Stephen J Bush muppetjones

muppetjones / FastQC_aggregate.sh

Last active August 29, 2015 14:26 — forked from danielecook/FastQC_aggregate.sh

Examine Fastqc reports in aggregate; brings images, statistics, and summaries together. #fastq

	#!/bin/bash
	# Run this script in project root--expected structure: `./fastqc/<sample>/*.zip`
	# This script aggregates images of each type in individual folders
	# o looking across data is quick.

	zips=`ls fastqc//.zip`

	for i in $zips; do
	unzip -oq -d "$(dirname "$i")" $i;
	done