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January 27, 2015 23:24
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| [[DEBUG]] Going to use /tmp/tmp3P1tRE as temporary directory | |
| [[DEBUG]] Output from modulecmd python help: sh: modulecmd: command not found | |
| [[DEBUG]] Output from lmod python help: Usage: module [options] sub-command [args ...] | |
| Options: | |
| -h -? -H --help This help message | |
| -s availStyle --style=availStyle Site controlled avail style: system | |
| (default: system) | |
| -D Program tracing written to stderr | |
| --debug=dbglvl Program tracing written to stderr | |
| -d --default List default modules only when used with | |
| avail | |
| -q --quiet Do not print out warnings | |
| --topic=topic help topics: modfuncs envvars | |
| --expert Expert mode | |
| -t --terse Write out in machine readable format for | |
| commands: list, avail, spider, savelist | |
| --initial_load loading Lmod for first time in a user | |
| shell | |
| --latest Load latest (ignore default) | |
| --ignore_cache Treat the cache file(s) as out-of-date | |
| --novice Turn off expert and quiet flag | |
| --raw Print modulefile in raw output when used | |
| with show | |
| -w twidth --width=twidth Use this as max term width | |
| -v --version Print version info and quit | |
| -r --regexp use regular expression match | |
| --gitversion Dump git version in a machine readable | |
| way and quit | |
| --dumpversion Dump version in a machine readable way | |
| and quit | |
| --localvar=localvarA local variables needed to be set after | |
| this commands execution | |
| --check_syntax --checkSyntax Checking module command syntax: do not | |
| load | |
| --config Report Lmod Configuration | |
| --mt Report Module Table State | |
| --timer report run times | |
| --force force removal of a sticky module or save | |
| an empty collection | |
| --redirect Send the output of list, avail, spider | |
| to stdout (not stderr) | |
| --no_redirect Force output of list, avail and spider | |
| to stderr | |
| --show_hidden Avail and spider will report hidden | |
| modules | |
| --spider_timeout=timeout a timeout for spider | |
| module [options] sub-command [args ...] | |
| Help sub-commands: | |
| ------------------ | |
| help prints this message | |
| help module [...] print help message from module(s) | |
| Loading/Unloading sub-commands: | |
| ------------------------------- | |
| load | add module [...] load module(s) | |
| try-load | try-add module [...] Add module(s), do not complain if not | |
| found | |
| del | unload module [...] Remove module(s), do not complain if not | |
| found | |
| swap | sw | switch m1 m2 unload m1 and load m2 | |
| purge unload all modules | |
| refresh reload aliases from current list of | |
| modules. | |
| update reload all currently loaded modules. | |
| Listing / Searching sub-commands: | |
| --------------------------------- | |
| list List loaded modules | |
| list s1 s2 ... List loaded modules that match the | |
| pattern | |
| avail | av List available modules | |
| avail | av string List available modules that contain | |
| "string". | |
| spider List all possible modules | |
| spider module List all possible version of that module | |
| file | |
| spider string List all module that contain the | |
| "string". | |
| spider name/version Detailed information about that version | |
| of the module. | |
| whatis module Print whatis information about module | |
| keyword | key string Search all name and whatis that contain | |
| "string". | |
| Searching with Lmod: | |
| -------------------- | |
| All searching (spider, list, avail, keyword) support regular expressions: | |
| spider -r '^p' Finds all the modules that start with | |
| `p' or `P' | |
| spider -r mpi Finds all modules that have "mpi" in | |
| their name. | |
| spider -r 'mpi$ Finds all modules that end with "mpi" in | |
| their name. | |
| Handling a collection of modules: | |
| -------------------------------- | |
| save | s Save the current list of modules to a | |
| user defined "default". | |
| save | s name Save the current list of modules to | |
| "name" collection. | |
| restore | r Restore modules from the user's | |
| "default" or system default. | |
| restore | r name Restore modules from "name" collection. | |
| restore system Restore module state to system defaults. | |
| savelist List of saved collections. | |
| Deprecated commands: | |
| -------------------- | |
| reset The same as "restore system" | |
| getdefault [name] load name collection of modules or | |
| user's "default" if no name given. | |
| ===> Use "restore" instead <==== | |
| setdefault [name] Save current list of modules to name if | |
| given, otherwise save as the default | |
| list for you the user. | |
| ===> Use "save" instead. <==== | |
| Miscellaneous sub-commands: | |
| --------------------------- | |
| show modulefile show the commands in the module file. | |
| use [-a] path Prepend or Append path to MODULEPATH. | |
| unuse path remove path from MODULEPATH. | |
| tablelist output list of active modules as a lua | |
| table. | |
| Important Environment Variables: | |
| -------------------------------- | |
| LMOD_COLORIZE If defined to be "YES" then Lmod prints | |
| properties and warning in color. | |
| -------------------------------------------------------------------------- | |
| The following guides are at http://www.tacc.utexas.edu/tacc-projects/lmod | |
| User Guide - How to use. | |
| Advance User Guide - How to create you own modules. | |
| System Administrator Guide - How to install Lmod on your own system. | |
| -------------------------------------------------------------------------- | |
| Modules based on Lua: Version 5.8.5 (5.8.5-1-g201a61d) 2015-01-23 15:54 | |
| by Robert McLay [email protected] | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/modulefiDownloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.34.tar.gz | |
| Extracting in /tmp/tmptFI4WS | |
| Now working in /tmp/tmptFI4WS/distribute-0.6.34 | |
| Installing Distribute | |
| Before install bootstrap. | |
| Scanning installed packages | |
| Setuptools installation detected at /usr/lib/python2.7/site-packages | |
| Not patching, --root or --prefix is installing Distribute in another location | |
| running install | |
| running bdist_egg | |
| running egg_info | |
| writing distribute.egg-info/PKG-INFO | |
| writing top-level names to distribute.egg-info/top_level.txt | |
| writing dependency_links to distribute.egg-info/dependency_links.txt | |
| writing entry points to distribute.egg-info/entry_points.txt | |
| writing distribute.egg-info/PKG-INFO | |
| writing top-level names to distribute.egg-info/top_level.txt | |
| writing dependency_links to distribute.egg-info/dependency_links.txt | |
| writing entry points to distribute.egg-info/entry_points.txt | |
| reading manifest file 'distribute.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'distribute.egg-info/SOURCES.txt' | |
| installing library code to build/bdist.linux-x86_64/egg | |
| running install_lib | |
| running build_py | |
| creating build | |
| creating build/lib | |
| copying pkg_resources.py -> build/lib | |
| copying easy_install.py -> build/lib | |
| copying site.py -> build/lib | |
| creating build/lib/setuptools | |
| copying setuptools/archive_util.py -> build/lib/setuptools | |
| copying setuptools/depends.py -> build/lib/setuptools | |
| copying setuptools/dist.py -> build/lib/setuptools | |
| copying setuptools/extension.py -> build/lib/setuptools | |
| copying setuptools/package_index.py -> build/lib/setuptools | |
| copying setuptools/sandbox.py -> build/lib/setuptools | |
| copying setuptools/script template (dev).py -> build/lib/setuptools | |
| copying setuptools/script template.py -> build/lib/setuptools | |
| copying setuptools/__init__.py -> build/lib/setuptools | |
| creating build/lib/_markerlib | |
| copying _markerlib/markers.py -> build/lib/_markerlib | |
| copying _markerlib/__init__.py -> build/lib/_markerlib | |
| creating build/lib/setuptools/command | |
| copying setuptools/command/alias.py -> build/lib/setuptools/command | |
| copying setuptools/command/bdist_egg.py -> build/lib/setuptools/command | |
| copying setuptools/command/bdist_rpm.py -> build/lib/setuptools/command | |
| copying setuptools/command/bdist_wininst.py -> build/lib/setuptools/command | |
| copying setuptools/command/build_ext.py -> build/lib/setuptools/command | |
| copying setuptools/command/build_py.py -> build/lib/setuptools/command | |
| copying setuptools/command/develop.py -> build/lib/setuptools/command | |
| copying setuptools/command/easy_install.py -> build/lib/setuptools/command | |
| copying setuptools/command/egg_info.py -> build/lib/setuptools/command | |
| copying setuptools/command/install.py -> build/lib/setuptools/command | |
| copying setuptools/command/install_egg_info.py -> build/lib/setuptools/command | |
| copying setuptools/command/install_lib.py -> build/lib/setuptools/command | |
| copying setuptools/command/install_scripts.py -> build/lib/setuptools/command | |
| copying setuptools/command/register.py -> build/lib/setuptools/command | |
| copying setuptools/command/rotate.py -> build/lib/setuptools/command | |
| copying setuptools/command/saveopts.py -> build/lib/setuptools/command | |
| copying setuptools/command/sdist.py -> build/lib/setuptools/command | |
| copying setuptools/command/setopt.py -> build/lib/setuptools/command | |
| copying setuptools/command/test.py -> build/lib/setuptools/command | |
| copying setuptools/command/upload.py -> build/lib/setuptools/command | |
| copying setuptools/command/upload_docs.py -> build/lib/setuptools/command | |
| copying setuptools/command/__init__.py -> build/lib/setuptools/command | |
| creating build/lib/setuptools/tests | |
| copying setuptools/tests/doctest.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/py26compat.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/server.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_bdist_egg.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_build_ext.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_develop.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_dist_info.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_easy_install.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_markerlib.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_packageindex.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_resources.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_sandbox.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_sdist.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_test.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/test_upload_docs.py -> build/lib/setuptools/tests | |
| copying setuptools/tests/__init__.py -> build/lib/setuptools/tests | |
| copying setuptools/cli-32.exe -> build/lib/setuptools | |
| copying setuptools/cli-64.exe -> build/lib/setuptools | |
| copying setuptools/cli.exe -> build/lib/setuptools | |
| copying setuptools/gui-32.exe -> build/lib/setuptools | |
| copying setuptools/gui-64.exe -> build/lib/setuptools | |
| copying setuptools/gui.exe -> build/lib/setuptools | |
| creating build/bdist.linux-x86_64 | |
| creating build/bdist.linux-x86_64/egg | |
| copying build/lib/pkg_resources.py -> build/bdist.linux-x86_64/egg | |
| copying build/lib/easy_install.py -> build/bdist.linux-x86_64/egg | |
| copying build/lib/site.py -> build/bdist.linux-x86_64/egg | |
| creating build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/archive_util.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/depends.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/dist.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/extension.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/package_index.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/sandbox.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/script template (dev).py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/script template.py -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/__init__.py -> build/bdist.linux-x86_64/egg/setuptools | |
| creating build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/alias.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/bdist_rpm.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/bdist_wininst.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/build_py.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/develop.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/install.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/install_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/install_lib.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/install_scripts.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/register.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/rotate.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/saveopts.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/sdist.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/setopt.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/test.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/upload.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| copying build/lib/setuptools/command/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/command | |
| creating build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/doctest.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/server.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_develop.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_dist_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_markerlib.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_packageindex.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_resources.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_sandbox.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_sdist.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_test.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/test_upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/tests/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/tests | |
| copying build/lib/setuptools/cli-32.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/cli-64.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/cli.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/gui-32.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/gui-64.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| copying build/lib/setuptools/gui.exe -> build/bdist.linux-x86_64/egg/setuptools | |
| creating build/bdist.linux-x86_64/egg/_markerlib | |
| copying build/lib/_markerlib/markers.py -> build/bdist.linux-x86_64/egg/_markerlib | |
| copying build/lib/_markerlib/__init__.py -> build/bdist.linux-x86_64/egg/_markerlib | |
| byte-compiling build/bdist.linux-x86_64/egg/pkg_resources.py to pkg_resources.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/easy_install.py to easy_install.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/site.py to site.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/archive_util.py to archive_util.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/depends.py to depends.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/dist.py to dist.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/extension.py to extension.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/package_index.py to package_index.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/sandbox.py to sandbox.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template (dev).py to script template (dev).pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template.py to script template.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/__init__.py to __init__.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/alias.py to alias.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_egg.py to bdist_egg.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_rpm.py to bdist_rpm.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_wininst.py to bdist_wininst.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py to build_ext.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_py.py to build_py.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/develop.py to develop.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py to easy_install.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/egg_info.py to egg_info.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install.py to install.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_egg_info.py to install_egg_info.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_lib.py to install_lib.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_scripts.py to install_scripts.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/register.py to register.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/rotate.py to rotate.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/saveopts.py to saveopts.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/sdist.py to sdist.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/setopt.py to setopt.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/test.py to test.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload.py to upload.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload_docs.py to upload_docs.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/__init__.py to __init__.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/doctest.py to doctest.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/py26compat.py to py26compat.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/server.py to server.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_bdist_egg.py to test_bdist_egg.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_build_ext.py to test_build_ext.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_develop.py to test_develop.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_dist_info.py to test_dist_info.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_easy_install.py to test_easy_install.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_markerlib.py to test_markerlib.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_packageindex.py to test_packageindex.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_resources.py to test_resources.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sandbox.py to test_sandbox.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sdist.py to test_sdist.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_test.py to test_test.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_upload_docs.py to test_upload_docs.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/__init__.py to __init__.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/_markerlib/markers.py to markers.pyc | |
| byte-compiling build/bdist.linux-x86_64/egg/_markerlib/__init__.py to __init__.pyc | |
| creating build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| copying distribute.egg-info/zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO | |
| creating dist | |
| creating 'dist/distribute-0.6.34-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it | |
| removing 'build/bdist.linux-x86_64/egg' (and everything under it) | |
| Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/site.py | |
| Processing distribute-0.6.34-py2.7.egg | |
| creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg | |
| Extracting distribute-0.6.34-py2.7.egg to /tmp/tmp3P1tRE/lib/python2.7/site-packages | |
| Adding distribute 0.6.34 to easy-install.pth file | |
| Installing easy_install script to /tmp/tmp3P1tRE/bin | |
| Installing easy_install-2.7 script to /tmp/tmp3P1tRE/bin | |
| Installed /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg | |
| Processing dependencies for distribute==0.6.34 | |
| Finished processing dependencies for distribute==0.6.34 | |
| After install bootstrap. | |
| Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg-info | |
| Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/setuptools.pth | |
| les/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "ZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09Imxtb2QiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9MaW51eCIsIi9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9Db3JlIiwiL24vbG9jYWwvc2NiYy9pbnN0L2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsWyJ2ZXJzaW9uIl09Mix9"; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| [[INFO]] Found module command 'lmod' (Lmod), so using it. | |
| [[DEBUG]] sys.path after cleaning: ['/n/local/scbc/build/easyBuild', '/home/mec/local/lib/python', '/n/local/scbc/build/easyBuild', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/gtk-2.0', '/usr/lib/python2.7/site-packages'] | |
| [[INFO]] | |
| +++ STAGE 0: installing distribute via included (patched) distribute_setup.py... | |
| [[DEBUG]] preparing environment... | |
| [[DEBUG]] Preparing for path /tmp/tmp3P1tRE | |
| [[DEBUG]] os.environ['PYTHONPATH'] after reset: | |
| [[DEBUG]] $EASYBUILD_MODULES_TOOL set to Lmod | |
| [[DEBUG]] distribute_setup.__file__: /tmp/tmp3P1tRE/distribute_setup.py | |
| [[DEBUG]] easy_install sanity check OK | |
| [[DEBUG]] Found egg dir for distribute at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg | |
| [[DEBUG]] Found setuptools in expected path, good! | |
| [[INFO]] | |
| +++ STAGE 1: installing EasyBuild in temporary dir with easy_install... | |
| [[DEBUG]] Preparing for path /tmp/tmp3P1tRE/eb_stage1 | |
| [[DEBUG]] os.environ['PYTHONPATH'] after reset: | |
| [[DEBUG]] $EASYBUILD_MODULES_TOOL set to Lmod | |
| [[DEBUG]] installing EasyBuild with 'easy_install --upgrade --prefix=/tmp/tmp3P1tRE/eb_stage1 easybuild' | |
| Creating /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/site.py | |
| Searching for easybuild | |
| Reading http://pypi.python.org/simple/easybuild/ | |
| Best match: easybuild 1.16.1 | |
| Downloading https://pypi.python.org/packages/source/e/easybuild/easybuild-1.16.1.tar.gz#md5=e7d6bc3db7824c55c4062136dbddb4dc | |
| Processing easybuild-1.16.1.tar.gz | |
| Writing /tmp/easy_install-XtZJm4/easybuild-1.16.1/setup.cfg | |
| Running easybuild-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-XtZJm4/easybuild-1.16.1/egg-dist-tmp-eMXmdr | |
| Installing with setuptools.setup... | |
| Installing version 1.16.1 | |
| warning: install_lib: 'build/lib' does not exist -- no Python modules to install | |
| zip_safe flag not set; analyzing archive contents... | |
| Adding easybuild 1.16.1 to easy-install.pth file | |
| Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild-1.16.1-py2.7.egg | |
| Processing dependencies for easybuild | |
| Searching for easybuild-framework==1.16.1 | |
| Reading http://pypi.python.org/simple/easybuild-framework/ | |
| Best match: easybuild-framework 1.16.1 | |
| Downloading https://pypi.python.org/packages/source/e/easybuild-framework/easybuild-framework-1.16.1.tar.gz#md5=65fc39572af03c3fb75d7dd45cb6c272 | |
| Processing easybuild-framework-1.16.1.tar.gz | |
| Writing /tmp/easy_install-JjHysS/easybuild-framework-1.16.1/setup.cfg | |
| Running easybuild-framework-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-JjHysS/easybuild-framework-1.16.1/egg-dist-tmp-ZfGIVH | |
| Installing with setuptools.setup... | |
| Installing version 1.16.1 (API version 1) | |
| Adding easybuild-framework 1.16.1 to easy-install.pth file | |
| Installing eb script to /tmp/tmp3P1tRE/eb_stage1/bin | |
| Installing optcomplete.bash script to /tmp/tmp3P1tRE/eb_stage1/bin | |
| Installing minimal_bash_completion.bash script to /tmp/tmp3P1tRE/eb_stage1/bin | |
| Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg | |
| Searching for easybuild-easyblocks==1.16.1 | |
| Reading http://pypi.python.org/simple/easybuild-easyblocks/ | |
| Best match: easybuild-easyblocks 1.16.1 | |
| Downloading https://pypi.python.org/packages/source/e/easybuild-easyblocks/easybuild-easyblocks-1.16.1.tar.gz#md5=55e9ae2d6e8a83a20d69b5b30cb717f4 | |
| Processing easybuild-easyblocks-1.16.1.tar.gz | |
| Writing /tmp/easy_install-MzheDy/easybuild-easyblocks-1.16.1/setup.cfg | |
| Running easybuild-easyblocks-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-MzheDy/easybuild-easyblocks-1.16.1/egg-dist-tmp-vNoiLz | |
| Installing with setuptools.setup... | |
| Installing version 1.16.1 (required versions: API >= 1) | |
| Adding easybuild-easyblocks 1.16.1 to easy-install.pth file | |
| Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg | |
| Searching for easybuild-easyconfigs==1.16.1.0 | |
| Reading http://pypi.python.org/simple/easybuild-easyconfigs/ | |
| Best match: easybuild-easyconfigs 1.16.1.0 | |
| Downloading https://pypi.python.org/packages/source/e/easybuild-easyconfigs/easybuild-easyconfigs-1.16.1.0.tar.gz#md5=9c8873a90e8c3cedf05bf1e6d82532e3 | |
| Processing easybuild-easyconfigs-1.16.1.0.tar.gz | |
| Writing /tmp/easy_install-1nKjlC/easybuild-easyconfigs-1.16.1.0/setup.cfg | |
| Running easybuild-easyconfigs-1.16.1.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-1nKjlC/easybuild-easyconfigs-1.16.1.0/egg-dist-tmp-mXt0_G | |
| Installing with setuptools.setup... | |
| Installing version 1.16.1.0 (required versions: API >= 1, easyblocks >= 1.16) | |
| warning: install_lib: 'build/lib' does not exist -- no Python modules to install | |
| Adding easybuild-easyconfigs 1.16.1.0 to easy-install.pth file | |
| Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg | |
| Finished processing dependencies for easybuild | |
| [[DEBUG]] Found egg dir for easybuild-easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg | |
| [[DEBUG]] Found version for easybuild-easyconfigs: 1.16.1.0 | |
| [[DEBUG]] Found egg dir for easybuild-easyblocks at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg | |
| [[DEBUG]] Found version for easybuild-easyblocks: 1.16.1 | |
| [[DEBUG]] Found egg dir for easybuild-framework at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg | |
| [[DEBUG]] Found version for easybuild-framework: 1.16.1 | |
| [[DEBUG]] Determining EasyBuild version using command 'python -c 'from easybuild.tools.version import this_is_easybuild; print this_is_easybuild()' > /tmp/tmp3P1tRE/eb_version.out 2>&1' | |
| [[DEBUG]] installing EasyBuild v1.16.1 | |
| [[DEBUG]] Found easybuild-framework in expected path, good! | |
| [[DEBUG]] Found easybuild-easyblocks in expected path, good! | |
| [[INFO]] | |
| +++ STAGE 2: installing EasyBuild in /n/local/scbc/inst/easyBuild with EasyBuild from stage 1... | |
| [[DEBUG]] Found egg dir for distribute at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg | |
| [[DEBUG]] Created path /n/local/scbc/inst/easyBuild/modules/all | |
| [[DEBUG]] Running EasyBuild with arguments 'eb /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb --allow-modules-tool-mismatch --debug --logtostdout --prefix=/tmp/tmp3P1tRE --buildpath=/tmp/tmp3P1tRE --installpath=/n/local/scbc/inst/easyBuild' | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no ignore | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value True. store action found | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py default found. Not adding to args. | |
| == 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/home/mec/.easybuild/config.cfg'] default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /n/local/scbc/inst/easyBuild | |
| == 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found. Not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value True. store action found | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found. Not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found. Not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value Lmod | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tmp/tmp3P1tRE/sources | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found. Not adding to args. | |
| == 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found. Not adding to args. | |
| == 2015-01-27 17:10:53,533 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp default found. Not adding to args. | |
| == 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value ['goalf', '1.1.0-no-OFED'] | |
| == 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,543 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None default found. Not adding to args. | |
| == 2015-01-27 17:10:53,543 bootstrap_eb.EasyBuildOptions DEBUG commandline args ['--allow-modules-tool-mismatch', '--buildpath=/tmp/tmp3P1tRE', '--debug', '--installpath=/n/local/scbc/inst/easyBuild', '--logtostdout', '--modules-tool=Lmod', '--prefix=/tmp/tmp3P1tRE', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--sourcepath=/tmp/tmp3P1tRE/sources', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"'] | |
| == 2015-01-27 17:10:53,543 bootstrap_eb INFO This is EasyBuild 1.16.1 (framework: 1.16.1, easyblocks: 1.16.1) on host catalpa.sgc.loc. | |
| == 2015-01-27 17:10:53,544 bootstrap_eb INFO Command line: --allow-modules-tool-mismatch --buildpath=/tmp/tmp3P1tRE --debug --installpath=/n/local/scbc/inst/easyBuild --logtostdout --modules-tool=Lmod --prefix=/tmp/tmp3P1tRE --repositorypath=/tmp/tmp3P1tRE/ebfiles_repo --sourcepath=/tmp/tmp3P1tRE/sources --toolchain="['goalf', '1.1.0-no-OFED']" /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb | |
| == 2015-01-27 17:10:53,545 bootstrap_eb INFO Using /tmp/easybuild-ANu7Lt as temporary directory | |
| == 2015-01-27 17:10:53,545 bootstrap_eb.tools.robot INFO Using robot path(s): ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] | |
| == 2015-01-27 17:10:53,545 bootstrap_eb DEBUG Full robot path: ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] | |
| == 2015-01-27 17:10:53,546 bootstrap_eb.config DEBUG variables before oldstyle_init {} | |
| == 2015-01-27 17:10:53,546 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.filerepo | |
| == 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.gitrepo | |
| == 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.repository | |
| == 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.svnrepo | |
| == 2015-01-27 17:10:53,549 bootstrap_eb.config DEBUG variables after oldstyle_init read_configuration (/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py) {'build_path': '/home/mec/.local/easybuild/build', 'GitRepository': <class 'easybuild.tools.repository.gitrepo.GitRepository'>, 'module_classes': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'repository': <easybuild.tools.repository.filerepo.FileRepository object at 0x281ce10>, 'source_path': '/home/mec/.local/easybuild/sources', 'install_path': '/home/mec/.local/easybuild', 'repository_path': '/home/mec/.local/easybuild/ebfiles_repo', 'log_dir': '/tmp/easybuild-ANu7Lt', 'log_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'FileRepository': <class 'easybuild.tools.repository.filerepo.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (Uni.Lu, NTUA)\n', 'SvnRepository': <class 'easybuild.tools.repository.svnrepo.SvnRepository'>} | |
| == 2015-01-27 17:10:53,549 bootstrap_eb.config DEBUG Old style env var EASYBUILDBUILDPATH not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDTESTOUTPUT not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDCONFIG not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDSOURCEPATH not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDINSTALLPATH not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDLOGDIR not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDLOGFORMAT not defined. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG variables after oldstyle_init read_environment {'build_path': '/home/mec/.local/easybuild/build', 'GitRepository': <class 'easybuild.tools.repository.gitrepo.GitRepository'>, 'module_classes': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'repository': <easybuild.tools.repository.filerepo.FileRepository object at 0x281ce10>, 'source_path': '/home/mec/.local/easybuild/sources', 'install_path': '/home/mec/.local/easybuild', 'repository_path': '/home/mec/.local/easybuild/ebfiles_repo', 'log_dir': '/tmp/easybuild-ANu7Lt', 'log_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'FileRepository': <class 'easybuild.tools.repository.filerepo.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (Uni.Lu, NTUA)\n', 'SvnRepository': <class 'easybuild.tools.repository.svnrepo.SvnRepository'>} | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Oldstyle support: no action for dest moduleclasses. | |
| == 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Oldstyle support: no action for dest logfile_format. | |
| == 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Oldstyle support: no action for dest tmp_logdir. | |
| == 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Updating config variables with generaloption dict {'show_default_moduleclasses': False, 'module_naming_scheme': 'EasyBuildMNS', 'avail_module_naming_schemes': False, 'prefix': '/tmp/tmp3P1tRE', 'tmpdir': None, 'modules_tool': 'Lmod', 'repository': 'FileRepository', 'installpath': '/n/local/scbc/inst/easyBuild', 'testoutput': None, 'subdir_software': 'software', 'config': '/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', 'ignore_dirs': ['.git', '.svn'], 'buildpath': '/tmp/tmp3P1tRE', 'suffix_modules_path': 'all', 'repositorypath': ['/tmp/tmp3P1tRE/ebfiles_repo'], 'subdir_modules': 'modules', 'avail_modules_tools': False, 'modules_footer': None, 'recursive_module_unload': False, 'sourcepath': '/tmp/tmp3P1tRE/sources', 'avail_repositories': False} | |
| == 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Converted source path ('/tmp/tmp3P1tRE/sources') to a list of paths: ['/tmp/tmp3P1tRE/sources'] | |
| == 2015-01-27 17:10:53,551 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'show_default_moduleclasses' (value 'False') | |
| == 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_module_naming_schemes' (value 'False') | |
| == 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'modules_footer' (value 'None') | |
| == 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'FileRepository' (value '<class 'easybuild.tools.repository.filerepo.FileRepository'>') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'tmpdir' (value 'None') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'GitRepository' (value '<class 'easybuild.tools.repository.gitrepo.GitRepository'>') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_modules_tools' (value 'False') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'suffix_modules_path' (value 'all') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'recursive_module_unload' (value 'False') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_repositories' (value 'False') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'SvnRepository' (value '<class 'easybuild.tools.repository.svnrepo.SvnRepository'>') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key '__doc__' (value ' | |
| EasyBuild configuration file. | |
| This is now frozen. | |
| All new configuration should be done through the options parser. | |
| This is deprecated and will be removed in 2.0 | |
| @author: Stijn De Weirdt (Ghent University) | |
| @author: Dries Verdegem (Ghent University) | |
| @author: Kenneth Hoste (Ghent University) | |
| @author: Pieter De Baets (Ghent University) | |
| @author: Jens Timmerman (Ghent University) | |
| @author: Toon Willems (Ghent University) | |
| @author: Fotis Georgatos (Uni.Lu, NTUA) | |
| ') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'ignore_dirs' (value '['.git', '.svn']') | |
| == 2015-01-27 17:10:53,561 bootstrap_eb.config DEBUG Config variables: <FrozenDict {'modules_tool': 'Lmod', 'subdir_modules': 'modules', 'buildpath': '/tmp/tmp3P1tRE', 'repository': 'FileRepository', 'module_naming_scheme': 'EasyBuildMNS', 'sourcepath': ['/tmp/tmp3P1tRE/sources'], 'testoutput': None, 'installpath': '/n/local/scbc/inst/easyBuild', 'repositorypath': ['/tmp/tmp3P1tRE/ebfiles_repo'], 'moduleclasses': ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'], 'prefix': '/tmp/tmp3P1tRE', 'subdir_software': 'software', 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'tmp_logdir': '/tmp/easybuild-ANu7Lt', 'config': '/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py'}> | |
| == 2015-01-27 17:10:53,562 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no ignore | |
| == 2015-01-27 17:10:53,562 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value True. store action found | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False. store action found | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False. store action found | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found. | |
| == 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False. store action found | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False default found. | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False. store action found | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found. | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False. store action found | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found. | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False. store action found | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found. | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False. store action found | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found. | |
| == 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False. store action found | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found. | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True. store action found | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py default found. | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/home/mec/.easybuild/config.cfg'] default found. | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no value left, skipping. | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found | |
| == 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False. store action found | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False. store action found | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found. | |
| == 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False. store action found | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False. store action found | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found. | |
| == 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False. store action found | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False. store action found | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found. | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False. store action found | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /n/local/scbc/inst/easyBuild | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found. | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False. store action found | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found. | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False. store action found | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found. | |
| == 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value True. store action found | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found. | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found. | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found. | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value Lmod | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True default found. | |
| == 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True. store action found | |
| == 2015-01-27 17:10:53,571 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found. | |
| == 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found. | |
| == 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found. | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False. store action found | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found. | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False. store action found | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found. | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False. store action found | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found. | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False. store action found | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found. | |
| == 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] default found. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found. | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False. store action found | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found. | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False. store action found | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found. | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False. store action found | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found. | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False. store action found | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found. | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False. store action found | |
| == 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tmp/tmp3P1tRE/sources | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False. store action found | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp default found. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value ['goalf', '1.1.0-no-OFED'] | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None default found. | |
| == 2015-01-27 17:10:53,588 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None. None found. not adding to args. | |
| == 2015-01-27 17:10:53,588 bootstrap_eb.EasyBuildOptions DEBUG commandline args ['--allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-params', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tmp/tmp3P1tRE', '--cleanup-builddir', '--config=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/n/local/scbc/inst/easyBuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--logtostdout', '--module-naming-scheme=EasyBuildMNS', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=Lmod', '--oldstyleconfig', '--prefix=/tmp/tmp3P1tRE', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--robot-paths=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tmp/tmp3P1tRE/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--tmp-logdir=/tmp', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"'] | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Set command via environment variable LMOD_CMD | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Using command /n/local/scbc/inst/lmod/lmod/libexec/lmod | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.filetools INFO Command /n/local/scbc/inst/lmod/lmod/libexec/lmod found at /n/local/scbc/inst/lmod/lmod/libexec/lmod | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod INFO Full path for module command is /n/local/scbc/inst/lmod/lmod/libexec/lmod, so using it | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG $MODULEPATH after set_mod_paths: | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG self.mod_paths set based on $MODULEPATH: [] | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.filetools DEBUG Not creating existing path /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Current MODULEPATH: | |
| == 2015-01-27 17:10:53,599 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' | |
| == 2015-01-27 17:10:53,599 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all' from /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,681 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all': stdout: os.environ['LOADEDMODULES'] = '' | |
| del os.environ['LOADEDMODULES'] | |
| os.environ['MODULEPATH'] = '' | |
| del os.environ['MODULEPATH'] | |
| os.environ["PATH"] = "/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin"; | |
| os.environ['_LMFILES_'] = '' | |
| del os.environ['_LMFILES_'] | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ['LOADEDMODULES'] = '' | |
| del os.environ['LOADEDMODULES'] | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all"; | |
| os.environ["PATH"] = "/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin"; | |
| os.environ['_LMFILES_'] = '' | |
| del os.environ['_LMFILES_'] | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/', ''] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG $MODULEPATH after set_mod_paths: /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod INFO Prepended list of module paths with path used by EasyBuild: /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.filetools DEBUG Not creating existing path /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' | |
| == 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all' from /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,758 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: | |
| == 2015-01-27 17:10:53,759 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] | |
| == 2015-01-27 17:10:53,759 bootstrap_eb.Lmod INFO $MODULEPATH set based on list of module paths (via 'module use'): /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,759 bootstrap_eb.run DEBUG run_cmd: running cmd type module (in /tmp/tmp3P1tRE) | |
| == 2015-01-27 17:10:53,766 bootstrap_eb.run DEBUG cmd "type module" exited with exitcode 0 and output: | |
| module is a function | |
| module () | |
| { | |
| eval $($LMOD_CMD bash "$@"); | |
| [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh) | |
| } | |
| == 2015-01-27 17:10:53,766 bootstrap_eb.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2015-01-27 17:10:53,766 bootstrap_eb.Lmod DEBUG Found pattern '.*(lmod|LMOD_CMD)' in defined 'module' function. | |
| == 2015-01-27 17:10:53,766 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,767 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' | |
| == 2015-01-27 17:10:53,767 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --version' from /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,833 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --version': stdout: ; stderr: | |
| Modules based on Lua: Version 5.8.5 (5.8.5-1-g201a61d) 2015-01-23 15:54 | |
| by Robert McLay [email protected] | |
| == 2015-01-27 17:10:53,834 bootstrap_eb.Lmod INFO Found version 5.8.5 | |
| == 2015-01-27 17:10:53,834 bootstrap_eb.Lmod INFO Converted actual version to '5.8.5' | |
| == 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Version 5.8.5 matches requirement 5.6.3 | |
| == 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all | |
| == 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' | |
| == 2015-01-27 17:10:53,835 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --terse list' from /tmp/tmp3P1tRE | |
| == 2015-01-27 17:10:53,910 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::"; | |
| os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: | |
| == 2015-01-27 17:10:53,910 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] | |
| == 2015-01-27 17:10:53,911 bootstrap_eb DEBUG Initial session state: {'environment': {'BASH_FUNC_dupfind_name()': '() { find $1 -type f -printf \'%h\\t%f\\n\' | sort --field-separator=\'\t\' --key=2 | uniq --skip-fields=1 --all-repeated | perl -a -n -e \'print "dupfilename: $F[1]\\n" unless $lastkey eq $F[1]; $lastkey = pop(@F); print "\\t@F\\n"\'\n}', 'DBI_CONF': '/home/mec/.dbirc', 'QT_GRAPHICSSYSTEM_CHECKED': '1', 'BASH_FUNC_perlClassWhich()': '() { classname=$1;\n perl -MClass::ISA -MClass::Inspector -M$classname -e \'my $c = shift; my @c = Class::ISA::self_and_super_path("$c"); foreach my $fn (@ARGV) {print "\\n$fn:\\t", join "\\t", (grep {Class::Inspector->function_exists($_, $fn)} @c),"\\n"}\' $classname $@\n}', 'SHELL': '/bin/bash', 'BASH_FUNC_rnews()': "() { find /n/local/stage/r/R-3.0.2/install/lib64/R/library/* -maxdepth 0 ${@} | parallel -j 1 'echo {} & head {}/NEWS'\n}", 'BASH_FUNC_demo_molecular_weight()': '() { bioio --Module Bio::Tools::SeqStats --inopt format=fasta -n -e \'local ($,,$\\)=("\\t","\\n"); print $_->display_id, @{Bio::Tools::SeqStats->new($_)->get_mol_wt};\'\n}', 'HISTSIZE': '1000', 'DBI_DRIVER': 'mysql:test;host=mysql-dev', 'BASH_FUNC_seqargsflock()': '() { local N=$1;\n local P=$2;\n local H1=$3;\n local H2=$4;\n local INF=$5;\n local OUTF=$6;\n shift 6;\n local CMD=$@;\n rm -f $OUTF;\n eval \'printf "%s\\n"\' {1..$(( ${N} - 1 ))};\n xargs -P ${P} -i bash -c "nth -h=${H1} -n=${N} -m={} \\"${INF}\\" | ${CMD} | tmpflockappend ${H2} \\"${OUTF}\\""\n}', 'BASH_FUNC_mrw()': "() { find ${MRWPATH} -user ${USER} -name '*.org' | xargs ls -t -1 | tac\n}", 'BASH_FUNC_gfftabmap()': '() { local perlcode=$1;\n shift;\n perl -F\'\\t\' -lap -e \'BEGIN{$"="\\t"}; next unless $#F == 8;\' -e "$perlcode" -e\'$_= "@F"\' $@\n}', 'BASH_FUNC_quotearg()': '() { local q=("$@");\n echo ${q[0]} - ${q[@]};\n q=("${q[@]/#/\\\'}");\n echo ${q[0]} - ${q[@]};\n q=("${q[@]/%/\\\'}");\n echo ${q[1]} - ${q[@]};\n echo "${q[@]}"\n}', 'XDG_RUNTIME_DIR': '/run/user/1232', 'PYTHONPATH': '/tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg', 'LMOD_arch': 'x86_64', 'BASH_FUNC_transfacpatsearch()': '() { ${TRANSFAC}/patch/bin/patsearch $@\n}', 'XDG_SESSION_ID': '2161', 'TERMCAP': '', 'HOSTNAME': 'catalpa.sgc.loc', 'DSQUERY': 'SQLDEV01', 'MODULESHOME': '/n/local/scbc/inst/lmod/lmod', '_ModuleTable002_': 'ZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09Imxtb2QiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9MaW51eCIsIi9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9Db3JlIiwiL24vbG9jYWwvc2NiYy9pbnN0L2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsWyJ2ZXJzaW9uIl09Mix9', 'LMOD_PKG': '/n/local/scbc/inst/lmod/lmod', 'MAIL': '/var/spool/mail/mec', 'LS_COLORS': '', 'BASH_FUNC_llpfind()': '() { find ${LD_LIBRARY_PATH//:/ } /lib /usr/lib /usr/lib64 -maxdepth 1 $@ -print\n}', 'BASH_FUNC_TFmatrix2files()': '() { perl -ne \'print "$1\\n" if m/^AC\\s*(.*)/\' $TRANSFAC/data/matrix.dat | TFMatID2 $@\n}', 'TDSDUMPCONFIG': '/home/mec/.TDSDUMPCONFIG', 'LESSOPEN': '||/usr/bin/lesspipe.sh %s', 'LMOD_FULL_SETTARG_SUPPORT': 'no', 'BASH_FUNC_readseq()': '() { java -cp /n/facility/Bioinformatics/Software/Readseq/readseq.jar run -pipe $@\n}', 'EMACS': 't', 'USER': 'mec', 'PS1': '\\u@\\h> ', 'BASH_FUNC_tmpflockappend()': '() { local H=$1;\n local APPENDTO=$2;\n shift 2;\n local MKTEMPARGS=$@;\n TMPFILE=`mktemp ${MKTEMPARGS}` || return;\n cat > $TMPFILE;\n flock $APPENDTO --command "if [[ ! -s $APPENDTO ]] ; then cat $TMPFILE > $APPENDTO ; elif [[ 0 == ${H} ]] ; then cat $TMPFILE >> $APPENDTO ; else tail --lines=+$(( 1 + ${H} )) $TMPFILE >> $APPENDTO ; fi";\n rm -f $TMPFILE\n}', 'SHLVL': '2', 'BASH_FUNC_fastargs()': '() { local fastafile=$1;\n shift;\n local cmd=$@;\n seqcnt=`grep -c \'^>\' $fastafile`;\n seqcnt=4;\n for ((seqi=1 ; $seqi <= seqcnt ; seqi++))\n do\n echo -ne "<(fasta_item $seqi $fastafile 2> /dev/null)\\0000";\n done | xargs -0 -i /usr/local/bin/bash -c "\'$cmd\'"\n}', 'BASH_FUNC_pMooseCmd()': '() { local M=$1;\n shift;\n local E=\'BEGIN{$M\'=${M}\'->new_with_options();@ARGV=@{$M->extra_argv}}\';\n perl -M${M} -e ${E} "$@"\n}', 'BASH_FUNC_dbimapqry()': '() { perl -MDBI -MSQL::Library -sane \'BEGIN{our $dbh = DBI->connect($dsn, $user, $password); our $sth = $dbh->prepare(SQL::Library->new({lib => $lib})->retr($qry)); $,="\\t"; $\\="\\n";}; next if /^\\s*#/ or /^\\s*$/ ; $sth->execute(@F) or die $dbh->errstr; map {print @$_} @{$sth->fetchall_arrayref}\' -- $@\n}', 'EDITOR': 'emacsclient --alternate-editor="emacs -nw" -c ', 'HOMEBREW_VERBOSE': '1', 'BASH_FUNC_peval()': '() { local P=$1;\n shift;\n xargs -P $P -L 1 bash --noprofile --norc -c \'eval "$@"\' --\n}', 'FIGNORE': '/home/mec', 'CVSROOT': 'zeta:/data1/cvs', 'BASH_FUNC_perlWhichModuleVersion()': "() { local module=$1;\n shift;\n perl -M${module} -w -e 'my $modname = shift; my $VERS = $modname->VERSION; my $modfile = $modname; $modfile =~ s/\\:\\:/\\//g; $modfile .= q{.pm}; print qq{$modname\\t$VERS\\t$modfile\\t$INC{$modfile}\\n}' -- ${module}\n}", 'QT_PLUGIN_PATH': '/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins', 'BASH_FUNC_fatab()': "() { perl -0 -p -e 's/^([^>][^\\n]*)\\n(?!>)(?=.)/$1/gims; s/^(>[^\\n]*)\\n/$1\\t/gms; ' $@\n}", '_ModuleTable001_': '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', 'BASH_FUNC_fasta_item()': '() { java -cp /n/facility/Bioinformatics/Software/Readseq/readseq.jar run f=fasta -pipe informat=fa format=fa -item=$@\n}', 'MRWPATH': '/n/projects/mec/ShilatifardLab/analysis', 'PRINTER': 'PC010301', 'BASH_FUNC_transfacmatch()': '() { ${TRANSFAC}/match/bin/match $@\n}', 'BASH_ENV': '/n/local/scbc/inst/lmod/lmod/init/bash', 'BASH_FUNC_joinlines()': "() { local DELIM=$1;\n shift;\n perl -s -F'\\n' -0ape '$_=join($d,@F)' -- -d=${DELIM} $@\n}", 'BASH_FUNC_pM()': '() { local m=$1;\n local a=$2;\n shift 2;\n local e="BEGIN{\\$new||=q{new}; \\$M = $m->\\$new($a);}"\\ ;\n echo perl -w -M${m} -e "$e" "$@";\n perl -w -M${m} -e "$e" "$@"\n}', '_': '/usr/bin/python', 'MODULEPATH': '', 'PERL5LIB': '~/svn/bioperl-ext:~/svn/bioperl-live:', 'SSH_CONNECTION': '10.2.20.57 55665 10.0.53.20 22', 'BASH_FUNC_rdt()': '() { Rscript --vanilla --default-packages=data.table,utils -e "dt=fread(\'file:///dev/stdin\')" -e "invisible(write.table("$@",file=stdout(),quote=FALSE,sep=\'\\t\',row.names=FALSE))"\n}', 'SHELL_STARTUP_DEBUG': '1', 'LMOD_DEFAULT_MODULEPATH': '/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::', 'TRANSFAC': '/n/data1/biobase/transfac/current', 'BASH_FUNC_faunwrapseq()': "() { perl -0 -p -e 's/^([^>][^\\n]*)\\n(?!>)(?=.)/$1/gims;' $@\n}", 'BASH_FUNC_xxxxxasdf()': '() { local FINDARG=$1;\n local QSUBARG=$2;\n shift 2;\n find $FINDARG -print0 | xargs -0 -I{} qsub -j y -o /dev/null -terse -shell n -cwd -b y $@\n}', 'BASH_FUNC_famers()': '() { N=$1;\n shift;\n splitter -filter -osformat2 fasta -size ${N} -overlap $((${N} - 1)) "$@" | perl -p -e \'s/>(.*)\\_(\\d+)\\-(\\d+)/>$1:$2-$3/\'\n}', '_LMFILES_': '/n/local/scbc/inst/lmod/lmod/modulefiles/Core/lmod/5.8.5.lua', 'BASH_FUNC_fasplit()': '() { csplit --quiet $@ "%^>%" "/^>/" "{*}"\n}', 'LMOD_SETTARG_CMD': ':', 'LMOD_DIR': '/n/local/scbc/inst/lmod/lmod/libexec', 'BASH_FUNC_nth()': '() { perl -snwe \'BEGIN{our $n||=1; our $m=($n-1) unless defined($m); our $h||=0; die "required: m < n" unless $m < $n; our $sh} print $_ if (($. > $h ) ? (($. -1 - $h) % $n == $m) : ! $sh)\' -- $@\n}', 'BASH_FUNC_exonerateGFF()': "() { perl -ne 'print if ($range = m/^# --- START OF GFF DUMP ---/...m/^# --- END OF GFF DUMP ---/) && ($range ne 1) && ($range !~ /E0$/) && ! m/^#/' $@\n}", 'SELINUX_USE_CURRENT_RANGE': '', 'MODULEPATH_ROOT': '/n/local/scbc/inst/modulefiles', 'HOME': '/home/mec', 'BASH_FUNC_biodbfasta()': '() { path=$1;\n shift;\n perl -M\'Bio::DB::Fasta\' -e "BEGIN {\\$db=Bio::DB::Fasta->new(q{$path})}" "$@"\n}', 'LD_LIBRARY_PATH': '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:', 'LANG': 'en_US.UTF-8', 'DBI_DSN': 'DBI:mysql:test;host=mysql-dev', 'BASH_FUNC_gffseqoffset()': '() { perl -lane \'die "1st GFF column: $F[0] $seqid, $start, $stop" unless (($seqid, $start, $stop) = ($F[0] =~ m/^(\\w+):(\\d+)-(\\d+)$/)); $start -= 1; $F[0] = $seqid; $F[3] += $start; $F[4] += $start;$,="\\t";print @F\' $@\n}', '_ModuleTable_Sz_': '2', 'EASYBUILD_MODULES_TOOL': 'Lmod', 'BASH_FUNC_gffsort()': "() { /home/mec/local/src/coreutils-8.6/src/sort --field-separator='\t' --key=1,1 --key=4,5n $@\n}", 'BASH_FUNC_TFMatID2()': '() { perl -w -MTFBS::DB::LocalTRANSFAC -ne \'BEGIN{our $localdir = shift; our $db = TFBS::DB::LocalTRANSFAC->connect(-accept_conditions => 1, -localdir => $localdir ); our $fmt = shift; our $o = shift;} chomp; open(STDOUT,">","${o}${_}\\.${fmt}") if $o; print STDOUT $db->get_Matrix_by_acc($_,$fmt)->rawprint;\' -- $TRANSFAC/data $@\n}', 'MANPATH': '/n/local/scbc/inst/lmod/lmod/share/man::', 'BASH_FUNC_slice()': '() { perl -snwe \'BEGIN{our $n||=1; our $m=($n) unless defined($m); $m-=1; our $h||=0; die "required: m < n" unless $m < $n; our $sh} print $_ if (($. > $h ) ? (($. -1 - $h) % $n == $m) : ! $sh)\' -- $@\n}', 'BASH_FUNC_flockappend()': '() { local APPENDTO=$1;\n shift;\n flock $APPENDTO --command "cat $@ >> $APPENDTO"\n}', 'BASH_FUNC_gffoffset()': '() { local offset=$1;\n shift;\n local perlcode="@F[3] -= $offset; @F[4] -= $offset;";\n gfftabmap "$perlcode" $@\n}', 'LMOD_CMD': '/n/local/scbc/inst/lmod/lmod/libexec/lmod', 'SELINUX_ROLE_REQUESTED': '', 'BASH_FUNC_module()': '() { eval $($LMOD_CMD bash "$@");\n [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)\n}', 'BASH_FUNC_doi2bibtex()': '() { local doi=$1;\n shift;\n curl -LH \'Accept: application/x-bibtex\' "http://dx.doi.org/${doi}"\n}', 'COLUMNS': '211', 'KDEDIRS': '/usr', 'f': '/home/mec/.bash.d/bash_profile/TDS_SYBASE.sh', 'SSH_TTY': '/dev/pts/1', 'SELINUX_LEVEL_REQUESTED': '', 'BASH_FUNC_pDBI()': '() { pM DBI -s -- -new=connect "$@"\n}', 'BASH_FUNC_fastaSubsetByIndex()': '() { local indices=$1;\n shift;\n perl -MSet::IntSpan -wsne \'BEGIN{$r=Set::IntSpan->new("0,$r");$r->first}; if (m/^>/) {$current++; if ($current > $r->current) {$r->next; $rcurrent = $r->current; last unless $rcurrent}}; print if $rcurrent == $current\' -- -r=${indices}\n}', 'CUPS_SERVER': 'localhost', 'BASH_FUNC_vntigff_fuzztran()': '() { vntifkey=$1;\n pname=$2;\n pattern=$3;\n shift 3;\n fuzztran -filter -auto -rformat gff -pattern $pattern -pname $pname $@ | perl -a -F\'\\t\' -p -s -e \'next unless $#F == 8; $F[2]="match"; $F[8]="label $p ; vntifkey $v"; $_ = join("\\t", @F) . "\\n" \' -- -p=$pname -v=$vntifkey\n}', 'OLDPWD': '/home/mec/project/hpcbios', 'BASH_FUNC_lnsMatching()': '() { local dstPath=$1;\n local srcPath=$2;\n shift 2;\n local findExpr="$@";\n find ${srcPath} -xtype f ${findExpr} -printf \'mkdir -v -p ${dstPath}/%h && cp -v -f -s -t ${dstPath}/%h $(readlink -f %p)\\n\' | sh\n}', 'LINES': '57', 'BASH_FUNC_sortByTabCount()': '() { perl -ap -e \'$_="$#F\\t$_"\' "$@" | sort -nr | cut -f 1 --complement\n}', 'SSH_CLIENT': '10.2.20.57 55665 22', 'LOGNAME': 'mec', 'PATH': '/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lmod/lmod/libexec:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin', 'BASH_FUNC_nthline()': "() { N=$1;\n file=$2;\n sed $N'!d;q' $file\n}", 'BASH_FUNC_dupfind_md5sum()': '() { find $1 -type f -print0 | xargs -0 md5sum | sort | uniq --check-fields=1 --all-repeated | perl -a -n -e \'print "\\n" unless $lastmd5 == $F[0]; $lastmd5 = shift(@F); print "@F\\n"\'\n}', 'TERM': 'dumb', 'LMOD_PREPEND_BLOCK': 'normal', 'LMOD_COLORIZE': 'yes', 'COBBLER_SERVER': 'spacewalk.sgc.loc', 'HISTFILESIZE': '1000', 'INSIDE_EMACS': '24.3.1,comint', 'PLAT': 'linux-x86_64', 'TDSQUERY': 'SQLDEV01', 'DISPLAY': 'localhost:11.0', 'PYTHONSTARTUP': '/home/mec/.pythonrc.py', 'LMOD_sys': 'Linux', 'LOADEDMODULES': 'lmod/5.8.5', 'VISUAL': 'emacsclient -nw', 'HISTCONTROL': 'ignoredups', 'PWD': '/n/local/scbc/build/easyBuild', 'BASH_FUNC_ml()': '() { eval $($LMOD_DIR/ml_cmd "$@")\n}'}, 'module_list': [], 'system_info': {'glibc_version': '2.17', 'python_version': '2.7.5 (default, Jun 17 2014, 18:11:42) ; [GCC 4.8.2 20140120 (Red Hat 4.8.2-16)]', 'cpu_model': 'Intel(R) Xeon(R) CPU E5-2690 0 @ 2.90GHz', 'system_gcc_path': '/usr/bin/gcc', 'os_name': 'centos linux', 'cpu_speed': 2900.0, 'cpu_vendor': 'Intel', 'core_count': 1, 'gcc_version': 'Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC) ; ', 'hostname': 'catalpa.sgc.loc', 'platform_name': 'x86_64-unknown-linux', 'os_version': '7.0.1406', 'system_python_path': '/usr/bin/python', 'os_type': 'Linux'}, 'easybuild_configuration': ['--allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-params', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tmp/tmp3P1tRE', '--cleanup-builddir', '--config=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/n/local/scbc/inst/easyBuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--logtostdout', '--module-naming-scheme=EasyBuildMNS', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=Lmod', '--oldstyleconfig', '--prefix=/tmp/tmp3P1tRE', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--robot-paths=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tmp/tmp3P1tRE/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--tmp-logdir=/tmp', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"'], 'time': time.struct_time(tm_year=2015, tm_mon=1, tm_mday=27, tm_hour=23, tm_min=10, tm_sec=53, tm_wday=1, tm_yday=27, tm_isdst=0)} | |
| == 2015-01-27 17:10:53,911 bootstrap_eb.run DEBUG run_cmd: running cmd which eb (in /tmp/tmp3P1tRE) | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.run DEBUG cmd "which eb" exited with exitcode 0 and output: | |
| /tmp/tmp3P1tRE/eb_stage1/bin/eb | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Also considering installation prefix /tmp/tmp3P1tRE/eb_stage1... | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Added /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /n/local/scbc/build/easyBuild/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /home/mec/local/lib/python/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /n/local/scbc/build/easyBuild/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/easybuild/easyconfigs | |
| == 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG List of easyconfig files to find: [] | |
| == 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Looking for missing easyconfig files (0 left) in /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs... | |
| == 2015-01-27 17:10:53,922 bootstrap_eb DEBUG Paths: [('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb', False)] | |
| == 2015-01-27 17:10:53,924 bootstrap_eb.easyconfig.format.one DEBUG retrieve_blocks_in_spec: derived easyconfig format version: 1.0 | |
| == 2015-01-27 17:10:53,924 bootstrap_eb.easyconfig.easyconfig DEBUG Processing easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb | |
| == 2015-01-27 17:10:53,925 bootstrap_eb.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2015-01-27 17:10:53,934 bootstrap_eb.easyconfig.easyconfig INFO Derived full easyblock module path for EB_EasyBuildMeta: easybuild.easyblocks.easybuildmeta | |
| == 2015-01-27 17:10:53,935 bootstrap_eb.easyconfig.easyconfig INFO Successfully obtained class 'EB_EasyBuildMeta' for easyblock 'EB_EasyBuildMeta' (software name 'EasyBuild') | |
| == 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG Converting extra_options value '[('runtest', [True, 'Run unit tests.', (1, 'easyblock-specific')]), ('options', [{}, 'Dictionary with extension options.', (1, 'easyblock-specific')])]' of type '<class 'easybuild.tools.deprecated.eb_2_0.ExtraOptionsDeprecatedReturnValue'>' to a dict | |
| == 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG List of valid stops obtained: ['fetch', 'ready', 'source', 'patch', 'prepare', 'configure', 'build', 'test', 'install', 'extensions', 'package', 'postproc', 'sanitycheck', 'cleanup', 'module', 'testcases'] | |
| == 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG Obtained specs dict {'toolchain': {'version': '1.1.0-no-OFED', 'name': 'goalf'}, 'toolchain_version': '1.1.0-no-OFED', 'toolchain_name': 'goalf'} | |
| == 2015-01-27 17:10:53,936 bootstrap_eb.EasyConfigParser DEBUG Process filename /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb with get function (<function read_file at 0x24f8cf8>, ('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb',)), set function (<function write_file at 0x24f8ed8>, ('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb', None)) | |
| == 2015-01-27 17:10:53,936 bootstrap_eb.EasyConfigParser DEBUG No version found, using default 1.0 | |
| == 2015-01-27 17:10:53,938 bootstrap_eb.FormatOneZero DEBUG No section found. | |
| == 2015-01-27 17:10:53,938 bootstrap_eb.FormatOneZero DEBUG Found header | |
| == 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader initial global_vars {'OS_NAME': 'centos linux', 'Unknown': <easybuild.framework.easyconfig.licenses.LicenseUnknown object at 0x26c6bd0>, 'GPLv2': <easybuild.framework.easyconfig.licenses.LicenseGPLv2 object at 0x26c6c90>, 'GPLv3': <easybuild.framework.easyconfig.licenses.LicenseGPLv3 object at 0x26c6b50>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'Libpng': <easybuild.framework.easyconfig.licenses.LicenseLibpng object at 0x26c6cd0>, 'GNU_SAVANNAH_SOURCE': 'http://download.savannah.gnu.org/releases/%(namelower)s', 'PYPI_LOWER_SOURCE': 'http://pypi.python.org/packages/source/%(nameletterlower)s/%(namelower)s', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'XORG_UTIL_SOURCE': 'http://xorg.freedesktop.org/archive/individual/util/', 'BITBUCKET_DOWNLOADS': 'http://bitbucket.org/%(namelower)s/%(namelower)s/downloads', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'PYPI_SOURCE': 'http://pypi.python.org/packages/source/%(nameletter)s/%(name)s', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x26c6d10>, 'SYS_PYTHON_VERSION': '2.7.5', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(namelower)s', 'XORG_LIB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/lib/', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '7.0.1406', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'GCC': <easybuild.framework.easyconfig.licenses.LicenseGCC object at 0x26c6c50>, 'OS_TYPE': 'Linux', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'XORG_PROTO_SOURCE': 'http://xorg.freedesktop.org/archive/individual/proto/', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'XORG_DATA_SOURCE': 'http://xorg.freedesktop.org/archive/individual/data/', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'GCCOld': <easybuild.framework.easyconfig.licenses.LicenseGCCOld object at 0x26c6c10>, 'XORG_XCB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/xcb/', 'SOURCE_TAR': '%(name)s-%(version)s.tar'} | |
| == 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader initial local_vars {} | |
| == 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader text being exec'ed: easyblock = 'EB_EasyBuildMeta' | |
| name = 'EasyBuild' | |
| version = '1.16.1' | |
| homepage = 'http://hpcugent.github.com/easybuild/' | |
| description = """EasyBuild is a software build and installation framework | |
| written in Python that allows you to install software in a structured, | |
| repeatable and robust way.""" | |
| toolchain = {'name': 'dummy', 'version': 'dummy'} | |
| source_urls = [ | |
| 'http://pypi.python.org/packages/source/e/easybuild-framework/', | |
| 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', | |
| 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', | |
| ] | |
| # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) | |
| sources = [ | |
| 'easybuild-framework-1.16.1.tar.gz', | |
| 'easybuild-easyblocks-1.16.1.tar.gz', | |
| 'easybuild-easyconfigs-1.16.1.0.tar.gz', | |
| ] | |
| # EasyBuild is a (set of) Python packages, so it depends on Python | |
| # usually, we want to use the system Python, so no actual Python dependency is listed | |
| allow_system_deps = [('Python', SYS_PYTHON_VERSION)] | |
| == 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader final global_vars {'OS_NAME': 'centos linux', 'Unknown': <easybuild.framework.easyconfig.licenses.LicenseUnknown object at 0x26c6bd0>, 'GPLv2': <easybuild.framework.easyconfig.licenses.LicenseGPLv2 object at 0x26c6c90>, 'GPLv3': <easybuild.framework.easyconfig.licenses.LicenseGPLv3 object at 0x26c6b50>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'Libpng': <easybuild.framework.easyconfig.licenses.LicenseLibpng object at 0x26c6cd0>, 'GNU_SAVANNAH_SOURCE': 'http://download.savannah.gnu.org/releases/%(namelower)s', 'PYPI_LOWER_SOURCE': 'http://pypi.python.org/packages/source/%(nameletterlower)s/%(namelower)s', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'XORG_UTIL_SOURCE': 'http://xorg.freedesktop.org/archive/individual/util/', 'BITBUCKET_DOWNLOADS': 'http://bitbucket.org/%(namelower)s/%(namelower)s/downloads', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'PYPI_SOURCE': 'http://pypi.python.org/packages/source/%(nameletter)s/%(name)s', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x26c6d10>, 'SYS_PYTHON_VERSION': '2.7.5', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(namelower)s', '__builtins__': {'bytearray': <type 'bytearray'>, 'IndexError': <type 'exceptions.IndexError'>, 'all': <built-in function all>, 'help': Type help() for interactive help, or help(object) for help about object., 'vars': <built-in function vars>, 'SyntaxError': <type 'exceptions.SyntaxError'>, 'unicode': <type 'unicode'>, 'UnicodeDecodeError': <type 'exceptions.UnicodeDecodeError'>, 'memoryview': <type 'memoryview'>, 'isinstance': <built-in function isinstance>, 'copyright': Copyright (c) 2001-2013 Python Software Foundation. | |
| All Rights Reserved. | |
| Copyright (c) 2000 BeOpen.com. | |
| All Rights Reserved. | |
| Copyright (c) 1995-2001 Corporation for National Research Initiatives. | |
| All Rights Reserved. | |
| Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam. | |
| All Rights Reserved., 'NameError': <type 'exceptions.NameError'>, 'BytesWarning': <type 'exceptions.BytesWarning'>, 'dict': <type 'dict'>, 'input': <built-in function input>, 'oct': <built-in function oct>, 'bin': <built-in function bin>, 'SystemExit': <type 'exceptions.SystemExit'>, 'StandardError': <type 'exceptions.StandardError'>, 'format': <built-in function format>, 'repr': <built-in function repr>, 'sorted': <built-in function sorted>, 'False': False, 'RuntimeWarning': <type 'exceptions.RuntimeWarning'>, 'list': <type 'list'>, 'iter': <built-in function iter>, 'reload': <built-in function reload>, 'Warning': <type 'exceptions.Warning'>, '__package__': None, 'round': <built-in function round>, 'dir': <built-in function dir>, 'cmp': <built-in function cmp>, 'set': <type 'set'>, 'bytes': <type 'str'>, 'reduce': <built-in function reduce>, 'intern': <built-in function intern>, 'issubclass': <built-in function issubclass>, 'Ellipsis': Ellipsis, 'EOFError': <type 'exceptions.EOFError'>, 'locals': <built-in function locals>, 'BufferError': <type 'exceptions.BufferError'>, 'slice': <type 'slice'>, 'FloatingPointError': <type 'exceptions.FloatingPointError'>, 'sum': <built-in function sum>, 'getattr': <built-in function getattr>, 'abs': <built-in function abs>, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'print': <built-in function print>, 'True': True, 'FutureWarning': <type 'exceptions.FutureWarning'>, 'ImportWarning': <type 'exceptions.ImportWarning'>, 'None': None, 'hash': <built-in function hash>, 'ReferenceError': <type 'exceptions.ReferenceError'>, 'len': <built-in function len>, 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands | |
| for supporting Python development. See www.python.org for more information., 'frozenset': <type 'frozenset'>, '__name__': '__builtin__', 'ord': <built-in function ord>, 'super': <type 'super'>, 'TypeError': <type 'exceptions.TypeError'>, 'license': See http://www.python.org/2.7/license.html, 'KeyboardInterrupt': <type 'exceptions.KeyboardInterrupt'>, 'UserWarning': <type 'exceptions.UserWarning'>, 'filter': <built-in function filter>, 'range': <built-in function range>, 'staticmethod': <type 'staticmethod'>, 'SystemError': <type 'exceptions.SystemError'>, 'BaseException': <type 'exceptions.BaseException'>, 'pow': <built-in function pow>, 'RuntimeError': <type 'exceptions.RuntimeError'>, 'float': <type 'float'>, 'MemoryError': <type 'exceptions.MemoryError'>, 'StopIteration': <type 'exceptions.StopIteration'>, 'globals': <built-in function globals>, 'divmod': <built-in function divmod>, 'enumerate': <type 'enumerate'>, 'apply': <built-in function apply>, 'LookupError': <type 'exceptions.LookupError'>, 'open': <built-in function open>, 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'basestring': <type 'basestring'>, 'UnicodeError': <type 'exceptions.UnicodeError'>, 'zip': <built-in function zip>, 'hex': <built-in function hex>, 'long': <type 'long'>, 'next': <built-in function next>, 'ImportError': <type 'exceptions.ImportError'>, 'chr': <built-in function chr>, 'xrange': <type 'xrange'>, 'type': <type 'type'>, '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", 'Exception': <type 'exceptions.Exception'>, 'tuple': <type 'tuple'>, 'UnicodeTranslateError': <type 'exceptions.UnicodeTranslateError'>, 'reversed': <type 'reversed'>, 'UnicodeEncodeError': <type 'exceptions.UnicodeEncodeError'>, 'IOError': <type 'exceptions.IOError'>, 'hasattr': <built-in function hasattr>, 'delattr': <built-in function delattr>, 'setattr': <built-in function setattr>, 'raw_input': <built-in function raw_input>, 'SyntaxWarning': <type 'exceptions.SyntaxWarning'>, 'compile': <built-in function compile>, 'ArithmeticError': <type 'exceptions.ArithmeticError'>, 'str': <type 'str'>, 'property': <type 'property'>, 'GeneratorExit': <type 'exceptions.GeneratorExit'>, 'int': <type 'int'>, '__import__': <built-in function __import__>, 'KeyError': <type 'exceptions.KeyError'>, 'coerce': <built-in function coerce>, 'PendingDeprecationWarning': <type 'exceptions.PendingDeprecationWarning'>, 'file': <type 'file'>, 'EnvironmentError': <type 'exceptions.EnvironmentError'>, 'unichr': <built-in function unichr>, 'id': <built-in function id>, 'OSError': <type 'exceptions.OSError'>, 'DeprecationWarning': <type 'exceptions.DeprecationWarning'>, 'min': <built-in function min>, 'UnicodeWarning': <type 'exceptions.UnicodeWarning'>, 'execfile': <built-in function execfile>, 'any': <built-in function any>, 'complex': <type 'complex'>, 'bool': <type 'bool'>, 'ValueError': <type 'exceptions.ValueError'>, 'NotImplemented': NotImplemented, 'map': <built-in function map>, 'buffer': <type 'buffer'>, 'max': <built-in function max>, 'object': <type 'object'>, 'TabError': <type 'exceptions.TabError'>, 'callable': <built-in function callable>, 'ZeroDivisionError': <type 'exceptions.ZeroDivisionError'>, 'eval': <built-in function eval>, '__debug__': True, 'IndentationError': <type 'exceptions.IndentationError'>, 'AssertionError': <type 'exceptions.AssertionError'>, 'classmethod': <type 'classmethod'>, 'UnboundLocalError': <type 'exceptions.UnboundLocalError'>, 'NotImplementedError': <type 'exceptions.NotImplementedError'>, 'AttributeError': <type 'exceptions.AttributeError'>, 'OverflowError': <type 'exceptions.OverflowError'>}, 'XORG_LIB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/lib/', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '7.0.1406', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'GCC': <easybuild.framework.easyconfig.licenses.LicenseGCC object at 0x26c6c50>, 'OS_TYPE': 'Linux', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'XORG_PROTO_SOURCE': 'http://xorg.freedesktop.org/archive/individual/proto/', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'XORG_DATA_SOURCE': 'http://xorg.freedesktop.org/archive/individual/data/', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'GCCOld': <easybuild.framework.easyconfig.licenses.LicenseGCCOld object at 0x26c6c10>, 'XORG_XCB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/xcb/', 'SOURCE_TAR': '%(name)s-%(version)s.tar'} | |
| == 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG pyheader final local_vars {'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'EasyBuild', 'allow_system_deps': [('Python', '2.7.5')], 'sources': ['easybuild-framework-1.16.1.tar.gz', 'easybuild-easyblocks-1.16.1.tar.gz', 'easybuild-easyconfigs-1.16.1.0.tar.gz'], 'version': '1.16.1', 'source_urls': ['http://pypi.python.org/packages/source/e/easybuild-framework/', 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/'], 'easyblock': 'EB_EasyBuildMeta', 'homepage': 'http://hpcugent.github.com/easybuild/', 'description': 'EasyBuild is a software build and installation framework\nwritten in Python that allows you to install software in a structured,\nrepeatable and robust way.'} | |
| == 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG No docstring found in local_vars | |
| == 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG Set copy of specs {'toolchain': {'version': '1.1.0-no-OFED', 'name': 'goalf'}, 'toolchain_version': '1.1.0-no-OFED', 'toolchain_name': 'goalf'} | |
| == 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero ERROR EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy | |
| == 2015-01-27 17:10:53,948 bootstrap_eb.easyconfig.easyconfig ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:117 in exception): EasyBuild encountered an exception (at easybuild/framework/easyconfig/easyconfig.py:937 in process_easyconfig): Failed to process easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb: | |
| EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy | |
| Traceback (most recent call last): | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 934, in process_easyconfig | |
| ec = EasyConfig(spec, build_specs=build_specs, validate=validate, hidden=hidden) | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 203, in __init__ | |
| self.parse() | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 263, in parse | |
| local_vars = parser.get_config_dict() | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/parser.py", line 148, in get_config_dict | |
| return self._formatter.get_config_dict() | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/format/one.py", line 79, in get_config_dict | |
| self.log.error('Requested toolchain name %s not available, only %s' % (spec_tc_name, tc_name)) | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/tools/build_log.py", line 109, in error | |
| raise EasyBuildError(newMsg) | |
| EasyBuildError: 'EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy' | |
| Traceback (most recent call last): | |
| File "bootstrap_eb.py", line 584, in <module> | |
| main() | |
| File "bootstrap_eb.py", line 411, in main | |
| stage2(tmpdir, versions, install_path) | |
| File "bootstrap_eb.py", line 360, in stage2 | |
| easybuild_main() | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/main.py", line 251, in main | |
| easyconfigs, generated_ecs = parse_easyconfigs(paths) | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/tools.py", line 315, in parse_easyconfigs | |
| ecs = process_easyconfig(ec_file, **kwargs) | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 937, in process_easyconfig | |
| _log.exception(msg) | |
| File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/tools/build_log.py", line 120, in exception | |
| raise EasyBuildError(newMsg) | |
| easybuild.tools.build_log.EasyBuildError: 'EasyBuild encountered an exception (at easybuild/framework/easyconfig/easyconfig.py:937 in process_easyconfig): Failed to process easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb:\nEasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy' |
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