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Troubleshooting bench::mark with qs::qread()
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library(bench) | |
library(qs) | |
library(sf) | |
library(cowplot) | |
# load ggplot | |
download.file("https://www.dropbox.com/s/ao0827vayr5u3vx/hawaii_agriculture_100m_basemap.rds?raw=1" , "hawaii_agriculture_100m_basemap.rds") | |
hawaii <- readRDS("hawaii_agriculture_100m_basemap.rds") | |
# bench mark saving | |
save_compressed <- bench::mark(saveRDS(hawaii, "hawaii_compressed.rds"), iterations = 50) | |
save_uncompressed <- bench::mark(saveRDS(hawaii, "hawaii_uncompressed.rds", compress = FALSE), iterations = 50) | |
save_qs <- bench::mark(qsave(hawaii, "hawaii.qs"), iterations = 50) | |
# bench mark reading | |
read_compressed <- bench::mark(hawaii <- readRDS("hawaii_compressed.rds"), iterations = 50) | |
read_uncompressed <- bench::mark(hawaii <- readRDS("hawaii_uncompressed.rds"), iterations = 50) | |
read_qs <- bench::mark(hawaii <- qread("hawaii.qs"), iterations = 50) | |
# combine | |
bench_save <- rbind(save_compressed, save_uncompressed, save_qs) | |
bench_read <- rbind(read_compressed, bench_read_uncompressed, read_qs) | |
# resort to system.time | |
# bench mark saving | |
system.time(saveRDS(hawaii, "hawaii_compressed.rds")) | |
system.time(saveRDS(hawaii, "hawaii_uncompressed.rds", compress = FALSE)) | |
system.time(qsave(hawaii, "hawaii.qs")) # this freezes my 8Gb laptop and 32Gb workstation | |
# bench mark reading | |
system.time(hawaii <- readRDS("hawaii_compressed.rds")) | |
system.time(hawaii <- readRDS("hawaii_uncompressed.rds")) | |
system.time(hawaii <- qread("hawaii.qs")) | |
plot_01 <- df %>% dplyr::filter(io == "write") %>% ggplot(., aes(x=method, y=time, fill=method)) + | |
geom_bar(stat = "identity") + ggtitle("write time in seconds") + scale_fill_brewer(palette = "Set1") + theme_light() + theme(legend.position="none") | |
plot_02 <- df %>% dplyr::filter(io == "read") %>% ggplot(., aes(x=method, y=time, fill=method)) + | |
geom_bar(stat = "identity") + ggtitle("read time in seconds") + scale_fill_brewer(palette = "Set1") + theme_light() + theme(legend.position="none") | |
plot_grid(plot_01, plot_02) |
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