Last active
August 29, 2015 14:06
-
-
Save luzhuomi/6906f0786ae88628b2ad to your computer and use it in GitHub Desktop.
DTW optimization with lazy evaluation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
module Dtw where | |
import Data.Array | |
-- optmized using lazy evaluation, not using array | |
dtw :: Eq a => [a] -> [a] -> (a -> a -> Int) -> Maybe Int | |
dtw [] _ _ = Nothing | |
dtw _ [] _ = Nothing | |
dtw a b diff = | |
let | |
-- diagonal from the top-left element | |
mainDiag = oneDiag a b diff (head uppers) ( 0 : (head lowers)) | |
-- diagonals above the mainDiag | |
uppers = eachDiag a b (mainDiag : uppers) | |
-- diagonals below the mainDiag | |
lowers = eachDiag b a (mainDiag : lowers) -- ! | |
eachDiag a [] diags = [] | |
eachDiag a (b:bs) (lastDiag:diags) = | |
let nextDiag = head (tail diags) | |
in (oneDiag a bs diff nextDiag lastDiag):(eachDiag a bs diags) | |
-- which is the diagonal containing the bottom R.H. elt? | |
lab = (length a) - (length b) | |
in Just $ last ( if lab == 0 | |
then mainDiag | |
else if lab > 0 | |
then lowers !! ( lab-1) | |
else uppers !! (-lab-1) ) | |
min3 x y z = | |
-- see L. Allison, Lazy Dynamic-Programming can be Eager | |
-- Inf. Proc. Letters 43(4) pp207-212, Sept' 1992 | |
if x < y then x else min y z -- makes it O(|a|*D(a,b)) | |
-- min x (min y z) -- makes it O(|a|*|b|) | |
-- the fast one does not always evaluate all three values. | |
-- compute one diagonal | |
oneDiag :: Eq a => [a] -> [a] -> (a -> a -> Int) -> [Int] -> [Int] -> [Int] | |
oneDiag a b diff diagAbove diagBelow = -- \ \ \ | |
let -- \ \ \ | |
doDiag [] b nw n w = [] -- \ nw n | |
doDiag a [] nw n w = [] -- \ \ | |
doDiag (a:as) (b:bs) nw n w = -- w me | |
let me = (diff a b) + (min3 (head w) nw (head n)) | |
in me : (doDiag as bs me (tail n) (tail w)) | |
firstelt :: Int | |
firstelt = (diff (head a) (head b))+(head diagBelow) | |
thisdiag = | |
firstelt:(doDiag a b firstelt diagAbove (tail diagBelow)) | |
in thisdiag | |
as :: [Int] | |
as = [0,0,0,3,6,13,25,22,7,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0] | |
bs :: [Int] | |
bs = [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,5,12,24,23,8,3,1,0,0,0,0,0] | |
{- | |
$ ghci Dtw.hs | |
Ok, modules loaded: Dtw. | |
*Dtw> dtw as bs (\x y -> abs $ x - y) | |
21 | |
-} | |
-- standard version using arrays | |
-- strict version | |
dtwS :: Eq a => [a] -> [a] -> (a -> a -> Int) -> Maybe Int | |
dtwS [] _ diff = Nothing | |
dtwS _ [] diff = Nothing | |
dtwS xs ys diff = Just $ table ! (m,n) | |
where | |
(m,n) = (length xs, length ys) | |
x = array (1,m) (zip [1..] xs) | |
y = array (1,n) (zip [1..] ys) | |
table :: Array (Int,Int) Int | |
table = array bnds [(ij, dist ij) | ij <- range bnds] | |
bnds = ((0,0),(m,n)) | |
dist (0,j) = 0 | |
dist (i,0) = 0 | |
dist (i,j) = (diff (x!i) (y!j)) + (minimum [table ! (i-1,j), table ! (i,j-1) , table ! (i-1,j-1)]) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment