaskPollingMonitor.groovy:422) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0([email protected]/Native Method) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke([email protected]/NativeMethodAccessorImpl.java:77) | |
| at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke([email protected]/DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke([email protected]/Method.java:568) | |
| at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107) | |
| at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1254) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030) | |
| at org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:1036) | |
| at org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:1019) | |
| at org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:97) | |
| at nextflow.processor.TaskPollingMonitor$_start_closure2.doCall(TaskPollingMonitor.groovy:293) | |
| at nextflow.processor.TaskPollingMonitor$_start_closure2.call(TaskPollingMonitor.groovy) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Task submitter" #44 daemon prio=5 os_prio=0 cpu=29.80ms elapsed=883.88s tid=0x00007f47494ed380 nid=0xfadf waiting on condition [0x00007f468c3fd000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x0000000617a32908> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block([email protected]/AbstractQueuedSynchronizer.java:506) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await([email protected]/AbstractQueuedSynchronizer.java:1623) | |
| at nextflow.processor.TaskPollingMonitor.awaitTasks(TaskPollingMonitor.groovy:363) | |
| at nextflow.processor.TaskPollingMonitor.submitLoop(TaskPollingMonitor.groovy:387) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0([email protected]/Native Method) | |
| at jdk.internal.reflect.NativeMethodAccessorImpl.invoke([email protected]/NativeMethodAccessorImpl.java:77) | |
| at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke([email protected]/DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke([email protected]/Method.java:568) | |
| at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107) | |
| at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1254) | |
| at groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1042) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1128) | |
| at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030) | |
| at groovy.lang.Closure.call(Closure.java:427) | |
| at groovy.lang.Closure.call(Closure.java:406) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 3" #45 daemon prio=5 os_prio=0 cpu=0.19ms elapsed=883.85s tid=0x00007f474950e4e0 nid=0xfae0 waiting on condition [0x00007f468c2fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 4" #46 daemon prio=5 os_prio=0 cpu=0.29ms elapsed=883.83s tid=0x00007f474952a810 nid=0xfae1 waiting on condition [0x00007f468c1fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 5" #47 daemon prio=5 os_prio=0 cpu=0.20ms elapsed=883.83s tid=0x00007f474952c990 nid=0xfae2 waiting on condition [0x00007f468c0fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 6" #48 daemon prio=5 os_prio=0 cpu=68.07ms elapsed=883.83s tid=0x00007f474952ec20 nid=0xfae3 waiting on condition [0x00007f46577fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 7" #49 daemon prio=5 os_prio=0 cpu=0.55ms elapsed=883.83s tid=0x00007f474952fd60 nid=0xfae4 waiting on condition [0x00007f46576fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 8" #50 daemon prio=5 os_prio=0 cpu=0.55ms elapsed=883.82s tid=0x00007f4749538a00 nid=0xfae5 waiting on condition [0x00007f46575fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 9" #51 daemon prio=5 os_prio=0 cpu=0.29ms elapsed=883.82s tid=0x00007f47495397a0 nid=0xfae6 waiting on condition [0x00007f46574fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 10" #52 daemon prio=5 os_prio=0 cpu=7.98ms elapsed=883.82s tid=0x00007f474953b760 nid=0xfae7 waiting on condition [0x00007f46573fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 11" #53 daemon prio=5 os_prio=0 cpu=0.43ms elapsed=883.80s tid=0x00007f474953eea0 nid=0xfae9 waiting on condition [0x00007f46572fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 12" #54 daemon prio=5 os_prio=0 cpu=49.12ms elapsed=883.80s tid=0x00007f4749540890 nid=0xfaea waiting on condition [0x00007f46571fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 13" #56 daemon prio=5 os_prio=0 cpu=6.07ms elapsed=883.79s tid=0x00007f4749551050 nid=0xfaf0 waiting on condition [0x00007f46570fe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 14" #57 daemon prio=5 os_prio=0 cpu=5.80ms elapsed=883.77s tid=0x00007f474955fe70 nid=0xfaf5 waiting on condition [0x00007f4656ffe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 15" #58 daemon prio=5 os_prio=0 cpu=0.99ms elapsed=883.77s tid=0x00007f4749561ba0 nid=0xfaf6 waiting on condition [0x00007f4656efe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 16" #59 daemon prio=5 os_prio=0 cpu=1.42ms elapsed=883.77s tid=0x00007f4749560c20 nid=0xfaf7 waiting on condition [0x00007f4656dfe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Actor Thread 17" #60 daemon prio=5 os_prio=0 cpu=1.27ms elapsed=883.75s tid=0x00007f47495263d0 nid=0xfafd waiting on condition [0x00007f4656cfe000] | |
| java.lang.Thread.State: WAITING (parking) | |
| at jdk.internal.misc.Unsafe.park([email protected]/Native Method) | |
| - parking to wait for <0x000000060ffaef38> (a java.util.concurrent.SynchronousQueue$TransferStack) | |
| at java.util.concurrent.locks.LockSupport.park([email protected]/LockSupport.java:341) | |
| at java.util.concurrent.SynchronousQueue$TransferStack$SNode.block([email protected]/SynchronousQueue.java:288) | |
| at java.util.concurrent.ForkJoinPool.unmanagedBlock([email protected]/ForkJoinPool.java:3463) | |
| at java.util.concurrent.ForkJoinPool.managedBlock([email protected]/ForkJoinPool.java:3434) | |
| at java.util.concurrent.SynchronousQueue$TransferStack.transfer([email protected]/SynchronousQueue.java:397) | |
| at java.util.concurrent.SynchronousQueue.take([email protected]/SynchronousQueue.java:886) | |
| at java.util.concurrent.ThreadPoolExecutor.getTask([email protected]/ThreadPoolExecutor.java:1062) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1122) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "pool-4-thread-1" #62 prio=5 os_prio=0 cpu=0.44ms elapsed=883.61s tid=0x00007f46500179b0 nid=0xfb00 in Object.wait() [0x00007f46569fe000] | |
| java.lang.Thread.State: WAITING (on object monitor) | |
| at java.lang.Object.wait([email protected]/Native Method) | |
| - waiting on <0x0000000620667cc0> (a java.lang.ProcessImpl) | |
| at java.lang.Object.wait([email protected]/Object.java:338) | |
| at java.lang.ProcessImpl.waitFor([email protected]/ProcessImpl.java:434) | |
| - locked <0x0000000620667cc0> (a java.lang.ProcessImpl) | |
| at nextflow.executor.local.LocalTaskHandler$_submit_closure1.doCall(LocalTaskHandler.groovy:109) | |
| at nextflow.executor.local.LocalTaskHandler$_submit_closure1.call(LocalTaskHandler.groovy) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.util.concurrent.Executors$RunnableAdapter.call([email protected]/Executors.java:539) | |
| at java.util.concurrent.FutureTask.run([email protected]/FutureTask.java:264) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1136) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "pool-4-thread-2" #63 prio=5 os_prio=0 cpu=0.54ms elapsed=883.60s tid=0x00007f46500110d0 nid=0xfb0a in Object.wait() [0x00007f46568fe000] | |
| java.lang.Thread.State: WAITING (on object monitor) | |
| at java.lang.Object.wait([email protected]/Native Method) | |
| - waiting on <0x0000000620000180> (a java.lang.ProcessImpl) | |
| at java.lang.Object.wait([email protected]/Object.java:338) | |
| at java.lang.ProcessImpl.waitFor([email protected]/ProcessImpl.java:434) | |
| - locked <0x0000000620000180> (a java.lang.ProcessImpl) | |
| at nextflow.executor.local.LocalTaskHandler$_submit_closure1.doCall(LocalTaskHandler.groovy:109) | |
| at nextflow.executor.local.LocalTaskHandler$_submit_closure1.call(LocalTaskHandler.groovy) | |
| at groovy.lang.Closure.run(Closure.java:498) | |
| at java.util.concurrent.Executors$RunnableAdapter.call([email protected]/Executors.java:539) | |
| at java.util.concurrent.FutureTask.run([email protected]/FutureTask.java:264) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1136) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "process reaper" #64 daemon prio=10 os_prio=0 cpu=0.10ms elapsed=883.60s tid=0x00007f46000020f0 nid=0xfb0e runnable [0x00007f474cc78000] | |
| java.lang.Thread.State: RUNNABLE | |
| at java.lang.ProcessHandleImpl.waitForProcessExit0([email protected]/Native Method) | |
| at java.lang.ProcessHandleImpl$1.run([email protected]/ProcessHandleImpl.java:147) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker([email protected]/ThreadPoolExecutor.java:1136) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run([email protected]/ThreadPoolExecutor.java:635) | |
| at java.lang.Thread.run([email protected]/Thread.java:833) | |
| "Attach Listener" #65 daemon prio=9 os_prio=0 cpu=0.26ms elapsed=0.10s tid=0x00007f46f0000eb0 nid=0x10056 waiting on condition [0x0000000000000000] | |
| java.lang.Thread.State: RUNNABLE | |
| "VM Thread" os_prio=0 cpu=51.47ms elapsed=916.97s tid=0x00007f4748163370 nid=0xfa0b runnable | |
| "GC Thread#0" os_prio=0 cpu=114.34ms elapsed=916.97s tid=0x00007f4748057430 nid=0xfa06 runnable | |
| "GC Thread#1" os_prio=0 cpu=45.11ms elapsed=916.74s tid=0x00007f4704006cd0 nid=0xfa1d runnable | |
| "GC Thread#2" os_prio=0 cpu=71.54ms elapsed=916.74s tid=0x00007f4704007700 nid=0xfa1e runnable | |
| "GC Thread#3" os_prio=0 cpu=95.83ms elapsed=916.74s tid=0x00007f4704008130 nid=0xfa1f runnable | |
| "GC Thread#4" os_prio=0 cpu=67.81ms elapsed=916.74s tid=0x00007f4704008b60 nid=0xfa20 runnable | |
| "GC Thread#5" os_prio=0 cpu=64.12ms elapsed=916.74s tid=0x00007f4704009590 nid=0xfa21 runnable | |
| "GC Thread#6" os_prio=0 cpu=47.90ms elapsed=916.74s tid=0x00007f4704009fc0 nid=0xfa22 runnable | |
| "GC Thread#7" os_prio=0 cpu=63.92ms elapsed=916.74s tid=0x00007f470400ade0 nid=0xfa23 runnable | |
| "GC Thread#8" os_prio=0 cpu=65.70ms elapsed=916.74s tid=0x00007f470400bc00 nid=0xfa24 runnable | |
| "GC Thread#9" os_prio=0 cpu=58.90ms elapsed=916.74s tid=0x00007f470400ca40 nid=0xfa25 runnable | |
| "GC Thread#10" os_prio=0 cpu=78.01ms elapsed=916.74s tid=0x00007f470400d8a0 nid=0xfa26 runnable | |
| "GC Thread#11" os_prio=0 cpu=71.09ms elapsed=916.74s tid=0x00007f470400e700 nid=0xfa27 runnable | |
| "GC Thread#12" os_prio=0 cpu=87.73ms elapsed=915.55s tid=0x00007f4704014060 nid=0xfa36 runnable | |
| "G1 Main Marker" os_prio=0 cpu=0.55ms elapsed=916.97s tid=0x00007f4748068310 nid=0xfa07 runnable | |
| "G1 Conc#0" os_prio=0 cpu=24.77ms elapsed=916.97s tid=0x00007f4748069270 nid=0xfa08 runnable | |
| "G1 Conc#1" os_prio=0 cpu=22.82ms elapsed=915.55s tid=0x00007f4710000eb0 nid=0xfa37 runnable | |
| "G1 Conc#2" os_prio=0 cpu=25.77ms elapsed=915.55s tid=0x00007f4710001640 nid=0xfa38 runnable | |
| "G1 Refine#0" os_prio=0 cpu=1.45ms elapsed=916.97s tid=0x00007f47481335d0 nid=0xfa09 runnable | |
| "G1 Service" os_prio=0 cpu=195.37ms elapsed=916.97s tid=0x00007f47481344c0 nid=0xfa0a runnable | |
| "VM Periodic Task Thread" os_prio=0 cpu=697.30ms elapsed=916.95s tid=0x00007f47481b6990 nid=0xfa17 waiting on condition | |
| JNI global refs: 26, weak refs: 0 |
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