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January 3, 2025 02:21
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47988552_0 job log
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| /etc/profile.d/modules.sh: line 11: /etc/eessi/init_eessi_icer: Permission denied | |
| initialization telemetry ------------------------------------ 0 | |
| SOURCE_REVISION f9c054a01fd961b22731cde6fb22de84e23871d9 | |
| BATCHDIR /mnt/home/mmore500/scratch/hstrat-reconstruction-algo/2024-12-28-bigreconstruct-v1.16.0-bigmem/2025-01-02 | |
| cc SLURM script --------------------------------------------- 0 | |
| JOBSCRIPT /mnt/home/mmore500/jobscript/47988778 | |
| cc job log -------------------------------------------------- 0 | |
| JOBLOG /mnt/home/mmore500/joblog/47988778 | |
| setup JOBDIR ------------------------------------------------ 0 | |
| JOBDIR /mnt/home/mmore500/scratch/hstrat-reconstruction-algo/2024-12-28-bigreconstruct-v1.16.0-bigmem/2025-01-02/__0 | |
| PWD /mnt/home/mmore500/scratch/hstrat-reconstruction-algo/2024-12-28-bigreconstruct-v1.16.0-bigmem/2025-01-02/__0 | |
| job telemetry ----------------------------------------------- 0 | |
| source SLURM_JOB_ID nojid | |
| current SLURM_JOB_ID 47988778 | |
| SLURM_ARRAY_TASK_ID 0 | |
| hostname vim-000 | |
| date Thu Jan 2 11:30:20 AM EST 2025 | |
| module setup ------------------------------------------------ 0 | |
| Lmod has detected the following error: The following module(s) are unknown: | |
| "python/3.8.6" | |
| Please check the spelling or version number. Also try "module spider ..." | |
| It is also possible your cache file is out-of-date; it may help to try: | |
| $ module --ignore_cache load "python/3.8.6" | |
| Also make sure that all modulefiles written in TCL start with the string | |
| #%Module | |
| python3.8 /opt/software-current/2023.06/x86_64/generic/software/Python/3.8.6-GCCcore-10.2.0/bin/python3.8 | |
| python3.8 --version Python 3.8.6 | |
| setup dependencies- ----------------------------------------- 3 | |
| alabaster @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/alabaster/alabaster-0.7.12 | |
| appdirs @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/appdirs/appdirs-1.4.4 | |
| asn1crypto @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/asn1crypto/asn1crypto-1.4.0 | |
| atomicwrites @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/atomicwrites/atomicwrites-1.4.0 | |
| attrs @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/attrs/attrs-20.2.0 | |
| Babel @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/Babel/Babel-2.8.0 | |
| bcrypt @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/bcrypt/bcrypt-3.2.0 | |
| bitstring @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/bitstring/bitstring-3.1.7 | |
| blist @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/blist/blist-1.3.6 | |
| CacheControl @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/CacheControl/CacheControl-0.12.6 | |
| cachy @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/cachy/cachy-0.3.0 | |
| certifi @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/certifi/certifi-2020.6.20 | |
| cffi @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/cffi/cffi-1.14.3 | |
| chardet @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/chardet/chardet-3.0.4 | |
| cleo @ file:///mnt/research/helpdesk/src/p/Python/extensions/cleo-0.8.1-py2.py3-none-any.whl | |
| click @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/click/click-7.1.2 | |
| clikit @ file:///mnt/research/helpdesk/src/p/Python/extensions/clikit-0.6.2-py2.py3-none-any.whl | |
| colorama @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/colorama/colorama-0.4.3 | |
| crashtest @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/crashtest/crashtest-0.3.1 | |
| cryptography @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/cryptography/cryptography-3.1.1 | |
| Cython @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/Cython/Cython-0.29.21 | |
| decorator @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/decorator/decorator-4.4.2 | |
| distlib @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/distlib/distlib-0.3.1 | |
| docopt @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/docopt/docopt-0.6.2 | |
| docutils @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/docutils/docutils-0.16 | |
| ecdsa @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/ecdsa/ecdsa-0.16.0 | |
| filelock @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/filelock/filelock-3.0.12 | |
| flit @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/flit/flit-3.0.0 | |
| flit_core @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/flitcore/flit_core-3.0.0 | |
| fsspec @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/fsspec/fsspec-0.8.4 | |
| future @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/future/future-0.18.2 | |
| html5lib @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/html5lib/html5lib-1.1 | |
| idna @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/idna/idna-2.10 | |
| imagesize @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/imagesize/imagesize-1.2.0 | |
| importlib-metadata @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/importlib_metadata/importlib_metadata-2.0.0 | |
| iniconfig @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/iniconfig/iniconfig-1.0.1 | |
| intervaltree @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/intervaltree/intervaltree-3.1.0 | |
| intreehooks @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/intreehooks/intreehooks-1.0 | |
| ipaddress @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/ipaddress/ipaddress-1.0.23 | |
| jeepney @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/jeepney/jeepney-0.4.3 | |
| Jinja2 @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/Jinja2/Jinja2-2.11.2 | |
| joblib @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/joblib/joblib-0.17.0 | |
| joinem==0.9.1 | |
| jsonschema @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/jsonschema/jsonschema-3.2.0 | |
| keyring @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/keyring/keyring-21.4.0 | |
| keyrings.alt @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/keyringsalt/keyrings.alt-4.0.0 | |
| liac-arff @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/liacarff/liac-arff-2.5.0 | |
| lockfile @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/lockfile/lockfile-0.12.2 | |
| MarkupSafe @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/MarkupSafe/MarkupSafe-1.1.1 | |
| mock @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/mock/mock-4.0.2 | |
| more-itertools @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/moreitertools/more-itertools-8.5.0 | |
| msgpack @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/msgpack/msgpack-1.0.0 | |
| netaddr @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/netaddr/netaddr-0.8.0 | |
| netifaces @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/netifaces/netifaces-0.10.9 | |
| nose @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/nose/nose-1.3.7 | |
| numpy==1.24.4 | |
| packaging @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/packaging/packaging-20.4 | |
| paramiko @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/paramiko/paramiko-2.7.2 | |
| pastel @ file:///mnt/research/helpdesk/src/p/Python/extensions/pastel-0.2.1-py2.py3-none-any.whl | |
| pathlib2 @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pathlib2/pathlib2-2.3.5 | |
| paycheck @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/paycheck/paycheck-1.0.2 | |
| pbr @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pbr/pbr-5.5.0 | |
| pexpect @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pexpect/pexpect-4.8.0 | |
| pkginfo @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pkginfo/pkginfo-1.5.0.1 | |
| pluggy @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pluggy/pluggy-0.13.1 | |
| poetry @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/poetry/poetry-1.1.3 | |
| poetry-core @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/poetrycore/poetry-core-1.0.0 | |
| polars==1.8.2 | |
| polars-u64-idx==1.8.2 | |
| psutil @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/psutil/psutil-5.7.2 | |
| ptyprocess @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/ptyprocess/ptyprocess-0.6.0 | |
| py @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/py/py-1.9.0 | |
| py-expression-eval @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/py_expression_eval/py_expression_eval-0.3.10 | |
| pyarrow==17.0.0 | |
| pyasn1 @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pyasn1/pyasn1-0.4.8 | |
| pycparser @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pycparser/pycparser-2.20 | |
| pycrypto @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pycrypto/pycrypto-2.6.1 | |
| Pygments @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/Pygments/Pygments-2.7.1 | |
| pylev @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pylev/pylev-1.3.0 | |
| pylib @ file:///mnt/home/mmore500/scratch/hstrat-reconstruction-algo/2024-12-28-bigreconstruct-v1.16.0-bigmem/2025-01-02/_jobsource | |
| PyNaCl @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/PyNaCl/PyNaCl-1.4.0 | |
| pyparsing @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pyparsing/pyparsing-2.4.7 | |
| pyrsistent @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pyrsistent/pyrsistent-0.17.3 | |
| pytest @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pytest/pytest-6.1.1 | |
| python-dateutil @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pythondateutil/python-dateutil-2.8.1 | |
| pytoml @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pytoml/pytoml-0.1.21 | |
| pytz @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/pytz/pytz-2020.1 | |
| regex @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/regex/regex-2020.10.11 | |
| requests @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/requests/requests-2.24.0 | |
| requests-toolbelt @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/requeststoolbelt/requests-toolbelt-0.9.1 | |
| scandir @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/scandir/scandir-1.10.0 | |
| SecretStorage @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/SecretStorage/SecretStorage-3.1.2 | |
| setuptools-scm @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/setuptools_scm/setuptools_scm-4.1.2 | |
| shellingham @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/shellingham/shellingham-1.3.2 | |
| simplegeneric @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/simplegeneric/simplegeneric-0.8.1 | |
| simplejson @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/simplejson/simplejson-3.17.2 | |
| six @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/six/six-1.15.0 | |
| snowballstemmer @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/snowballstemmer/snowballstemmer-2.0.0 | |
| sortedcontainers @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sortedcontainers/sortedcontainers-2.2.2 | |
| Sphinx @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/Sphinx/Sphinx-3.2.1 | |
| sphinx-bootstrap-theme @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxbootstraptheme/sphinx-bootstrap-theme-0.7.1 | |
| sphinxcontrib-applehelp @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribapplehelp/sphinxcontrib-applehelp-1.0.2 | |
| sphinxcontrib-devhelp @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribdevhelp/sphinxcontrib-devhelp-1.0.2 | |
| sphinxcontrib-htmlhelp @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribhtmlhelp/sphinxcontrib-htmlhelp-1.0.3 | |
| sphinxcontrib-jsmath @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribjsmath/sphinxcontrib-jsmath-1.0.1 | |
| sphinxcontrib-qthelp @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribqthelp/sphinxcontrib-qthelp-1.0.3 | |
| sphinxcontrib-serializinghtml @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribserializinghtml/sphinxcontrib-serializinghtml-1.1.4 | |
| sphinxcontrib-websupport @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/sphinxcontribwebsupport/sphinxcontrib-websupport-1.2.4 | |
| tabulate @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/tabulate/tabulate-0.8.7 | |
| threadpoolctl @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/threadpoolctl/threadpoolctl-2.1.0 | |
| toml @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/toml/toml-0.10.1 | |
| tomlkit @ file:///mnt/research/helpdesk/src/p/Python/extensions/tomlkit-0.7.0-py2.py3-none-any.whl | |
| tqdm==4.67.1 | |
| ujson @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/ujson/ujson-4.0.1 | |
| urllib3 @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/urllib3/urllib3-1.25.10 | |
| virtualenv @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/virtualenv/virtualenv-20.0.34 | |
| wcwidth @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/wcwidth/wcwidth-0.2.5 | |
| webencodings @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/webencodings/webencodings-0.5.1 | |
| xlrd @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/xlrd/xlrd-1.2.0 | |
| zipp @ file:///tmp/grosscra/easybuild/easybuild/build/Python/3.8.6/GCCcore-10.2.0/zipp/zipp-3.3.0 | |
| lscpu ------------------------------------------------------- 5 | |
| Architecture: x86_64 | |
| CPU op-mode(s): 32-bit, 64-bit | |
| Address sizes: 46 bits physical, 48 bits virtual | |
| Byte Order: Little Endian | |
| CPU(s): 64 | |
| On-line CPU(s) list: 0-63 | |
| Vendor ID: GenuineIntel | |
| Model name: Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| CPU family: 6 | |
| Model: 63 | |
| Thread(s) per core: 1 | |
| Core(s) per socket: 16 | |
| Socket(s): 4 | |
| Stepping: 4 | |
| CPU max MHz: 3300.0000 | |
| CPU min MHz: 1200.0000 | |
| BogoMIPS: 4987.74 | |
| Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| Virtualization: VT-x | |
| L1d cache: 2 MiB (64 instances) | |
| L1i cache: 2 MiB (64 instances) | |
| L2 cache: 16 MiB (64 instances) | |
| L3 cache: 180 MiB (4 instances) | |
| NUMA node(s): 4 | |
| NUMA node0 CPU(s): 0-15 | |
| NUMA node1 CPU(s): 16-31 | |
| NUMA node2 CPU(s): 32-47 | |
| NUMA node3 CPU(s): 48-63 | |
| Vulnerability Gather data sampling: Not affected | |
| Vulnerability Itlb multihit: KVM: Mitigation: VMX disabled | |
| Vulnerability L1tf: Mitigation; PTE Inversion; VMX conditional cache flushes, SMT disabled | |
| Vulnerability Mds: Mitigation; Clear CPU buffers; SMT disabled | |
| Vulnerability Meltdown: Mitigation; PTI | |
| Vulnerability Mmio stale data: Mitigation; Clear CPU buffers; SMT disabled | |
| Vulnerability Reg file data sampling: Not affected | |
| Vulnerability Retbleed: Not affected | |
| Vulnerability Spec rstack overflow: Not affected | |
| Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl and seccomp | |
| Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization | |
| Vulnerability Spectre v2: Mitigation; Retpolines; IBPB conditional; IBRS_FW; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected | |
| Vulnerability Srbds: Not affected | |
| Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT disabled | |
| lshw -------------------------------------------------------- 5 | |
| lshw: /opt/software-current/2023.06/x86_64/generic/software/GCCcore/10.2.0/lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by lshw) | |
| cpuinfo ----------------------------------------------------- 5 | |
| processor : 0 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 0 | |
| cpu cores : 16 | |
| apicid : 0 | |
| initial apicid : 0 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 1 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 1 | |
| cpu cores : 16 | |
| apicid : 2 | |
| initial apicid : 2 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 2 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 2 | |
| cpu cores : 16 | |
| apicid : 4 | |
| initial apicid : 4 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 3 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 3 | |
| cpu cores : 16 | |
| apicid : 6 | |
| initial apicid : 6 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 4 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 4 | |
| cpu cores : 16 | |
| apicid : 8 | |
| initial apicid : 8 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 5 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 8 | |
| cpu cores : 16 | |
| apicid : 16 | |
| initial apicid : 16 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 6 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 9 | |
| cpu cores : 16 | |
| apicid : 18 | |
| initial apicid : 18 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 7 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 3300.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 10 | |
| cpu cores : 16 | |
| apicid : 20 | |
| initial apicid : 20 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 8 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 11 | |
| cpu cores : 16 | |
| apicid : 22 | |
| initial apicid : 22 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 9 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 16 | |
| cpu cores : 16 | |
| apicid : 32 | |
| initial apicid : 32 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 10 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 17 | |
| cpu cores : 16 | |
| apicid : 34 | |
| initial apicid : 34 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 11 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 18 | |
| cpu cores : 16 | |
| apicid : 36 | |
| initial apicid : 36 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 12 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 20 | |
| cpu cores : 16 | |
| apicid : 40 | |
| initial apicid : 40 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 13 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 24 | |
| cpu cores : 16 | |
| apicid : 48 | |
| initial apicid : 48 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 14 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 25 | |
| cpu cores : 16 | |
| apicid : 50 | |
| initial apicid : 50 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 15 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 0 | |
| siblings : 16 | |
| core id : 27 | |
| cpu cores : 16 | |
| apicid : 54 | |
| initial apicid : 54 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4987.74 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 16 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 0 | |
| cpu cores : 16 | |
| apicid : 64 | |
| initial apicid : 64 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 17 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 1 | |
| cpu cores : 16 | |
| apicid : 66 | |
| initial apicid : 66 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 18 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 2 | |
| cpu cores : 16 | |
| apicid : 68 | |
| initial apicid : 68 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 19 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 3 | |
| cpu cores : 16 | |
| apicid : 70 | |
| initial apicid : 70 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 20 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 4 | |
| cpu cores : 16 | |
| apicid : 72 | |
| initial apicid : 72 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 21 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 8 | |
| cpu cores : 16 | |
| apicid : 80 | |
| initial apicid : 80 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 22 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 9 | |
| cpu cores : 16 | |
| apicid : 82 | |
| initial apicid : 82 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 23 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 10 | |
| cpu cores : 16 | |
| apicid : 84 | |
| initial apicid : 84 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 24 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 11 | |
| cpu cores : 16 | |
| apicid : 86 | |
| initial apicid : 86 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 25 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 16 | |
| cpu cores : 16 | |
| apicid : 96 | |
| initial apicid : 96 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 26 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 17 | |
| cpu cores : 16 | |
| apicid : 98 | |
| initial apicid : 98 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 27 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 18 | |
| cpu cores : 16 | |
| apicid : 100 | |
| initial apicid : 100 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 28 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 20 | |
| cpu cores : 16 | |
| apicid : 104 | |
| initial apicid : 104 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 29 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 24 | |
| cpu cores : 16 | |
| apicid : 112 | |
| initial apicid : 112 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 30 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 25 | |
| cpu cores : 16 | |
| apicid : 114 | |
| initial apicid : 114 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 31 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 1 | |
| siblings : 16 | |
| core id : 27 | |
| cpu cores : 16 | |
| apicid : 118 | |
| initial apicid : 118 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4989.54 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 32 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 0 | |
| cpu cores : 16 | |
| apicid : 128 | |
| initial apicid : 128 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 33 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 1 | |
| cpu cores : 16 | |
| apicid : 130 | |
| initial apicid : 130 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 34 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 2 | |
| cpu cores : 16 | |
| apicid : 132 | |
| initial apicid : 132 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 35 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 3 | |
| cpu cores : 16 | |
| apicid : 134 | |
| initial apicid : 134 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 36 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 4 | |
| cpu cores : 16 | |
| apicid : 136 | |
| initial apicid : 136 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 37 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 8 | |
| cpu cores : 16 | |
| apicid : 144 | |
| initial apicid : 144 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 38 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 9 | |
| cpu cores : 16 | |
| apicid : 146 | |
| initial apicid : 146 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 39 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 10 | |
| cpu cores : 16 | |
| apicid : 148 | |
| initial apicid : 148 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 40 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 11 | |
| cpu cores : 16 | |
| apicid : 150 | |
| initial apicid : 150 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 41 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 16 | |
| cpu cores : 16 | |
| apicid : 160 | |
| initial apicid : 160 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 42 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 17 | |
| cpu cores : 16 | |
| apicid : 162 | |
| initial apicid : 162 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 43 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 18 | |
| cpu cores : 16 | |
| apicid : 164 | |
| initial apicid : 164 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 44 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 20 | |
| cpu cores : 16 | |
| apicid : 168 | |
| initial apicid : 168 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 45 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 24 | |
| cpu cores : 16 | |
| apicid : 176 | |
| initial apicid : 176 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 46 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 25 | |
| cpu cores : 16 | |
| apicid : 178 | |
| initial apicid : 178 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 47 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 2 | |
| siblings : 16 | |
| core id : 27 | |
| cpu cores : 16 | |
| apicid : 182 | |
| initial apicid : 182 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.08 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 48 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 0 | |
| cpu cores : 16 | |
| apicid : 192 | |
| initial apicid : 192 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 49 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 1 | |
| cpu cores : 16 | |
| apicid : 194 | |
| initial apicid : 194 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 50 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 2 | |
| cpu cores : 16 | |
| apicid : 196 | |
| initial apicid : 196 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 51 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 3 | |
| cpu cores : 16 | |
| apicid : 198 | |
| initial apicid : 198 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 52 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 4 | |
| cpu cores : 16 | |
| apicid : 200 | |
| initial apicid : 200 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 53 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 8 | |
| cpu cores : 16 | |
| apicid : 208 | |
| initial apicid : 208 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 54 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 9 | |
| cpu cores : 16 | |
| apicid : 210 | |
| initial apicid : 210 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 55 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 10 | |
| cpu cores : 16 | |
| apicid : 212 | |
| initial apicid : 212 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 56 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 11 | |
| cpu cores : 16 | |
| apicid : 214 | |
| initial apicid : 214 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 57 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 16 | |
| cpu cores : 16 | |
| apicid : 224 | |
| initial apicid : 224 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 58 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 17 | |
| cpu cores : 16 | |
| apicid : 226 | |
| initial apicid : 226 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 59 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 18 | |
| cpu cores : 16 | |
| apicid : 228 | |
| initial apicid : 228 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 60 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 2900.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 20 | |
| cpu cores : 16 | |
| apicid : 232 | |
| initial apicid : 232 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 61 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 2100.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 24 | |
| cpu cores : 16 | |
| apicid : 240 | |
| initial apicid : 240 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 62 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1815.177 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 25 | |
| cpu cores : 16 | |
| apicid : 242 | |
| initial apicid : 242 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 63 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E7-8867 v3 @ 2.50GHz | |
| stepping : 4 | |
| microcode : 0x1a | |
| cpu MHz : 1200.000 | |
| cache size : 46080 KB | |
| physical id : 3 | |
| siblings : 16 | |
| core id : 27 | |
| cpu cores : 16 | |
| apicid : 246 | |
| initial apicid : 246 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts md_clear flush_l1d | |
| vmx flags : vnmi preemption_timer posted_intr invvpid ept_x_only ept_ad ept_1gb flexpriority apicv tsc_offset vtpr mtf vapic ept vpid unrestricted_guest vapic_reg vid ple shadow_vmcs | |
| bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs taa itlb_multihit mmio_stale_data | |
| bogomips : 4990.45 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| configure replicate ----------------------------------------- 5 | |
| config phylo_source_path='/mnt/home/mmore500/scratch/2024-12-25/lex12+async-ga/wse-sketches+genome-flavor=genome_purifyingonly+seed=1/kernel-async-ga/a=fossils+flavor=genome_purifyingonly+seed=1+ncycle=5000000+ext=.pqt' num_tips='100000000' | |
| phylo_source_path /mnt/home/mmore500/scratch/2024-12-25/lex12+async-ga/wse-sketches+genome-flavor=genome_purifyingonly+seed=1/kernel-async-ga/a=fossils+flavor=genome_purifyingonly+seed=1+ncycle=5000000+ext=.pqt | |
| num_tips 100000000 | |
| phylo_source_path /mnt/home/mmore500/scratch/2024-12-25/lex12+async-ga/wse-sketches+genome-flavor=genome_purifyingonly+seed=1/kernel-async-ga/a=fossils+flavor=genome_purifyingonly+seed=1+ncycle=5000000+ext=.pqt | |
| configure --------------------------------------------------- 5 | |
| LOCAL | |
| TMPDIR /tmp/local/47988778 | |
| MYLOCAL /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0 | |
| genomes_inpath /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/genomes.pqt | |
| reconst_outpath /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/trie.pqt | |
| phylo_outpath /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/phylo.pqt | |
| phylo_source_path exists, copying into place | |
| phylo_source_path /mnt/gs21/scratch/mmore500/2024-12-25/lex12+async-ga/wse-sketches+genome-flavor=genome_purifyingonly+seed=1/kernel-async-ga/a=fossils+flavor=genome_purifyingonly+seed=1+ncycle=5000000+ext=.pqt | |
| -rw-r----- 1 mmore500 beacon 36580915684 Dec 27 01:27 /mnt/gs21/scratch/mmore500/2024-12-25/lex12+async-ga/wse-sketches+genome-flavor=genome_purifyingonly+seed=1/kernel-async-ga/a=fossils+flavor=genome_purifyingonly+seed=1+ncycle=5000000+ext=.pqt | |
| -rw-r----- 1 mmore500 beacon 36580915684 Jan 2 11:30 /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/genomes.pqt | |
| 35G /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/genomes.pqt | |
| container docker://ghcr.io/mmore500/hstrat:v1.16.0 | |
| do work ----------------------------------------------------- 33 | |
| warmup jit cache | |
| INFO: Using cached SIF image | |
| /usr/local/lib/python3.12/dist-packages/alifedata_phyloinformatics_convert/_impl/phytrack_Systematcs.py:7: UserWarning: ImportWarning: phylotrackpy.Systematics import failed; inserting a no-op mock for Systematics. This is likely because phylotrackpy is not installed. | |
| warnings.warn( | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:365: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:436: SyntaxWarning: invalid escape sequence '\-' | |
| """Prunes the topology of a node to conserve only the selected list of leaf | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:1508: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:51: SyntaxWarning: invalid escape sequence '\[' | |
| _ILEGAL_NEWICK_CHARS = ":;(),\[\]\t\n\r=" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:54: SyntaxWarning: invalid escape sequence '\[' | |
| _NHX_RE = "\[&&NHX:[^\]]*\]" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:55: SyntaxWarning: invalid escape sequence '\s' | |
| _FLOAT_RE = "\s*[+-]?\d+\.?\d*(?:[eE][-+]?\d+)?\s*" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:402: SyntaxWarning: invalid escape sequence '\s' | |
| matcher_str= '^\s*%s\s*%s\s*(%s)?\s*$' % (FIRST_MATCH, SECOND_MATCH, _NHX_RE) | |
| /usr/local/lib/python3.12/dist-packages/ete3/utils.py:82: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:76: SyntaxWarning: invalid escape sequence '\s' | |
| m = re.match("^\s*(\d+)\s+(\d+)",line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:108: SyntaxWarning: invalid escape sequence '\s' | |
| SG.id2seq[id_counter] += re.sub("\s","", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:123: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s","",m.groups()[1]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:138: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s", "", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:132: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])?(\d+)([^0-9])?") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:188: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])(\d+)([^0-9])") | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:74: SyntaxWarning: invalid escape sequence '\(' | |
| k = int(re.sub ('.* \(K=([0-9]+)\)\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:78: SyntaxWarning: invalid escape sequence '\d' | |
| re.match ('^[a-z]+.*(\d+\.\d{5} *){'+ str(k) +'}', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:82: SyntaxWarning: invalid escape sequence '\d' | |
| classes[var] = [float(v) for v in re.findall('\d+\.\d{5}', line)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:86: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:92: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:217: SyntaxWarning: invalid escape sequence '\(' | |
| model._tree = EvolTree (re.findall ('\(.*\);', ''.join(all_lines))[2]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:227: SyntaxWarning: invalid escape sequence '\d' | |
| line = list(map (float, re.findall ('\d\.\d+', all_lines [i+j+1]))) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:240: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(-\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:245: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(nan).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:252: SyntaxWarning: invalid escape sequence '\d' | |
| labels = re.findall ('\d+\.\.\d+', line + ' ') | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:258: SyntaxWarning: invalid escape sequence '\d' | |
| model.stats ['kappa'] = float (re.sub ('.*(\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:264: SyntaxWarning: invalid escape sequence '\d' | |
| if not re.match (' +\d+\.\.\d+ +\d+\.\d+ ', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:265: SyntaxWarning: invalid escape sequence '\d' | |
| if re.match (' +( +\d+\.\d+){8}', all_lines [i+1]): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:468: SyntaxWarning: invalid escape sequence '\[' | |
| nwk += sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:471: SyntaxWarning: invalid escape sequence '\[' | |
| nwk = sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/tools/utils.py:28: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:367: SyntaxWarning: invalid escape sequence '\.' | |
| if sub('\..*', '', model) in AVAIL: | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:368: SyntaxWarning: invalid escape sequence '\.' | |
| return model, AVAIL [sub('\..*', '', model)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:75: SyntaxWarning: invalid escape sequence '\w' | |
| ID_PATTERN = re.compile("^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:153: SyntaxWarning: invalid escape sequence '\w' | |
| m = re.search("Phy(\w{7})_[\w\d]+", name) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:500: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:756: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_GEN_REGEXP_FILTER = "^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:757: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:758: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_INT_REGEXP_FILTER = "^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_BioPhyloTree.py:16: UserWarning: ImportWarning: Bio.Phylo.TreeConstruction import failed; inserting a no-op mock for BioPhyloTree. | |
| warnings.warn( | |
| 2025-01-02 11:31:06 INFO beginning surface_unpack_reconstruct | |
| 2025-01-02 11:31:06 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 30Gi 2.9Ti 6.7Mi 49Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 30Gi 2.9Ti | |
| 2025-01-02 11:31:07 INFO packed df: 100 rows | |
| shape: (5, 11) | |
| ┌─────────┬────────┬───────┬────────┬────────┬────────┬────────┬────────┬────────┬────────┬────────┐ | |
| │ data_he ┆ is_ext ┆ layer ┆ positi ┆ genome ┆ dstrea ┆ dstrea ┆ dstrea ┆ dstrea ┆ dstrea ┆ dstrea │ | |
| │ x ┆ ant ┆ --- ┆ on ┆ Flavor ┆ m_algo ┆ m_stor ┆ m_stor ┆ m_T_bi ┆ m_T_bi ┆ m_S │ | |
| │ --- ┆ --- ┆ u32 ┆ --- ┆ --- ┆ --- ┆ age_bi ┆ age_bi ┆ toffse ┆ twidth ┆ --- │ | |
| │ str ┆ bool ┆ ┆ u32 ┆ cat ┆ cat ┆ toffse ┆ twidth ┆ t ┆ --- ┆ u8 │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ t ┆ --- ┆ --- ┆ u8 ┆ │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ --- ┆ u8 ┆ u8 ┆ ┆ │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ ┆ │ | |
| ╞═════════╪════════╪═══════╪════════╪════════╪════════╪════════╪════════╪════════╪════════╪════════╡ | |
| │ bab50ec ┆ false ┆ 0 ┆ 0 ┆ genome ┆ dstrea ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ e000000 ┆ ┆ ┆ ┆ _purif ┆ m.tilt ┆ ┆ ┆ ┆ ┆ │ | |
| │ 4ce4482 ┆ ┆ ┆ ┆ yingon ┆ ed_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ ecec9fb ┆ ┆ ┆ ┆ ly ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ 7b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 0000000 ┆ false ┆ 0 ┆ 1 ┆ genome ┆ dstrea ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 0000000 ┆ ┆ ┆ ┆ _purif ┆ m.tilt ┆ ┆ ┆ ┆ ┆ │ | |
| │ 4c08df4 ┆ ┆ ┆ ┆ yingon ┆ ed_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ 565a7bd ┆ ┆ ┆ ┆ ly ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ d8… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9acade ┆ false ┆ 0 ┆ 2 ┆ genome ┆ dstrea ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ d000000 ┆ ┆ ┆ ┆ _purif ┆ m.tilt ┆ ┆ ┆ ┆ ┆ │ | |
| │ 4c8fb69 ┆ ┆ ┆ ┆ yingon ┆ ed_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ 0e35e8a ┆ ┆ ┆ ┆ ly ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ 3b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9bbbc8 ┆ false ┆ 0 ┆ 3 ┆ genome ┆ dstrea ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 3000000 ┆ ┆ ┆ ┆ _purif ┆ m.tilt ┆ ┆ ┆ ┆ ┆ │ | |
| │ 4c56fa0 ┆ ┆ ┆ ┆ yingon ┆ ed_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ 1e047a8 ┆ ┆ ┆ ┆ ly ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ 3b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9b173e ┆ false ┆ 0 ┆ 4 ┆ genome ┆ dstrea ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ d000000 ┆ ┆ ┆ ┆ _purif ┆ m.tilt ┆ ┆ ┆ ┆ ┆ │ | |
| │ 4ca0e9a ┆ ┆ ┆ ┆ yingon ┆ ed_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ cecb13f ┆ ┆ ┆ ┆ ly ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ 3e… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └─────────┴────────┴───────┴────────┴────────┴────────┴────────┴────────┴────────┴────────┴────────┘ | |
| 2025-01-02 11:31:07 INFO extracting metadata.. | |
| 2025-01-02 11:31:07 INFO - dstream storage bitwidth: 64 | |
| 2025-01-02 11:31:07 INFO - dstream S: 64 | |
| 2025-01-02 11:31:07 INFO - differentia bitwidth: 1 | |
| 2025-01-02 11:31:07 INFO begin explode_lookup_unpacked | |
| 2025-01-02 11:31:07 INFO - prepping data... | |
| 2025-01-02 11:31:07 INFO - calculating offsets... | |
| 2025-01-02 11:31:07 INFO - extracting T and storage_hex from data_hex... | |
| 2025-01-02 11:31:07 INFO - validating and filtering... | |
| 2025-01-02 11:31:07 INFO - finalizing result schema... | |
| 2025-01-02 11:31:07 INFO unpack_data_packed complete | |
| 2025-01-02 11:31:07 INFO exit log_seconds_elapsed for dstream.dataframe.unpack_data_packed | |
| !!! {"dstream.dataframe.unpack_data_packed": 0.10948944091796875} | |
| 2025-01-02 11:31:07 INFO unpacked df: 100 rows | |
| shape: (5, 9) | |
| ┌───────────┬───────────┬───────┬──────────┬───────────┬──────────┬──────────┬──────────┬──────────┐ | |
| │ dstream_d ┆ is_extant ┆ layer ┆ position ┆ genomeFla ┆ dstream_ ┆ dstream_ ┆ dstream_ ┆ dstream_ │ | |
| │ ata_id ┆ --- ┆ --- ┆ --- ┆ vor ┆ algo ┆ S ┆ storage_ ┆ T │ | |
| │ --- ┆ bool ┆ u32 ┆ u32 ┆ --- ┆ --- ┆ --- ┆ hex ┆ --- │ | |
| │ u64 ┆ ┆ ┆ ┆ cat ┆ cat ┆ u32 ┆ --- ┆ u64 │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ ┆ str ┆ │ | |
| ╞═══════════╪═══════════╪═══════╪══════════╪═══════════╪══════════╪══════════╪══════════╪══════════╡ | |
| │ 0 ┆ false ┆ 0 ┆ 0 ┆ genome_pu ┆ dstream. ┆ 64 ┆ e4482ece ┆ 76 │ | |
| │ ┆ ┆ ┆ ┆ rifyingon ┆ tilted_a ┆ ┆ c9fb7b2b ┆ │ | |
| │ ┆ ┆ ┆ ┆ ly ┆ lgo ┆ ┆ ┆ │ | |
| │ 1 ┆ false ┆ 0 ┆ 1 ┆ genome_pu ┆ dstream. ┆ 64 ┆ 08df4565 ┆ 76 │ | |
| │ ┆ ┆ ┆ ┆ rifyingon ┆ tilted_a ┆ ┆ a7bdd870 ┆ │ | |
| │ ┆ ┆ ┆ ┆ ly ┆ lgo ┆ ┆ ┆ │ | |
| │ 2 ┆ false ┆ 0 ┆ 2 ┆ genome_pu ┆ dstream. ┆ 64 ┆ 8fb690e3 ┆ 76 │ | |
| │ ┆ ┆ ┆ ┆ rifyingon ┆ tilted_a ┆ ┆ 5e8a3b22 ┆ │ | |
| │ ┆ ┆ ┆ ┆ ly ┆ lgo ┆ ┆ ┆ │ | |
| │ 3 ┆ false ┆ 0 ┆ 3 ┆ genome_pu ┆ dstream. ┆ 64 ┆ 56fa01e0 ┆ 76 │ | |
| │ ┆ ┆ ┆ ┆ rifyingon ┆ tilted_a ┆ ┆ 47a83b6f ┆ │ | |
| │ ┆ ┆ ┆ ┆ ly ┆ lgo ┆ ┆ ┆ │ | |
| │ 4 ┆ false ┆ 0 ┆ 4 ┆ genome_pu ┆ dstream. ┆ 64 ┆ a0e9acec ┆ 76 │ | |
| │ ┆ ┆ ┆ ┆ rifyingon ┆ tilted_a ┆ ┆ b13f3e19 ┆ │ | |
| │ ┆ ┆ ┆ ┆ ly ┆ lgo ┆ ┆ ┆ │ | |
| └───────────┴───────────┴───────┴──────────┴───────────┴──────────┴──────────┴──────────┴──────────┘ | |
| 2025-01-02 11:31:07 INFO building tree searchtable chunkwise... | |
| 2025-01-02 11:31:07 INFO len(df)=100 exploded_slice_size=1000000 num_slices=1 | |
| 2025-01-02 11:31:07 INFO incorporating slice 1/1... | |
| /usr/local/lib/python3.12/dist-packages/downstream/dataframe/_impl/_check_downstream_version.py:29: UserWarning: Dataframe downstream_version column not provided | |
| warnings.warn( | |
| 2025-01-02 11:31:07 INFO begin explode_lookup_unpacked | |
| 2025-01-02 11:31:07 INFO - prepping data... | |
| 2025-01-02 11:31:07 INFO - exploding dataframe... | |
| 2025-01-02 11:31:07 INFO - unpacking hex strings... | |
| 2025-01-02 11:31:07 INFO - looking up ingest times... | |
| 2025-01-02 11:31:14 INFO - validating and filtering... | |
| 2025-01-02 11:31:14 INFO - finalizing result schema | |
| 2025-01-02 11:31:14 INFO explode_lookup_unpacked complete | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for dstream.dataframe.explode_lookup_unpacked (1/1) | |
| !!! {"dstream.dataframe.explode_lookup_unpacked (1/1)": 7.182736396789551} | |
| 2025-01-02 11:31:14 INFO exploded df: 6400 rows | |
| shape: (5, 4) | |
| ┌─────────────────┬───────────┬──────────────┬───────────────┐ | |
| │ dstream_data_id ┆ dstream_T ┆ dstream_Tbar ┆ dstream_value │ | |
| │ --- ┆ --- ┆ --- ┆ --- │ | |
| │ u64 ┆ u64 ┆ u64 ┆ u64 │ | |
| ╞═════════════════╪═══════════╪══════════════╪═══════════════╡ | |
| │ 53 ┆ 72 ┆ 3 ┆ 0 │ | |
| │ 53 ┆ 72 ┆ 7 ┆ 0 │ | |
| │ 53 ┆ 72 ┆ 8 ┆ 1 │ | |
| │ 53 ┆ 72 ┆ 9 ┆ 1 │ | |
| │ 53 ┆ 72 ┆ 10 ┆ 1 │ | |
| └─────────────────┴───────────┴──────────────┴───────────────┘ | |
| 2025-01-02 11:31:14 INFO exploded searchtable cpp begin | |
| 0%| | 0/100 [00:00<?, ?it/s] | |
| 100%|██████████| 100/100 [00:00<00:00, 182758.34it/s] | |
| 2025-01-02 11:31:14 INFO exploded searchtable cpp extension complete, num records is 5939 | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for extend_tree_searchtable_cpp_from_exploded (1/1) | |
| !!! {"extend_tree_searchtable_cpp_from_exploded (1/1)": 0.006011486053466797} | |
| 2025-01-02 11:31:14 INFO collapsing dropped unifurcations removed 6 of 5939 records, 5933 remain | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for collapse_dropped_unifurcations (1/1) | |
| !!! {"collapse_dropped_unifurcations (1/1)": 0.0004725456237792969} | |
| 2025-01-02 11:31:14 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 30Gi 2.9Ti 6.7Mi 49Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 30Gi 2.9Ti | |
| 2025-01-02 11:31:14 INFO converting records to dict... | |
| 2025-01-02 11:31:14 INFO converting dict to dataframe... | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for _construct_result_dataframe | |
| !!! {"_construct_result_dataframe": 0.0015783309936523438} | |
| 2025-01-02 11:31:14 INFO converted df: 5933 rows | |
| shape: (5, 6) | |
| ┌─────────────────────┬─────┬─────────────┬─────────────┬─────────────────────────────┬───────────┐ | |
| │ dstream_data_id ┆ id ┆ ancestor_id ┆ hstrat_rank ┆ hstrat_differentia_bitwidth ┆ dstream_S │ | |
| │ --- ┆ --- ┆ --- ┆ --- ┆ --- ┆ --- │ | |
| │ u64 ┆ u64 ┆ u64 ┆ u64 ┆ u32 ┆ u32 │ | |
| ╞═════════════════════╪═════╪═════════════╪═════════════╪═════════════════════════════╪═══════════╡ | |
| │ 9223372036854775807 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 1 ┆ 0 ┆ 3 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 2 ┆ 1 ┆ 7 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 3 ┆ 2 ┆ 9 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 4 ┆ 3 ┆ 10 ┆ 1 ┆ 64 │ | |
| └─────────────────────┴─────┴─────────────┴─────────────┴─────────────────────────────┴───────────┘ | |
| 2025-01-02 11:31:14 INFO joining user-defined columns... | |
| 2025-01-02 11:31:14 INFO - 4 column to join | |
| 2025-01-02 11:31:14 INFO - joining columns: ['layer', 'position', 'genomeFlavor', 'is_extant'] | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for _join_user_defined_columns | |
| !!! {"_join_user_defined_columns": 0.020750999450683594} | |
| 2025-01-02 11:31:14 INFO surface_unpack_reconstruct complete | |
| 2025-01-02 11:31:14 INFO reconstruction df: 5933 rows | |
| shape: (5, 10) | |
| ┌──────────┬─────┬──────────┬──────────┬──────────┬──────────┬─────────┬───────┬─────────┬─────────┐ | |
| │ dstream_ ┆ id ┆ ancestor ┆ hstrat_r ┆ hstrat_d ┆ dstream_ ┆ is_exta ┆ layer ┆ positio ┆ genomeF │ | |
| │ data_id ┆ --- ┆ _id ┆ ank ┆ ifferent ┆ S ┆ nt ┆ --- ┆ n ┆ lavor │ | |
| │ --- ┆ u64 ┆ --- ┆ --- ┆ ia_bitwi ┆ --- ┆ --- ┆ u32 ┆ --- ┆ --- │ | |
| │ u64 ┆ ┆ u64 ┆ u64 ┆ dth ┆ u32 ┆ bool ┆ ┆ u32 ┆ cat │ | |
| │ ┆ ┆ ┆ ┆ --- ┆ ┆ ┆ ┆ ┆ │ | |
| │ ┆ ┆ ┆ ┆ u32 ┆ ┆ ┆ ┆ ┆ │ | |
| ╞══════════╪═════╪══════════╪══════════╪══════════╪══════════╪═════════╪═══════╪═════════╪═════════╡ | |
| │ 92233720 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 ┆ null ┆ null ┆ null ┆ null │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720 ┆ 1 ┆ 0 ┆ 3 ┆ 1 ┆ 64 ┆ null ┆ null ┆ null ┆ null │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720 ┆ 2 ┆ 1 ┆ 7 ┆ 1 ┆ 64 ┆ null ┆ null ┆ null ┆ null │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720 ┆ 3 ┆ 2 ┆ 9 ┆ 1 ┆ 64 ┆ null ┆ null ┆ null ┆ null │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720 ┆ 4 ┆ 3 ┆ 10 ┆ 1 ┆ 64 ┆ null ┆ null ┆ null ┆ null │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └──────────┴─────┴──────────┴──────────┴──────────┴──────────┴─────────┴───────┴─────────┴─────────┘ | |
| 2025-01-02 11:31:14 INFO exit log_seconds_elapsed for hstrat.dataframe.surface_unpack_reconstruct | |
| !!! {"hstrat.dataframe.surface_unpack_reconstruct": 8.056176662445068} | |
| do reconstruction | |
| INFO: Using cached SIF image | |
| /usr/local/lib/python3.12/dist-packages/alifedata_phyloinformatics_convert/_impl/phytrack_Systematcs.py:7: UserWarning: ImportWarning: phylotrackpy.Systematics import failed; inserting a no-op mock for Systematics. This is likely because phylotrackpy is not installed. | |
| warnings.warn( | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:365: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:436: SyntaxWarning: invalid escape sequence '\-' | |
| """Prunes the topology of a node to conserve only the selected list of leaf | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:1508: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:51: SyntaxWarning: invalid escape sequence '\[' | |
| _ILEGAL_NEWICK_CHARS = ":;(),\[\]\t\n\r=" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:54: SyntaxWarning: invalid escape sequence '\[' | |
| _NHX_RE = "\[&&NHX:[^\]]*\]" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:55: SyntaxWarning: invalid escape sequence '\s' | |
| _FLOAT_RE = "\s*[+-]?\d+\.?\d*(?:[eE][-+]?\d+)?\s*" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:402: SyntaxWarning: invalid escape sequence '\s' | |
| matcher_str= '^\s*%s\s*%s\s*(%s)?\s*$' % (FIRST_MATCH, SECOND_MATCH, _NHX_RE) | |
| /usr/local/lib/python3.12/dist-packages/ete3/utils.py:82: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:76: SyntaxWarning: invalid escape sequence '\s' | |
| m = re.match("^\s*(\d+)\s+(\d+)",line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:108: SyntaxWarning: invalid escape sequence '\s' | |
| SG.id2seq[id_counter] += re.sub("\s","", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:123: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s","",m.groups()[1]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:138: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s", "", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:132: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])?(\d+)([^0-9])?") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:188: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])(\d+)([^0-9])") | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:74: SyntaxWarning: invalid escape sequence '\(' | |
| k = int(re.sub ('.* \(K=([0-9]+)\)\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:78: SyntaxWarning: invalid escape sequence '\d' | |
| re.match ('^[a-z]+.*(\d+\.\d{5} *){'+ str(k) +'}', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:82: SyntaxWarning: invalid escape sequence '\d' | |
| classes[var] = [float(v) for v in re.findall('\d+\.\d{5}', line)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:86: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:92: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:217: SyntaxWarning: invalid escape sequence '\(' | |
| model._tree = EvolTree (re.findall ('\(.*\);', ''.join(all_lines))[2]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:227: SyntaxWarning: invalid escape sequence '\d' | |
| line = list(map (float, re.findall ('\d\.\d+', all_lines [i+j+1]))) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:240: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(-\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:245: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(nan).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:252: SyntaxWarning: invalid escape sequence '\d' | |
| labels = re.findall ('\d+\.\.\d+', line + ' ') | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:258: SyntaxWarning: invalid escape sequence '\d' | |
| model.stats ['kappa'] = float (re.sub ('.*(\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:264: SyntaxWarning: invalid escape sequence '\d' | |
| if not re.match (' +\d+\.\.\d+ +\d+\.\d+ ', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:265: SyntaxWarning: invalid escape sequence '\d' | |
| if re.match (' +( +\d+\.\d+){8}', all_lines [i+1]): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:468: SyntaxWarning: invalid escape sequence '\[' | |
| nwk += sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:471: SyntaxWarning: invalid escape sequence '\[' | |
| nwk = sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/tools/utils.py:28: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:367: SyntaxWarning: invalid escape sequence '\.' | |
| if sub('\..*', '', model) in AVAIL: | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:368: SyntaxWarning: invalid escape sequence '\.' | |
| return model, AVAIL [sub('\..*', '', model)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:75: SyntaxWarning: invalid escape sequence '\w' | |
| ID_PATTERN = re.compile("^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:153: SyntaxWarning: invalid escape sequence '\w' | |
| m = re.search("Phy(\w{7})_[\w\d]+", name) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:500: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:756: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_GEN_REGEXP_FILTER = "^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:757: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:758: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_INT_REGEXP_FILTER = "^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_BioPhyloTree.py:16: UserWarning: ImportWarning: Bio.Phylo.TreeConstruction import failed; inserting a no-op mock for BioPhyloTree. | |
| warnings.warn( | |
| 2025-01-02 11:31:29 INFO beginning surface_unpack_reconstruct | |
| 2025-01-02 11:31:29 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 30Gi 2.9Ti 6.7Mi 49Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 30Gi 2.9Ti | |
| 2025-01-02 11:31:29 INFO packed df: 100000000 rows | |
| shape: (5, 9) | |
| ┌───────────┬───────┬──────────┬───────────┬───────────┬──────────┬──────────┬──────────┬──────────┐ | |
| │ data_hex ┆ layer ┆ position ┆ dstream_a ┆ dstream_s ┆ dstream_ ┆ dstream_ ┆ dstream_ ┆ dstream_ │ | |
| │ --- ┆ --- ┆ --- ┆ lgo ┆ torage_bi ┆ storage_ ┆ T_bitoff ┆ T_bitwid ┆ S │ | |
| │ str ┆ u32 ┆ u32 ┆ --- ┆ toffset ┆ bitwidth ┆ set ┆ th ┆ --- │ | |
| │ ┆ ┆ ┆ cat ┆ --- ┆ --- ┆ --- ┆ --- ┆ u8 │ | |
| │ ┆ ┆ ┆ ┆ u8 ┆ u8 ┆ u8 ┆ u8 ┆ │ | |
| ╞═══════════╪═══════╪══════════╪═══════════╪═══════════╪══════════╪══════════╪══════════╪══════════╡ | |
| │ bab50ece0 ┆ 0 ┆ 0 ┆ dstream.t ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 000004ce4 ┆ ┆ ┆ ilted_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ 482ecec9f ┆ ┆ ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ b7b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 000000000 ┆ 0 ┆ 1 ┆ dstream.t ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 000004c08 ┆ ┆ ┆ ilted_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ df4565a7b ┆ ┆ ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ dd8… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9acaded0 ┆ 0 ┆ 2 ┆ dstream.t ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 000004c8f ┆ ┆ ┆ ilted_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ b690e35e8 ┆ ┆ ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ a3b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9bbbc830 ┆ 0 ┆ 3 ┆ dstream.t ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 000004c56 ┆ ┆ ┆ ilted_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ fa01e047a ┆ ┆ ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ 83b… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ b9b173ed0 ┆ 0 ┆ 4 ┆ dstream.t ┆ 64 ┆ 64 ┆ 32 ┆ 32 ┆ 64 │ | |
| │ 000004ca0 ┆ ┆ ┆ ilted_alg ┆ ┆ ┆ ┆ ┆ │ | |
| │ e9acecb13 ┆ ┆ ┆ o ┆ ┆ ┆ ┆ ┆ │ | |
| │ f3e… ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └───────────┴───────┴──────────┴───────────┴───────────┴──────────┴──────────┴──────────┴──────────┘ | |
| 2025-01-02 11:31:29 INFO extracting metadata.. | |
| 2025-01-02 11:31:36 INFO - dstream storage bitwidth: 64 | |
| 2025-01-02 11:31:41 INFO - dstream S: 64 | |
| 2025-01-02 11:31:41 INFO - differentia bitwidth: 1 | |
| 2025-01-02 11:31:41 INFO begin explode_lookup_unpacked | |
| 2025-01-02 11:31:41 INFO - prepping data... | |
| 2025-01-02 11:31:41 INFO - calculating offsets... | |
| 2025-01-02 11:31:43 INFO - extracting T and storage_hex from data_hex... | |
| 2025-01-02 11:31:52 INFO - validating and filtering... | |
| 2025-01-02 11:31:52 INFO - finalizing result schema... | |
| 2025-01-02 11:31:53 INFO unpack_data_packed complete | |
| 2025-01-02 11:31:53 INFO exit log_seconds_elapsed for dstream.dataframe.unpack_data_packed | |
| !!! {"dstream.dataframe.unpack_data_packed": 11.450751781463623} | |
| 2025-01-02 11:31:53 INFO unpacked df: 100000000 rows | |
| shape: (5, 7) | |
| ┌─────────────────┬───────┬──────────┬──────────────────┬───────────┬──────────────────┬───────────┐ | |
| │ dstream_data_id ┆ layer ┆ position ┆ dstream_algo ┆ dstream_S ┆ dstream_storage_ ┆ dstream_T │ | |
| │ --- ┆ --- ┆ --- ┆ --- ┆ --- ┆ hex ┆ --- │ | |
| │ u64 ┆ u32 ┆ u32 ┆ cat ┆ u32 ┆ --- ┆ u64 │ | |
| │ ┆ ┆ ┆ ┆ ┆ str ┆ │ | |
| ╞═════════════════╪═══════╪══════════╪══════════════════╪═══════════╪══════════════════╪═══════════╡ | |
| │ 0 ┆ 0 ┆ 0 ┆ dstream.tilted_a ┆ 64 ┆ e4482ecec9fb7b2b ┆ 76 │ | |
| │ ┆ ┆ ┆ lgo ┆ ┆ ┆ │ | |
| │ 1 ┆ 0 ┆ 1 ┆ dstream.tilted_a ┆ 64 ┆ 08df4565a7bdd870 ┆ 76 │ | |
| │ ┆ ┆ ┆ lgo ┆ ┆ ┆ │ | |
| │ 2 ┆ 0 ┆ 2 ┆ dstream.tilted_a ┆ 64 ┆ 8fb690e35e8a3b22 ┆ 76 │ | |
| │ ┆ ┆ ┆ lgo ┆ ┆ ┆ │ | |
| │ 3 ┆ 0 ┆ 3 ┆ dstream.tilted_a ┆ 64 ┆ 56fa01e047a83b6f ┆ 76 │ | |
| │ ┆ ┆ ┆ lgo ┆ ┆ ┆ │ | |
| │ 4 ┆ 0 ┆ 4 ┆ dstream.tilted_a ┆ 64 ┆ a0e9acecb13f3e19 ┆ 76 │ | |
| │ ┆ ┆ ┆ lgo ┆ ┆ ┆ │ | |
| └─────────────────┴───────┴──────────┴──────────────────┴───────────┴──────────────────┴───────────┘ | |
| 2025-01-02 11:31:53 INFO building tree searchtable chunkwise... | |
| 2025-01-02 11:31:53 INFO len(df)=100000000 exploded_slice_size=50000000 num_slices=2 | |
| 2025-01-02 11:31:53 INFO incorporating slice 1/2... | |
| /usr/local/lib/python3.12/dist-packages/downstream/dataframe/_impl/_check_downstream_version.py:29: UserWarning: Dataframe downstream_version column not provided | |
| warnings.warn( | |
| 2025-01-02 11:31:56 INFO begin explode_lookup_unpacked | |
| 2025-01-02 11:31:56 INFO - prepping data... | |
| 2025-01-02 11:32:02 INFO - exploding dataframe... | |
| 2025-01-02 11:32:59 INFO - unpacking hex strings... | |
| 2025-01-02 11:33:18 INFO - looking up ingest times... | |
| 2025-01-02 11:33:34 INFO - validating and filtering... | |
| 2025-01-02 11:33:34 INFO - finalizing result schema | |
| 2025-01-02 11:33:34 INFO explode_lookup_unpacked complete | |
| 2025-01-02 11:47:40 INFO exit log_seconds_elapsed for dstream.dataframe.explode_lookup_unpacked (1/2) | |
| !!! {"dstream.dataframe.explode_lookup_unpacked (1/2)": 946.7714884281158} | |
| 2025-01-02 11:47:40 INFO exploded df: 3200000000 rows | |
| shape: (5, 4) | |
| ┌─────────────────┬───────────┬──────────────┬───────────────┐ | |
| │ dstream_data_id ┆ dstream_T ┆ dstream_Tbar ┆ dstream_value │ | |
| │ --- ┆ --- ┆ --- ┆ --- │ | |
| │ u64 ┆ u64 ┆ u64 ┆ u64 │ | |
| ╞═════════════════╪═══════════╪══════════════╪═══════════════╡ | |
| │ 14955 ┆ 66 ┆ 2 ┆ 0 │ | |
| │ 14955 ┆ 66 ┆ 3 ┆ 0 │ | |
| │ 14955 ┆ 66 ┆ 4 ┆ 0 │ | |
| │ 14955 ┆ 66 ┆ 5 ┆ 0 │ | |
| │ 14955 ┆ 66 ┆ 6 ┆ 0 │ | |
| └─────────────────┴───────────┴──────────────┴───────────────┘ | |
| 2025-01-02 11:47:40 INFO exploded searchtable cpp begin | |
| 0%| | 0/50000000 [00:00<?, ?it/s] | |
| 0%| | 19135/50000000 [00:00<04:21, 191345.62it/s] | |
| 0%| | 38270/50000000 [00:00<04:32, 183369.95it/s] | |
| 0%| | 56773/50000000 [00:00<04:31, 184107.99it/s] | |
| 0%| | 75198/50000000 [00:00<04:33, 182258.76it/s] | |
| 0%| | 93433/50000000 [00:00<04:42, 176388.96it/s] | |
| 0%| | 111102/50000000 [00:00<04:44, 175450.35it/s] | |
| 0%| | 128665/50000000 [00:00<04:51, 171128.47it/s] | |
| 0%| | 145801/50000000 [00:00<04:54, 169570.45it/s] | |
| 0%| | 162772/50000000 [00:00<05:03, 164318.71it/s] | |
| 0%| | 179479/50000000 [00:01<05:01, 165131.66it/s] | |
| 0%| | 196016/50000000 [00:01<05:04, 163480.63it/s] | |
| 0%| | 212683/50000000 [00:01<05:02, 164423.09it/s] | |
| 0%| | 229211/50000000 [00:01<05:02, 164675.34it/s] | |
| 0%| | 245689/50000000 [00:01<05:07, 161967.89it/s] | |
| 1%| | 261900/50000000 [00:01<05:10, 160214.50it/s] | |
| 1%| | 277932/50000000 [00:01<05:15, 157546.07it/s] | |
| 1%| | 293733/50000000 [00:01<05:15, 157679.10it/s] | |
| 1%| | 309510/50000000 [00:01<05:22, 154281.18it/s] | |
| 1%| | 324974/50000000 [00:01<05:21, 154375.89it/s] | |
| 1%| | 340481/50000000 [00:02<05:21, 154577.57it/s] | |
| 1%| | 355948/50000000 [00:02<05:26, 152234.77it/s] | |
| 1%| | 371867/50000000 [00:02<05:21, 154278.43it/s] | |
| 1%| | 387307/50000000 [00:02<05:23, 153475.40it/s] | |
| 1%| | 403312/50000000 [00:02<05:19, 155410.48it/s] | |
| 1%| | 418862/50000000 [00:02<05:23, 153411.25it/s] | |
| 1%| | 434737/50000000 [00:02<05:19, 154985.39it/s] | |
| 1%| | 450251/50000000 [00:02<05:24, 152849.86it/s] | |
| 1%| | 466015/50000000 [00:02<05:21, 154259.14it/s] | |
| 1%| | 481618/50000000 [00:02<05:19, 154781.93it/s] | |
| 1%| | 497105/50000000 [00:03<05:24, 152344.86it/s] | |
| 1%| | 512630/50000000 [00:03<05:23, 153194.77it/s] | |
| 1%| | 527960/50000000 [00:03<05:27, 151005.94it/s] | |
| 1%| | 543512/50000000 [00:03<05:24, 152334.41it/s] | |
| 1%| | 558757/50000000 [00:03<05:29, 150197.94it/s] | |
| 1%| | 574270/50000000 [00:03<05:25, 151648.51it/s] | |
| 1%| | 589634/50000000 [00:03<05:24, 152237.48it/s] | |
| 1%| | 604867/50000000 [00:03<05:29, 149985.17it/s] | |
| 1%| | 620270/50000000 [00:03<05:26, 151177.41it/s] | |
| 1%|▏ | 635398/50000000 [00:04<05:32, 148535.54it/s] | |
| 1%|▏ | 650741/50000000 [00:04<05:29, 149971.71it/s] | |
| 1%|▏ | 665752/50000000 [00:04<05:31, 148603.11it/s] | |
| 1%|▏ | 681097/50000000 [00:04<05:28, 150030.55it/s] | |
| 1%|▏ | 696363/50000000 [00:04<05:26, 150809.93it/s] | |
| 1%|▏ | 711452/50000000 [00:04<05:30, 148918.61it/s] | |
| 1%|▏ | 726660/50000000 [00:04<05:28, 149851.28it/s] | |
| 1%|▏ | 741654/50000000 [00:04<05:34, 147406.51it/s] | |
| 2%|▏ | 756407/50000000 [00:06<32:17, 25415.49it/s] | |
| 2%|▏ | 775867/50000000 [00:06<22:16, 36836.88it/s] | |
| 2%|▏ | 795276/50000000 [00:06<16:10, 50677.41it/s] | |
| 2%|▏ | 814606/50000000 [00:06<12:18, 66607.61it/s] | |
| 2%|▏ | 832946/50000000 [00:06<09:54, 82676.85it/s] | |
| 2%|▏ | 852104/50000000 [00:06<08:08, 100565.28it/s] | |
| 2%|▏ | 869829/50000000 [00:07<07:06, 115140.51it/s] | |
| 2%|▏ | 888465/50000000 [00:07<06:16, 130349.29it/s] | |
| 2%|▏ | 906843/50000000 [00:07<05:43, 142838.06it/s] | |
| 2%|▏ | 924915/50000000 [00:07<05:25, 150831.35it/s] | |
| 2%|▏ | 942782/50000000 [00:07<05:11, 157736.70it/s] | |
| 2%|▏ | 960601/50000000 [00:07<05:05, 160577.78it/s] | |
| 2%|▏ | 978346/50000000 [00:07<04:56, 165236.17it/s] | |
| 2%|▏ | 995924/50000000 [00:07<04:55, 165804.32it/s] | |
| 2%|▏ | 1013545/50000000 [00:07<04:50, 168767.47it/s] | |
| 2%|▏ | 1030955/50000000 [00:07<04:52, 167676.70it/s] | |
| 2%|▏ | 1048438/50000000 [00:08<04:48, 169739.73it/s] | |
| 2%|▏ | 1065681/50000000 [00:08<04:47, 170500.78it/s] | |
| 2%|▏ | 1082922/50000000 [00:08<04:52, 167404.49it/s] | |
| 2%|▏ | 1100133/50000000 [00:08<04:49, 168775.75it/s] | |
| 2%|▏ | 1117115/50000000 [00:08<04:54, 166166.68it/s] | |
| 2%|▏ | 1134171/50000000 [00:08<04:51, 167450.33it/s] | |
| 2%|▏ | 1150975/50000000 [00:08<04:55, 165066.77it/s] | |
| 2%|▏ | 1167925/50000000 [00:08<04:53, 166365.45it/s] | |
| 2%|▏ | 1184875/50000000 [00:08<04:51, 167280.77it/s] | |
| 2%|▏ | 1201629/50000000 [00:08<04:53, 166514.53it/s] | |
| 2%|▏ | 1219557/50000000 [00:09<04:46, 170294.28it/s] | |
| 2%|▏ | 1236604/50000000 [00:09<04:48, 169251.07it/s] | |
| 3%|▎ | 1254379/50000000 [00:09<04:43, 171773.23it/s] | |
| 3%|▎ | 1271568/50000000 [00:09<04:47, 169459.80it/s] | |
| 3%|▎ | 1289076/50000000 [00:09<04:44, 171120.60it/s] | |
| 3%|▎ | 1306466/50000000 [00:09<04:43, 171945.39it/s] | |
| 3%|▎ | 1323670/50000000 [00:09<04:49, 168271.57it/s] | |
| 3%|▎ | 1340783/50000000 [00:09<04:47, 169109.34it/s] | |
| 3%|▎ | 1357711/50000000 [00:09<04:53, 165996.27it/s] | |
| 3%|▎ | 1374732/50000000 [00:10<04:50, 167230.66it/s] | |
| 3%|▎ | 1391473/50000000 [00:10<04:54, 165177.25it/s] | |
| 3%|▎ | 1408527/50000000 [00:10<04:51, 166752.27it/s] | |
| 3%|▎ | 1425216/50000000 [00:10<04:52, 166275.00it/s] | |
| 3%|▎ | 1441853/50000000 [00:10<04:54, 164658.99it/s] | |
| 3%|▎ | 1459183/50000000 [00:10<04:50, 167210.06it/s] | |
| 3%|▎ | 1475914/50000000 [00:10<04:52, 166100.49it/s] | |
| 3%|▎ | 1491000/50000000 [10:41<04:52, 166100.49it/s] | |
| 3%|▎ | 1491001/50000000 [10:41<156:00:50, 86.37it/s] | |
| 3%|▎ | 1491005/50000000 [14:00<156:00:50, 86.37it/s] | |
| 3%|▎ | 1491006/50000000 [14:00<226:12:43, 59.57it/s] | |
| 3%|▎ | 1512500/50000000 [14:00<125:21:14, 107.45it/s] | |
| 3%|▎ | 1534900/50000000 [14:01<75:20:24, 178.69it/s] | |
| 3%|▎ | 1556364/50000000 [14:01<48:43:53, 276.14it/s] | |
| 3%|▎ | 1577419/50000000 [14:01<32:36:17, 412.54it/s] | |
| 3%|▎ | 1597738/50000000 [14:01<22:23:53, 600.28it/s] | |
| 3%|▎ | 1618122/50000000 [14:01<15:28:12, 868.73it/s] | |
| 3%|▎ | 1638458/50000000 [14:01<10:44:46, 1250.09it/s] | |
| 3%|▎ | 1658740/50000000 [14:01<7:29:54, 1790.79it/s] | |
| 3%|▎ | 1678803/50000000 [14:01<5:15:53, 2549.49it/s] | |
| 3%|▎ | 1698560/50000000 [14:01<3:43:12, 3606.54it/s] | |
| 3%|▎ | 1718098/50000000 [14:01<2:38:24, 5079.96it/s] | |
| 3%|▎ | 1737515/50000000 [14:02<1:52:46, 7132.56it/s] | |
| 4%|▎ | 1756850/50000000 [14:02<1:20:36, 9974.54it/s] | |
| 4%|▎ | 1776083/50000000 [14:02<57:58, 13862.00it/s] | |
| 4%|▎ | 1795199/50000000 [14:02<42:06, 19076.34it/s] | |
| 4%|▎ | 1814100/50000000 [14:02<30:56, 25956.76it/s] | |
| 4%|▎ | 1832941/50000000 [14:02<23:03, 34823.05it/s] | |
| 4%|▎ | 1851734/50000000 [14:02<17:29, 45881.52it/s] | |
| 4%|▎ | 1870488/50000000 [14:02<13:33, 59154.50it/s] | |
| 4%|▍ | 1889233/50000000 [14:02<10:48, 74184.16it/s] | |
| 4%|▍ | 1907905/50000000 [14:02<08:54, 90038.88it/s] | |
| 4%|▍ | 1926424/50000000 [14:03<07:34, 105698.69it/s] | |
| 4%|▍ | 1944784/50000000 [14:03<06:37, 120756.57it/s] | |
| 4%|▍ | 1963142/50000000 [14:03<05:57, 134416.08it/s] | |
| 4%|▍ | 1981482/50000000 [14:03<05:29, 145892.48it/s] | |
| 4%|▍ | 1999801/50000000 [14:03<05:09, 155242.79it/s] | |
| 4%|▍ | 2018109/50000000 [14:03<04:55, 162351.96it/s] | |
| 4%|▍ | 2036382/50000000 [14:03<04:48, 166266.78it/s] | |
| 4%|▍ | 2054542/50000000 [14:03<04:41, 170549.94it/s] | |
| 4%|▍ | 2072920/50000000 [14:03<04:34, 174325.06it/s] | |
| 4%|▍ | 2091202/50000000 [14:03<04:31, 176781.75it/s] | |
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| 98%|█████████▊| 49215578/50000000 [28:52<00:03, 214326.39it/s] | |
| 98%|█████████▊| 49237050/50000000 [28:52<00:03, 214284.34it/s] | |
| 99%|█████████▊| 49259108/50000000 [28:52<00:03, 216144.51it/s] | |
| 99%|█████████▊| 49280745/50000000 [28:52<00:03, 213317.42it/s] | |
| 99%|█████████▊| 49302098/50000000 [28:53<00:03, 212754.63it/s] | |
| 99%|█████████▊| 49323388/50000000 [28:53<00:03, 212463.21it/s] | |
| 99%|█████████▊| 49344644/50000000 [28:53<00:03, 210251.46it/s] | |
| 99%|█████████▊| 49365780/50000000 [28:53<00:03, 210578.21it/s] | |
| 99%|█████████▉| 49386846/50000000 [28:53<00:02, 210250.79it/s] | |
| 99%|█████████▉| 49407877/50000000 [28:53<00:02, 209940.79it/s] | |
| 99%|█████████▉| 49428935/50000000 [28:53<00:02, 210124.98it/s] | |
| 99%|█████████▉| 49450103/50000000 [28:53<00:02, 210588.31it/s] | |
| 99%|█████████▉| 49471250/50000000 [28:53<00:02, 210849.85it/s] | |
| 99%|█████████▉| 49492337/50000000 [28:53<00:02, 209922.82it/s] | |
| 99%|█████████▉| 49513368/50000000 [28:54<00:02, 210038.32it/s] | |
| 99%|█████████▉| 49534374/50000000 [28:54<00:02, 209468.20it/s] | |
| 99%|█████████▉| 49555322/50000000 [28:54<00:02, 209288.01it/s] | |
| 99%|█████████▉| 49576252/50000000 [28:54<00:02, 207785.66it/s] | |
| 99%|█████████▉| 49597034/50000000 [28:54<00:01, 206349.36it/s] | |
| 99%|█████████▉| 49617672/50000000 [28:54<00:01, 205302.71it/s] | |
| 99%|█████████▉| 49638205/50000000 [28:54<00:01, 203311.35it/s] | |
| 99%|█████████▉| 49658541/50000000 [28:54<00:01, 202043.40it/s] | |
| 99%|█████████▉| 49678749/50000000 [28:54<00:01, 200220.08it/s] | |
| 99%|█████████▉| 49698775/50000000 [28:55<00:01, 197263.75it/s] | |
| 99%|█████████▉| 49718516/50000000 [28:55<00:01, 197305.89it/s] | |
| 99%|█████████▉| 49738423/50000000 [28:55<00:01, 197816.95it/s] | |
| 100%|█████████▉| 49758819/50000000 [28:55<00:01, 199636.69it/s] | |
| 100%|█████████▉| 49779029/50000000 [28:55<00:01, 200369.92it/s] | |
| 100%|█████████▉| 49799071/50000000 [28:55<00:01, 200216.28it/s] | |
| 100%|█████████▉| 49819382/50000000 [28:55<00:00, 201076.51it/s] | |
| 100%|█████████▉| 49839920/50000000 [28:55<00:00, 202353.11it/s] | |
| 100%|█████████▉| 49860684/50000000 [28:55<00:00, 203935.03it/s] | |
| 100%|█████████▉| 49881318/50000000 [28:55<00:00, 204653.57it/s] | |
| 100%|█████████▉| 49901935/50000000 [28:56<00:00, 205106.45it/s] | |
| 100%|█████████▉| 49923833/50000000 [28:56<00:00, 209252.54it/s] | |
| 100%|█████████▉| 49945667/50000000 [28:56<00:00, 211969.69it/s] | |
| 100%|█████████▉| 49948500/50000000 [29:24<00:00, 211969.69it/s] | |
| 100%|█████████▉| 49948501/50000000 [29:24<00:27, 1842.06it/s] | |
| 100%|█████████▉| 49948512/50000000 [29:26<00:31, 1644.17it/s] | |
| 100%|█████████▉| 49973182/50000000 [29:26<00:08, 3205.18it/s] | |
| 100%|█████████▉| 49996989/50000000 [29:26<00:00, 5323.20it/s] | |
| 100%|██████████| 50000000/50000000 [29:26<00:00, 28296.78it/s] | |
| 2025-01-02 12:17:17 INFO exploded searchtable cpp extension complete, num records is 1459846760 | |
| 2025-01-02 12:17:17 INFO exit log_seconds_elapsed for extend_tree_searchtable_cpp_from_exploded (1/2) | |
| !!! {"extend_tree_searchtable_cpp_from_exploded (1/2)": 1777.1853964328766} | |
| 2025-01-02 12:19:06 INFO collapsing dropped unifurcations removed 691950494 of 1459846760 records, 767896266 remain | |
| 2025-01-02 12:19:16 INFO exit log_seconds_elapsed for collapse_dropped_unifurcations (1/2) | |
| !!! {"collapse_dropped_unifurcations (1/2)": 118.72753882408142} | |
| 2025-01-02 12:19:16 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 180Gi 2.7Ti 6.7Mi 49Gi 2.8Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 180Gi 2.7Ti | |
| 2025-01-02 12:19:16 INFO incorporating slice 2/2... | |
| /usr/local/lib/python3.12/dist-packages/downstream/dataframe/_impl/_check_downstream_version.py:29: UserWarning: Dataframe downstream_version column not provided | |
| warnings.warn( | |
| 2025-01-02 12:19:18 INFO begin explode_lookup_unpacked | |
| 2025-01-02 12:19:18 INFO - prepping data... | |
| 2025-01-02 12:19:25 INFO - exploding dataframe... | |
| 2025-01-02 12:20:16 INFO - unpacking hex strings... | |
| 2025-01-02 12:20:36 INFO - looking up ingest times... | |
| 2025-01-02 12:20:44 INFO - validating and filtering... | |
| 2025-01-02 12:20:44 INFO - finalizing result schema | |
| 2025-01-02 12:20:44 INFO explode_lookup_unpacked complete | |
| 2025-01-02 12:30:11 INFO exit log_seconds_elapsed for dstream.dataframe.explode_lookup_unpacked (2/2) | |
| !!! {"dstream.dataframe.explode_lookup_unpacked (2/2)": 654.9114849567413} | |
| 2025-01-02 12:30:11 INFO exploded searchtable cpp begin | |
| 0%| | 0/50000000 [00:00<?, ?it/s] | |
| 0%| | 26450/50000000 [00:00<03:08, 264499.62it/s] | |
| 0%| | 52900/50000000 [00:00<03:10, 261966.42it/s] | |
| 0%| | 79099/50000000 [00:00<03:12, 259011.75it/s] | |
| 0%| | 105004/50000000 [00:00<03:14, 256677.42it/s] | |
| 0%| | 130675/50000000 [00:00<03:16, 254121.87it/s] | |
| 0%| | 156091/50000000 [00:00<03:16, 253410.55it/s] | |
| 0%| | 181434/50000000 [00:00<03:18, 250990.25it/s] | |
| 0%| | 206536/50000000 [00:00<03:19, 249027.47it/s] | |
| 0%| | 231442/50000000 [00:00<03:20, 248058.82it/s] | |
| 1%| | 256249/50000000 [00:01<03:21, 246527.26it/s] | |
| 1%| | 280903/50000000 [00:01<03:23, 244217.72it/s] | |
| 1%| | 305328/50000000 [00:01<03:24, 243325.35it/s] | |
| 1%| | 329662/50000000 [00:01<03:25, 242103.19it/s] | |
| 1%| | 353873/50000000 [00:01<03:25, 241820.71it/s] | |
| 1%| | 378056/50000000 [00:01<03:25, 241470.00it/s] | |
| 1%| | 402221/50000000 [00:01<03:25, 241521.92it/s] | |
| 1%| | 426374/50000000 [00:01<03:25, 241065.75it/s] | |
| 1%| | 450481/50000000 [00:01<03:26, 239696.13it/s] | |
| 1%| | 474753/50000000 [00:01<03:25, 240596.39it/s] | |
| 1%| | 498815/50000000 [00:02<03:25, 240406.16it/s] | |
| 1%| | 522857/50000000 [00:02<03:25, 240270.83it/s] | |
| 1%| | 546885/50000000 [00:02<03:26, 239965.82it/s] | |
| 1%| | 570882/50000000 [00:02<03:26, 239088.95it/s] | |
| 1%| | 594792/50000000 [00:02<03:27, 238583.28it/s] | |
| 1%| | 618651/50000000 [00:02<03:28, 237019.81it/s] | |
| 1%|▏ | 642868/50000000 [00:02<03:26, 238550.29it/s] | |
| 1%|▏ | 667422/50000000 [00:02<03:25, 240635.06it/s] | |
| 1%|▏ | 691507/50000000 [00:02<03:24, 240697.30it/s] | |
| 1%|▏ | 715579/50000000 [00:02<03:41, 222256.73it/s] | |
| 1%|▏ | 738083/50000000 [00:03<03:50, 214099.92it/s] | |
| 2%|▏ | 759719/50000000 [00:03<03:54, 209711.64it/s] | |
| 2%|▏ | 780843/50000000 [00:03<03:57, 207017.04it/s] | |
| 2%|▏ | 801644/50000000 [00:03<04:01, 203356.76it/s] | |
| 2%|▏ | 822045/50000000 [00:03<04:03, 201598.93it/s] | |
| 2%|▏ | 842245/50000000 [00:03<04:05, 199935.65it/s] | |
| 2%|▏ | 862263/50000000 [00:03<04:07, 198452.16it/s] | |
| 2%|▏ | 882123/50000000 [00:03<04:08, 197628.15it/s] | |
| 2%|▏ | 902335/50000000 [00:03<04:06, 198940.42it/s] | |
| 2%|▏ | 922430/50000000 [00:04<04:06, 199474.45it/s] | |
| 2%|▏ | 942385/50000000 [00:04<04:06, 198697.27it/s] | |
| 2%|▏ | 962348/50000000 [00:04<04:08, 197670.78it/s] | |
| 2%|▏ | 983184/50000000 [00:04<04:04, 200819.47it/s] | |
| 2%|▏ | 1003663/50000000 [00:04<04:02, 201999.52it/s] | |
| 2%|▏ | 1024348/50000000 [00:04<04:00, 203443.51it/s] | |
| 2%|▏ | 1044848/50000000 [00:04<04:00, 203891.87it/s] | |
| 2%|▏ | 1065241/50000000 [00:04<04:02, 202158.05it/s] | |
| 2%|▏ | 1085468/50000000 [00:04<04:01, 202190.41it/s] | |
| 2%|▏ | 1105691/50000000 [00:04<04:02, 201448.91it/s] | |
| 2%|▏ | 1126246/50000000 [00:05<04:01, 202638.12it/s] | |
| 2%|▏ | 1148549/50000000 [00:05<03:54, 208724.81it/s] | |
| 2%|▏ | 1170441/50000000 [00:05<03:50, 211772.54it/s] | |
| 2%|▏ | 1191815/50000000 [00:05<03:49, 212359.02it/s] | |
| 2%|▏ | 1214004/50000000 [00:05<03:46, 215175.68it/s] | |
| 2%|▏ | 1235684/50000000 [00:05<03:46, 215662.10it/s] | |
| 3%|▎ | 1257638/50000000 [00:05<03:44, 216824.33it/s] | |
| 3%|▎ | 1279745/50000000 [00:05<03:43, 218095.58it/s] | |
| 3%|▎ | 1301556/50000000 [00:05<03:43, 217614.55it/s] | |
| 3%|▎ | 1323319/50000000 [00:05<03:45, 215666.16it/s] | |
| 3%|▎ | 1345729/50000000 [00:06<03:43, 218169.23it/s] | |
| 3%|▎ | 1367551/50000000 [00:06<03:44, 216423.51it/s] | |
| 3%|▎ | 1390474/50000000 [00:06<03:40, 220228.74it/s] | |
| 3%|▎ | 1412642/50000000 [00:06<03:40, 220660.52it/s] | |
| 3%|▎ | 1436327/50000000 [00:06<03:35, 225486.24it/s] | |
| 3%|▎ | 1458882/50000000 [00:06<03:38, 222474.12it/s] | |
| 3%|▎ | 1481142/50000000 [00:06<03:42, 218156.69it/s] | |
| 3%|▎ | 1503550/50000000 [00:06<03:40, 219894.42it/s] | |
| 3%|▎ | 1525560/50000000 [00:06<03:44, 215715.39it/s] | |
| 3%|▎ | 1547188/50000000 [00:06<03:44, 215880.26it/s] | |
| 3%|▎ | 1568795/50000000 [00:07<03:47, 212761.02it/s] | |
| 3%|▎ | 1590196/50000000 [00:07<03:47, 213125.46it/s] | |
| 3%|▎ | 1611900/50000000 [00:07<03:48, 211558.72it/s] | |
| 3%|▎ | 1633438/50000000 [00:07<03:47, 212681.54it/s] | |
| 3%|▎ | 1655590/50000000 [00:07<03:44, 215282.36it/s] | |
| 3%|▎ | 1677130/50000000 [00:07<03:48, 211445.17it/s] | |
| 3%|▎ | 1699124/50000000 [00:07<03:45, 213887.26it/s] | |
| 3%|▎ | 1720532/50000000 [00:07<03:50, 209319.07it/s] | |
| 3%|▎ | 1742564/50000000 [00:07<03:47, 212534.06it/s] | |
| 4%|▎ | 1764088/50000000 [00:07<03:46, 213329.20it/s] | |
| 4%|▎ | 1785566/50000000 [00:08<03:45, 213758.95it/s] | |
| 4%|▎ | 1806958/50000000 [00:08<03:48, 210930.53it/s] | |
| 4%|▎ | 1828143/50000000 [00:08<03:48, 211200.65it/s] | |
| 4%|▎ | 1849276/50000000 [00:08<03:50, 209146.09it/s] | |
| 4%|▎ | 1870425/50000000 [00:08<03:49, 209838.46it/s] | |
| 4%|▍ | 1891418/50000000 [00:08<03:53, 205844.99it/s] | |
| 4%|▍ | 1912144/50000000 [00:08<03:53, 206256.02it/s] | |
| 4%|▍ | 1932923/50000000 [00:08<03:52, 206705.06it/s] | |
| 4%|▍ | 1953605/50000000 [00:08<03:54, 204780.57it/s] | |
| 4%|▍ | 1974809/50000000 [00:08<03:52, 206922.67it/s] | |
| 4%|▍ | 1995512/50000000 [00:09<03:53, 205322.75it/s] | |
| 4%|▍ | 2017364/50000000 [00:09<03:49, 209231.79it/s] | |
| 4%|▍ | 2038298/50000000 [00:09<03:50, 207663.93it/s] | |
| 4%|▍ | 2060498/50000000 [00:09<03:46, 211904.24it/s] | |
| 4%|▍ | 2083001/50000000 [00:09<03:42, 215801.07it/s] | |
| 4%|▍ | 2104593/50000000 [00:09<03:43, 214498.61it/s] | |
| 4%|▍ | 2127862/50000000 [00:09<03:37, 219908.92it/s] | |
| 4%|▍ | 2149864/50000000 [00:09<03:37, 219501.49it/s] | |
| 4%|▍ | 2173089/50000000 [00:09<03:34, 223304.11it/s] | |
| 4%|▍ | 2195427/50000000 [00:09<03:40, 216916.21it/s] | |
| 4%|▍ | 2217162/50000000 [00:10<03:44, 212753.93it/s] | |
| 4%|▍ | 2238611/50000000 [00:10<03:46, 210582.94it/s] | |
| 5%|▍ | 2260199/50000000 [00:10<03:45, 212124.36it/s] | |
| 5%|▍ | 2281436/50000000 [00:10<03:46, 210449.58it/s] | |
| 5%|▍ | 2302498/50000000 [00:10<03:52, 204866.60it/s] | |
| 5%|▍ | 2323020/50000000 [00:10<03:55, 202790.02it/s] | |
| 5%|▍ | 2343322/50000000 [00:10<04:00, 198041.44it/s] | |
| 5%|▍ | 2363154/50000000 [00:10<04:01, 197038.69it/s] | |
| 5%|▍ | 2382875/50000000 [00:10<04:05, 193618.12it/s] | |
| 5%|▍ | 2402914/50000000 [00:11<04:03, 195565.25it/s] | |
| 5%|▍ | 2423232/50000000 [00:11<04:00, 197794.15it/s] | |
| 5%|▍ | 2443030/50000000 [00:11<04:04, 194691.94it/s] | |
| 5%|▍ | 2463415/50000000 [00:11<04:00, 197369.80it/s] | |
| 5%|▍ | 2483172/50000000 [00:11<04:01, 196754.22it/s] | |
| 5%|▌ | 2503195/50000000 [00:11<04:00, 197713.11it/s] | |
| 5%|▌ | 2522977/50000000 [00:11<04:02, 195835.38it/s] | |
| 5%|▌ | 2543050/50000000 [00:11<04:00, 197282.22it/s] | |
| 5%|▌ | 2563738/50000000 [00:11<03:57, 200126.93it/s] | |
| 5%|▌ | 2583760/50000000 [00:11<03:59, 198115.86it/s] | |
| 5%|▌ | 2603849/50000000 [00:12<03:58, 198936.98it/s] | |
| 5%|▌ | 2623751/50000000 [00:12<04:01, 195969.46it/s] | |
| 5%|▌ | 2644493/50000000 [00:12<03:57, 199347.44it/s] | |
| 5%|▌ | 2664443/50000000 [00:12<04:00, 196909.17it/s] | |
| 5%|▌ | 2684754/50000000 [00:12<03:58, 198737.90it/s] | |
| 5%|▌ | 2705033/50000000 [00:12<04:01, 195903.16it/s] | |
| 5%|▌ | 2725443/50000000 [00:12<03:58, 198305.23it/s] | |
| 5%|▌ | 2746563/50000000 [00:12<03:53, 202111.17it/s] | |
| 6%|▌ | 2767830/50000000 [00:12<03:50, 205243.00it/s] | |
| 6%|▌ | 2788372/50000000 [00:12<03:51, 203856.15it/s] | |
| 6%|▌ | 2810208/50000000 [00:13<03:46, 208161.98it/s] | |
| 6%|▌ | 2831038/50000000 [00:13<03:47, 207436.22it/s] | |
| 6%|▌ | 2852668/50000000 [00:13<03:44, 210073.02it/s] | |
| 6%|▌ | 2874956/50000000 [00:13<03:40, 213891.67it/s] | |
| 6%|▌ | 2896354/50000000 [00:13<03:41, 212499.08it/s] | |
| 6%|▌ | 2918694/50000000 [00:13<03:38, 215739.70it/s] | |
| 6%|▌ | 2940276/50000000 [00:13<03:44, 209466.89it/s] | |
| 6%|▌ | 2961267/50000000 [00:13<03:44, 209590.82it/s] | |
| 6%|▌ | 2982257/50000000 [00:13<03:45, 208190.99it/s] | |
| 6%|▌ | 3003252/50000000 [00:13<03:45, 208708.04it/s] | |
| 6%|▌ | 3024139/50000000 [00:14<03:47, 206235.94it/s] | |
| 6%|▌ | 3044778/50000000 [00:14<03:53, 201384.71it/s] | |
| 6%|▌ | 3065028/50000000 [00:14<03:52, 201697.36it/s] | |
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| 6%|▌ | 3105085/50000000 [00:14<03:58, 196694.50it/s] | |
| 6%|▌ | 3124769/50000000 [00:14<03:59, 195664.42it/s] | |
| 6%|▋ | 3145286/50000000 [00:14<03:56, 198454.69it/s] | |
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| 6%|▋ | 3246655/50000000 [00:15<03:53, 199832.24it/s] | |
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| 7%|▋ | 3286878/50000000 [00:15<03:55, 198004.50it/s] | |
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| 7%|▋ | 3504064/50000000 [00:16<03:34, 217007.11it/s] | |
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| 2025-01-02 12:39:50 INFO exploded searchtable cpp extension complete, num records is 2130924458 | |
| 2025-01-02 12:39:50 INFO exit log_seconds_elapsed for extend_tree_searchtable_cpp_from_exploded (2/2) | |
| !!! {"extend_tree_searchtable_cpp_from_exploded (2/2)": 579.6605384349823} | |
| 2025-01-02 12:43:00 INFO collapsing dropped unifurcations removed 475045491 of 2130924458 records, 1655878967 remain | |
| 2025-01-02 12:43:15 INFO exit log_seconds_elapsed for collapse_dropped_unifurcations (2/2) | |
| !!! {"collapse_dropped_unifurcations (2/2)": 204.35385942459106} | |
| 2025-01-02 12:43:15 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 234Gi 2.6Ti 6.7Mi 49Gi 2.7Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 234Gi 2.6Ti | |
| 2025-01-02 12:43:18 INFO converting records to dict... | |
| 2025-01-02 12:43:18 INFO converting dict to dataframe... | |
| 2025-01-02 12:43:19 INFO exit log_seconds_elapsed for _construct_result_dataframe | |
| !!! {"_construct_result_dataframe": 1.0198047161102295} | |
| 2025-01-02 12:43:22 INFO converted df: 1655878967 rows | |
| shape: (5, 6) | |
| ┌─────────────────────┬─────┬─────────────┬─────────────┬─────────────────────────────┬───────────┐ | |
| │ dstream_data_id ┆ id ┆ ancestor_id ┆ hstrat_rank ┆ hstrat_differentia_bitwidth ┆ dstream_S │ | |
| │ --- ┆ --- ┆ --- ┆ --- ┆ --- ┆ --- │ | |
| │ u64 ┆ u64 ┆ u64 ┆ u64 ┆ u32 ┆ u32 │ | |
| ╞═════════════════════╪═════╪═════════════╪═════════════╪═════════════════════════════╪═══════════╡ | |
| │ 9223372036854775807 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 1 ┆ 0 ┆ 2 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 2 ┆ 1 ┆ 3 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 3 ┆ 2 ┆ 4 ┆ 1 ┆ 64 │ | |
| │ 9223372036854775807 ┆ 4 ┆ 3 ┆ 5 ┆ 1 ┆ 64 │ | |
| └─────────────────────┴─────┴─────────────┴─────────────┴─────────────────────────────┴───────────┘ | |
| 2025-01-02 12:43:22 INFO joining user-defined columns... | |
| 2025-01-02 12:43:22 INFO - 2 column to join | |
| 2025-01-02 12:43:22 INFO - joining columns: ['position', 'layer'] | |
| 2025-01-02 12:44:13 INFO exit log_seconds_elapsed for _join_user_defined_columns | |
| !!! {"_join_user_defined_columns": 50.80176758766174} | |
| 2025-01-02 12:44:13 INFO surface_unpack_reconstruct complete | |
| 2025-01-02 12:44:13 INFO reconstruction df: 1655878967 rows | |
| shape: (5, 8) | |
| ┌────────────────┬─────┬─────────────┬─────────────┬────────────────┬───────────┬───────┬──────────┐ | |
| │ dstream_data_i ┆ id ┆ ancestor_id ┆ hstrat_rank ┆ hstrat_differe ┆ dstream_S ┆ layer ┆ position │ | |
| │ d ┆ --- ┆ --- ┆ --- ┆ ntia_bitwidth ┆ --- ┆ --- ┆ --- │ | |
| │ --- ┆ u64 ┆ u64 ┆ u64 ┆ --- ┆ u32 ┆ u32 ┆ u32 │ | |
| │ u64 ┆ ┆ ┆ ┆ u32 ┆ ┆ ┆ │ | |
| ╞════════════════╪═════╪═════════════╪═════════════╪════════════════╪═══════════╪═══════╪══════════╡ | |
| │ 92233720368547 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 1 ┆ 0 ┆ 2 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 2 ┆ 1 ┆ 3 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 3 ┆ 2 ┆ 4 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 4 ┆ 3 ┆ 5 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └────────────────┴─────┴─────────────┴─────────────┴────────────────┴───────────┴───────┴──────────┘ | |
| 2025-01-02 12:47:03 INFO exit log_seconds_elapsed for hstrat.dataframe.surface_unpack_reconstruct | |
| !!! {"hstrat.dataframe.surface_unpack_reconstruct": 4534.49625825882} | |
| do postprocessing | |
| INFO: Using cached SIF image | |
| /usr/local/lib/python3.12/dist-packages/alifedata_phyloinformatics_convert/_impl/phytrack_Systematcs.py:7: UserWarning: ImportWarning: phylotrackpy.Systematics import failed; inserting a no-op mock for Systematics. This is likely because phylotrackpy is not installed. | |
| warnings.warn( | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:365: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:436: SyntaxWarning: invalid escape sequence '\-' | |
| """Prunes the topology of a node to conserve only the selected list of leaf | |
| /usr/local/lib/python3.12/dist-packages/ete3/coretype/tree.py:1508: SyntaxWarning: invalid escape sequence '\-' | |
| """ | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:51: SyntaxWarning: invalid escape sequence '\[' | |
| _ILEGAL_NEWICK_CHARS = ":;(),\[\]\t\n\r=" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:54: SyntaxWarning: invalid escape sequence '\[' | |
| _NHX_RE = "\[&&NHX:[^\]]*\]" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:55: SyntaxWarning: invalid escape sequence '\s' | |
| _FLOAT_RE = "\s*[+-]?\d+\.?\d*(?:[eE][-+]?\d+)?\s*" | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/newick.py:402: SyntaxWarning: invalid escape sequence '\s' | |
| matcher_str= '^\s*%s\s*%s\s*(%s)?\s*$' % (FIRST_MATCH, SECOND_MATCH, _NHX_RE) | |
| /usr/local/lib/python3.12/dist-packages/ete3/utils.py:82: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:76: SyntaxWarning: invalid escape sequence '\s' | |
| m = re.match("^\s*(\d+)\s+(\d+)",line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:108: SyntaxWarning: invalid escape sequence '\s' | |
| SG.id2seq[id_counter] += re.sub("\s","", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:123: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s","",m.groups()[1]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/parser/phylip.py:138: SyntaxWarning: invalid escape sequence '\s' | |
| seq = re.sub("\s", "", line) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:132: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])?(\d+)([^0-9])?") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylo/phylotree.py:188: SyntaxWarning: invalid escape sequence '\d' | |
| id_match = re.compile("([^0-9])(\d+)([^0-9])") | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:74: SyntaxWarning: invalid escape sequence '\(' | |
| k = int(re.sub ('.* \(K=([0-9]+)\)\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:78: SyntaxWarning: invalid escape sequence '\d' | |
| re.match ('^[a-z]+.*(\d+\.\d{5} *){'+ str(k) +'}', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:82: SyntaxWarning: invalid escape sequence '\d' | |
| classes[var] = [float(v) for v in re.findall('\d+\.\d{5}', line)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:86: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:92: SyntaxWarning: invalid escape sequence '\d' | |
| k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:217: SyntaxWarning: invalid escape sequence '\(' | |
| model._tree = EvolTree (re.findall ('\(.*\);', ''.join(all_lines))[2]) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:227: SyntaxWarning: invalid escape sequence '\d' | |
| line = list(map (float, re.findall ('\d\.\d+', all_lines [i+j+1]))) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:240: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(-\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:245: SyntaxWarning: invalid escape sequence '\d' | |
| line = re.sub ('.* np: *(\d+)\): +(nan).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:252: SyntaxWarning: invalid escape sequence '\d' | |
| labels = re.findall ('\d+\.\.\d+', line + ' ') | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:258: SyntaxWarning: invalid escape sequence '\d' | |
| model.stats ['kappa'] = float (re.sub ('.*(\d+\.\d+).*', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:264: SyntaxWarning: invalid escape sequence '\d' | |
| if not re.match (' +\d+\.\.\d+ +\d+\.\d+ ', line): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/parser/codemlparser.py:265: SyntaxWarning: invalid escape sequence '\d' | |
| if re.match (' +( +\d+\.\d+){8}', all_lines [i+1]): | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:468: SyntaxWarning: invalid escape sequence '\[' | |
| nwk += sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/evoltree.py:471: SyntaxWarning: invalid escape sequence '\[' | |
| nwk = sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', | |
| /usr/local/lib/python3.12/dist-packages/ete3/tools/utils.py:28: SyntaxWarning: invalid escape sequence '\[' | |
| return re.sub("\\033\[[^m]+m", "", string) | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:367: SyntaxWarning: invalid escape sequence '\.' | |
| if sub('\..*', '', model) in AVAIL: | |
| /usr/local/lib/python3.12/dist-packages/ete3/evol/model.py:368: SyntaxWarning: invalid escape sequence '\.' | |
| return model, AVAIL [sub('\..*', '', model)] | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:75: SyntaxWarning: invalid escape sequence '\w' | |
| ID_PATTERN = re.compile("^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:153: SyntaxWarning: invalid escape sequence '\w' | |
| m = re.search("Phy(\w{7})_[\w\d]+", name) | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:500: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:756: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_GEN_REGEXP_FILTER = "^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:757: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/phylomedb/phylomeDB3.py:758: SyntaxWarning: invalid escape sequence '\w' | |
| QUERY_INT_REGEXP_FILTER = "^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' | |
| _COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' | |
| compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' | |
| compatible_code = re.sub('<g [^>]+>\s*</g>', '', compatible_code) | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_BioPhyloTree.py:16: UserWarning: ImportWarning: Bio.Phylo.TreeConstruction import failed; inserting a no-op mock for BioPhyloTree. | |
| warnings.warn( | |
| 2025-01-02 12:47:27 INFO instantiating trie postprocess functor: `hstrat.AssignOriginTimeNodeRankTriePostprocessor(t0='dstream_S')` | |
| 2025-01-02 12:47:27 INFO beginning surface_postprocess_trie | |
| 2025-01-02 12:47:27 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 30Gi 2.9Ti 6.7Mi 64Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 30Gi 2.9Ti | |
| 2025-01-02 12:47:28 INFO raw tree df: 1655878967 rows | |
| shape: (5, 8) | |
| ┌────────────────┬─────┬─────────────┬─────────────┬────────────────┬───────────┬───────┬──────────┐ | |
| │ dstream_data_i ┆ id ┆ ancestor_id ┆ hstrat_rank ┆ hstrat_differe ┆ dstream_S ┆ layer ┆ position │ | |
| │ d ┆ --- ┆ --- ┆ --- ┆ ntia_bitwidth ┆ --- ┆ --- ┆ --- │ | |
| │ --- ┆ u32 ┆ u32 ┆ u32 ┆ --- ┆ u8 ┆ u8 ┆ u32 │ | |
| │ u64 ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ │ | |
| ╞════════════════╪═════╪═════════════╪═════════════╪════════════════╪═══════════╪═══════╪══════════╡ | |
| │ 92233720368547 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 1 ┆ 0 ┆ 2 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 2 ┆ 1 ┆ 3 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 3 ┆ 2 ┆ 4 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 4 ┆ 3 ┆ 5 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └────────────────┴─────┴─────────────┴─────────────┴────────────────┴───────────┴───────┴──────────┘ | |
| /usr/local/lib/python3.12/dist-packages/hstrat/dataframe/_surface_postprocess_trie.py:120: PerformanceWarning: Determining the column names of a LazyFrame requires resolving its schema, which is a potentially expensive operation. Use `LazyFrame.collect_schema().names()` to get the column names without this warning. | |
| original_columns = df.columns | |
| 2025-01-02 12:47:28 INFO extracting differentia bitwidth | |
| 2025-01-02 12:47:58 INFO - differentia bitwidth: 1 | |
| 2025-01-02 12:47:58 INFO converting DataFrame to Pandas... | |
| 2025-01-02 12:48:33 INFO exit log_seconds_elapsed for pl.DataFrame.to_pandas | |
| !!! {"pl.DataFrame.to_pandas": 34.82953453063965} | |
| 2025-01-02 12:48:33 INFO as pandas df: 5 rows | |
| shape: (5, 8) | |
| ┌────────────────┬─────┬─────────────┬─────────────┬────────────────┬───────────┬───────┬──────────┐ | |
| │ dstream_data_i ┆ id ┆ ancestor_id ┆ hstrat_rank ┆ hstrat_differe ┆ dstream_S ┆ layer ┆ position │ | |
| │ d ┆ --- ┆ --- ┆ --- ┆ ntia_bitwidth ┆ --- ┆ --- ┆ --- │ | |
| │ --- ┆ u32 ┆ u32 ┆ u32 ┆ --- ┆ u8 ┆ f64 ┆ f64 │ | |
| │ u64 ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ │ | |
| ╞════════════════╪═════╪═════════════╪═════════════╪════════════════╪═══════════╪═══════╪══════════╡ | |
| │ 92233720368547 ┆ 0 ┆ 0 ┆ 0 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 1 ┆ 0 ┆ 2 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 2 ┆ 1 ┆ 3 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 3 ┆ 2 ┆ 4 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 92233720368547 ┆ 4 ┆ 3 ┆ 5 ┆ 1 ┆ 64 ┆ null ┆ null │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └────────────────┴─────┴─────────────┴─────────────┴────────────────┴───────────┴───────┴──────────┘ | |
| 2025-01-02 12:48:33 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 90Gi 2.8Ti 6.7Mi 64Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 90Gi 2.8Ti | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_alifestd_mark_roots.py:25: SettingWithCopyWarning: | |
| A value is trying to be set on a copy of a slice from a DataFrame. | |
| Try using .loc[row_indexer,col_indexer] = value instead | |
| See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy | |
| phylogeny_df["is_root"] = False | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_alifestd_mark_oldest_root.py:35: SettingWithCopyWarning: | |
| A value is trying to be set on a copy of a slice from a DataFrame. | |
| Try using .loc[row_indexer,col_indexer] = value instead | |
| See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy | |
| phylogeny_df["is_oldest_root"] = False | |
| 2025-01-02 12:54:31 INFO exit log_seconds_elapsed for alifestd_delete_trunk_asexual | |
| !!! {"alifestd_delete_trunk_asexual": 358.107768535614} | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_alifestd_collapse_unifurcations.py:78: SettingWithCopyWarning: | |
| A value is trying to be set on a copy of a slice from a DataFrame. | |
| Try using .loc[row_indexer,col_indexer] = value instead | |
| See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy | |
| phylogeny_df["id"] = original_ids[keep_filter] | |
| /usr/local/lib/python3.12/dist-packages/hstrat/_auxiliary_lib/_alifestd_collapse_unifurcations.py:79: SettingWithCopyWarning: | |
| A value is trying to be set on a copy of a slice from a DataFrame. | |
| Try using .loc[row_indexer,col_indexer] = value instead | |
| See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy | |
| phylogeny_df["ancestor_id"] = original_ids[ancestor_ids[keep_filter]] | |
| 2025-01-02 13:04:12 INFO exit log_seconds_elapsed for alifestd_collapse_unifurcations | |
| !!! {"alifestd_collapse_unifurcations": 580.6640989780426} | |
| 2025-01-02 13:04:12 INFO collapsed tree df: 5 rows | |
| shape: (5, 10) | |
| ┌──────────┬────────┬──────────┬─────────┬─────────┬─────────┬───────┬─────────┬─────────┬─────────┐ | |
| │ dstream_ ┆ id ┆ ancestor ┆ hstrat_ ┆ hstrat_ ┆ dstream ┆ layer ┆ positio ┆ is_trun ┆ ancesto │ | |
| │ data_id ┆ --- ┆ _id ┆ rank ┆ differe ┆ _S ┆ --- ┆ n ┆ k ┆ r_is_tr │ | |
| │ --- ┆ u32 ┆ --- ┆ --- ┆ ntia_bi ┆ --- ┆ f64 ┆ --- ┆ --- ┆ unk │ | |
| │ u64 ┆ ┆ u32 ┆ u32 ┆ twidth ┆ u8 ┆ ┆ f64 ┆ bool ┆ --- │ | |
| │ ┆ ┆ ┆ ┆ --- ┆ ┆ ┆ ┆ ┆ bool │ | |
| │ ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ ┆ ┆ │ | |
| ╞══════════╪════════╪══════════╪═════════╪═════════╪═════════╪═══════╪═════════╪═════════╪═════════╡ | |
| │ 92233720 ┆ 164272 ┆ 164272 ┆ 65 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 572607 ┆ 164273 ┆ 164272 ┆ 74 ┆ 1 ┆ 64 ┆ 0.0 ┆ 572607. ┆ false ┆ false │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ ┆ 0 ┆ ┆ │ | |
| │ 92233720 ┆ 221883 ┆ 221883 ┆ 64 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 8618 ┆ 221884 ┆ 221883 ┆ 75 ┆ 1 ┆ 64 ┆ 0.0 ┆ 8618.0 ┆ false ┆ false │ | |
| │ 92233720 ┆ 245676 ┆ 245676 ┆ 69 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └──────────┴────────┴──────────┴─────────┴─────────┴─────────┴───────┴─────────┴─────────┴─────────┘ | |
| 2025-01-02 13:05:29 INFO exit log_seconds_elapsed for alifestd_assign_contiguous_ids | |
| !!! {"alifestd_assign_contiguous_ids": 76.55585050582886} | |
| 2025-01-02 13:05:29 INFO reassigned tree df: 5 rows | |
| shape: (5, 10) | |
| ┌──────────┬─────┬──────────┬──────────┬──────────┬──────────┬───────┬─────────┬─────────┬─────────┐ | |
| │ dstream_ ┆ id ┆ ancestor ┆ hstrat_r ┆ hstrat_d ┆ dstream_ ┆ layer ┆ positio ┆ is_trun ┆ ancesto │ | |
| │ data_id ┆ --- ┆ _id ┆ ank ┆ ifferent ┆ S ┆ --- ┆ n ┆ k ┆ r_is_tr │ | |
| │ --- ┆ i64 ┆ --- ┆ --- ┆ ia_bitwi ┆ --- ┆ f64 ┆ --- ┆ --- ┆ unk │ | |
| │ u64 ┆ ┆ i64 ┆ u32 ┆ dth ┆ u8 ┆ ┆ f64 ┆ bool ┆ --- │ | |
| │ ┆ ┆ ┆ ┆ --- ┆ ┆ ┆ ┆ ┆ bool │ | |
| │ ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ ┆ ┆ │ | |
| ╞══════════╪═════╪══════════╪══════════╪══════════╪══════════╪═══════╪═════════╪═════════╪═════════╡ | |
| │ 92233720 ┆ 0 ┆ 0 ┆ 65 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 572607 ┆ 1 ┆ 0 ┆ 74 ┆ 1 ┆ 64 ┆ 0.0 ┆ 572607. ┆ false ┆ false │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ ┆ 0 ┆ ┆ │ | |
| │ 92233720 ┆ 2 ┆ 2 ┆ 64 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 8618 ┆ 3 ┆ 2 ┆ 75 ┆ 1 ┆ 64 ┆ 0.0 ┆ 8618.0 ┆ false ┆ false │ | |
| │ 92233720 ┆ 4 ┆ 4 ┆ 69 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true │ | |
| │ 36854775 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └──────────┴─────┴──────────┴──────────┴──────────┴──────────┴───────┴─────────┴─────────┴─────────┘ | |
| 2025-01-02 13:05:43 INFO exit log_seconds_elapsed for trie_postprocessor | |
| !!! {"trie_postprocessor": 14.663167238235474} | |
| 2025-01-02 13:05:43 INFO with trie postprocessing df: 5 rows | |
| shape: (5, 11) | |
| ┌─────────┬─────┬─────────┬─────────┬─────────┬────────┬───────┬────────┬────────┬────────┬────────┐ | |
| │ dstream ┆ id ┆ ancesto ┆ hstrat_ ┆ hstrat_ ┆ dstrea ┆ layer ┆ positi ┆ is_tru ┆ ancest ┆ origin │ | |
| │ _data_i ┆ --- ┆ r_id ┆ rank ┆ differe ┆ m_S ┆ --- ┆ on ┆ nk ┆ or_is_ ┆ _time │ | |
| │ d ┆ i64 ┆ --- ┆ --- ┆ ntia_bi ┆ --- ┆ f64 ┆ --- ┆ --- ┆ trunk ┆ --- │ | |
| │ --- ┆ ┆ i64 ┆ u32 ┆ twidth ┆ u8 ┆ ┆ f64 ┆ bool ┆ --- ┆ u32 │ | |
| │ u64 ┆ ┆ ┆ ┆ --- ┆ ┆ ┆ ┆ ┆ bool ┆ │ | |
| │ ┆ ┆ ┆ ┆ u8 ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| ╞═════════╪═════╪═════════╪═════════╪═════════╪════════╪═══════╪════════╪════════╪════════╪════════╡ | |
| │ 9223372 ┆ 0 ┆ 0 ┆ 65 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true ┆ 1 │ | |
| │ 0368547 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 572607 ┆ 1 ┆ 0 ┆ 74 ┆ 1 ┆ 64 ┆ 0.0 ┆ 572607 ┆ false ┆ false ┆ 10 │ | |
| │ ┆ ┆ ┆ ┆ ┆ ┆ ┆ .0 ┆ ┆ ┆ │ | |
| │ 9223372 ┆ 2 ┆ 2 ┆ 64 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true ┆ 0 │ | |
| │ 0368547 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 8618 ┆ 3 ┆ 2 ┆ 75 ┆ 1 ┆ 64 ┆ 0.0 ┆ 8618.0 ┆ false ┆ false ┆ 11 │ | |
| │ 9223372 ┆ 4 ┆ 4 ┆ 69 ┆ 1 ┆ 64 ┆ null ┆ null ┆ false ┆ true ┆ 5 │ | |
| │ 0368547 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| │ 75807 ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ ┆ │ | |
| └─────────┴─────┴─────────┴─────────┴─────────┴────────┴───────┴────────┴────────┴────────┴────────┘ | |
| 2025-01-02 13:05:43 INFO setting up hstrat_rank_from_t0... | |
| 2025-01-02 13:05:44 INFO dropping columns to_drop={'hstrat_rank', 'ancestor_is_trunk', 'hstrat_differentia_bitwidth', 'dstream_S', 'is_trunk'}... | |
| 2025-01-02 13:05:51 INFO converting DataFrame to Polars... | |
| 2025-01-02 13:05:56 INFO exit log_seconds_elapsed for pl.from_pandas | |
| !!! {"pl.from_pandas": 4.18193507194519} | |
| 2025-01-02 13:05:56 INFO as polars df: 197387733 rows | |
| shape: (5, 7) | |
| ┌─────────────────────┬─────┬─────────────┬───────┬──────────┬─────────────┬─────────────────────┐ | |
| │ dstream_data_id ┆ id ┆ ancestor_id ┆ layer ┆ position ┆ origin_time ┆ hstrat_rank_from_t0 │ | |
| │ --- ┆ --- ┆ --- ┆ --- ┆ --- ┆ --- ┆ --- │ | |
| │ u64 ┆ i64 ┆ i64 ┆ f64 ┆ f64 ┆ u32 ┆ u32 │ | |
| ╞═════════════════════╪═════╪═════════════╪═══════╪══════════╪═════════════╪═════════════════════╡ | |
| │ 9223372036854775807 ┆ 0 ┆ 0 ┆ null ┆ null ┆ 1 ┆ 1 │ | |
| │ 572607 ┆ 1 ┆ 0 ┆ 0.0 ┆ 572607.0 ┆ 10 ┆ 10 │ | |
| │ 9223372036854775807 ┆ 2 ┆ 2 ┆ null ┆ null ┆ 0 ┆ 0 │ | |
| │ 8618 ┆ 3 ┆ 2 ┆ 0.0 ┆ 8618.0 ┆ 11 ┆ 11 │ | |
| │ 9223372036854775807 ┆ 4 ┆ 4 ┆ null ┆ null ┆ 5 ┆ 5 │ | |
| └─────────────────────┴─────┴─────────────┴───────┴──────────┴─────────────┴─────────────────────┘ | |
| 2025-01-02 13:05:56 INFO memory usage: | |
| total used free shared buff/cache available | |
| Mem: 3.0Ti 39Gi 2.8Ti 6.7Mi 64Gi 2.9Ti | |
| Swap: 0B 0B 0B | |
| Total: 3.0Ti 39Gi 2.8Ti | |
| 2025-01-02 13:06:42 INFO exit log_seconds_elapsed for hstrat.dataframe.surface_postprocess_trie | |
| !!! {"hstrat.dataframe.surface_postprocess_trie": 1155.2285170555115} | |
| cleanup | |
| 15G /tmp/local/47988778/5d86acef-8dfb-4052-b97f-3b5a3f6801d0/trie.pqt | |
| finalization telemetry -------------------------------------- 5802 | |
| total 18333697 | |
| -rw-r----- 1 mmore500 beacon 3294817199 Jan 2 13:07 a=phylo+ext=.pqt | |
| -rw-r----- 1 mmore500 beacon 2538 Jan 2 13:06 a=result+ext=.csv | |
| -rw-r----- 1 mmore500 beacon 15647492025 Jan 2 13:06 a=trie+ext=.pqt | |
| 18G /mnt/home/mmore500/scratch/hstrat-reconstruction-algo/2024-12-28-bigreconstruct-v1.16.0-bigmem/2025-01-02/__0 | |
| SECONDS 5802 | |
| >>>complete<<< |
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