NeuroML-DB stats

counter.sh

for model in paper_experiments/nml_standalones/*/
do
    echo -n "$(basename "${model}")"
    for fun in log exp sqrt sin cos tan sinh cosh tanh abs ceil factorial random
    do
        if rg \
            -q \
            -i \
            -g '*.nml' \
            '\b'"${fun}"'\b' \
            "${model}"
        then
            echo -n " ${fun}"
        fi
    done
    echo
done

gistfile1.txt

https://zenodo.org/record/5974932

stats.py

import glob
import collections
import re

c = collections.Counter()

for fn in glob.glob('./paper_experiments/sims/sims/*/Cell_type_0_code.gen.c'):
    with open(fn) as f:
        src = f.read()
    doit = src.split('doit', 1)[1]
    m = set(re.findall(r'([a-z_A-Z]+?)[0-9]*f?[0-9]* *\(', doit))
    if 'i' in m: m.remove('i')
    if 'for' in m: m.remove('for')
    c.update(m)
    c['files'] += 1

for k, v in c.items():
    print(k, v, round(v/c['files']*100, 2), '%')

# eden-processed neuroml database
# which amount of models use which function?
# function count   percentage
# exp      1055     97.78 %
# pow      1052     97.5  %
# log      1041     96.48 %
# sqrt        4      0.37 %
# total files: 1079