optimized input subquery

optimized_input_subquery.sql

EXPLAIN (ANALYZE, COSTS, VERBOSE, BUFFERS, FORMAT JSON) SELECT 
  filtered_jobs_subquery.job_id, 
  filtered_jobs_subquery."reference_genome|history_item_152775960", 
  filtered_jobs_subquery."library|input_1_152726579" 
FROM 
  (
    SELECT 
      job_ids_subquery.job_id AS job_id, 
      job_ids_subquery."reference_genome|history_item_152775960" AS "reference_genome|history_item_152775960", 
      job_ids_subquery."library|input_1_152726579" AS "library|input_1_152726579" 
    FROM 
      (
        SELECT 
          job.id AS job_id, 
          job_to_input_dataset_1.dataset_id AS "reference_genome|history_item_152775960", 
          job_to_input_dataset_2.dataset_id AS "library|input_1_152726579" 
        FROM 
          job 
          JOIN job_to_input_dataset AS job_to_input_dataset_1 ON job_to_input_dataset_1.job_id = job.id 
          JOIN history_dataset_association AS history_dataset_association_1 ON job_to_input_dataset_1.dataset_id = history_dataset_association_1.id 
          JOIN history_dataset_association AS history_dataset_association_2 ON history_dataset_association_2.dataset_id = history_dataset_association_1.dataset_id 
          JOIN job_to_input_dataset AS job_to_input_dataset_2 ON job_to_input_dataset_2.job_id = job.id 
          JOIN history_dataset_association AS history_dataset_association_3 ON job_to_input_dataset_2.dataset_id = history_dataset_association_3.id 
          JOIN history_dataset_association AS history_dataset_association_4 ON history_dataset_association_4.dataset_id = history_dataset_association_3.dataset_id 
        WHERE 
          job_to_input_dataset_1.name IN (
            'reference_genome|history_item', 
            'history_item'
          ) 
          AND history_dataset_association_2.id = 152775960 
          AND (
            (
              job_to_input_dataset_1.dataset_version IN (
                0, history_dataset_association_1.version
              ) 
              OR history_dataset_association_1.update_time < job.create_time
            ) 
            AND history_dataset_association_1.extension = history_dataset_association_2.extension 
            AND history_dataset_association_1.name = history_dataset_association_2.name 
            OR history_dataset_association_1.id IN (
              SELECT 
                history_dataset_association.id 
              FROM 
                history_dataset_association, 
                history_dataset_association_history AS history_dataset_association_history_1 
              WHERE 
                history_dataset_association.id = history_dataset_association_history_1.history_dataset_association_id 
                AND history_dataset_association_history_1.name = history_dataset_association_2.name 
                AND history_dataset_association_history_1.extension = history_dataset_association_2.extension 
                AND job_to_input_dataset_1.dataset_version = history_dataset_association_history_1.version 
                AND history_dataset_association_history_1.metadata = history_dataset_association_2.metadata
            )
          ) 
          AND (
            history_dataset_association_1.deleted = false 
            OR history_dataset_association_2.deleted = false
          ) 
          AND job_to_input_dataset_2.name IN ('library|input_1', 'input_1') 
          AND history_dataset_association_4.id = 152726579 
          AND (
            (
              job_to_input_dataset_2.dataset_version IN (
                0, history_dataset_association_3.version
              ) 
              OR history_dataset_association_3.update_time < job.create_time
            ) 
            AND history_dataset_association_3.extension = history_dataset_association_4.extension 
            AND history_dataset_association_3.name = history_dataset_association_4.name 
            OR history_dataset_association_3.id IN (
              SELECT 
                history_dataset_association.id 
              FROM 
                history_dataset_association, 
                history_dataset_association_history AS history_dataset_association_history_2 
              WHERE 
                history_dataset_association.id = history_dataset_association_history_2.history_dataset_association_id 
                AND history_dataset_association_history_2.name = history_dataset_association_4.name 
                AND history_dataset_association_history_2.extension = history_dataset_association_4.extension 
                AND job_to_input_dataset_2.dataset_version = history_dataset_association_history_2.version 
                AND history_dataset_association_history_2.metadata = history_dataset_association_4.metadata
            )
          ) 
          AND (
            history_dataset_association_3.deleted = false 
            OR history_dataset_association_4.deleted = false
          ) 
        GROUP BY 
          job.id, 
          job_to_input_dataset_1.dataset_id, 
          job_to_input_dataset_2.dataset_id
      ) AS job_ids_subquery 
      JOIN job ON job.id = job_ids_subquery.job_id 
      JOIN history ON job.history_id = history.id 
      JOIN job_parameter AS job_parameter_1 ON job.id = job_parameter_1.job_id 
      JOIN job_parameter AS job_parameter_2 ON job.id = job_parameter_2.job_id 
      JOIN job_parameter AS job_parameter_3 ON job.id = job_parameter_3.job_id 
      JOIN job_parameter AS job_parameter_4 ON job.id = job_parameter_4.job_id 
    WHERE 
      job.tool_id = 'toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy1' 
      AND (
        job.user_id = 392010 
        OR history.published = true
      ) 
      AND job.copied_from_job_id IS NULL 
      AND job.tool_version = '2.2.1+galaxy1' 
      AND job.state IN ('ok') 
      AND job.id = job_parameter_1.job_id 
      AND job_parameter_1.name = 'reference_genome' 
      AND job_parameter_1.value LIKE '{"__current_case__": 1, "history_item": {"values": [{"id": %, "src": "hda"}]}, "source": "history"}' 
      AND job.id = job_parameter_2.job_id 
      AND job_parameter_2.name = 'library' 
      AND job_parameter_2.value LIKE '{"__current_case__": 0, "input_1": {"values": [{"id": %, "src": "hda"}]}, "rna_strandness": "", "type": "single"}' 
      AND job.id = job_parameter_3.job_id 
      AND job_parameter_3.name = 'sum' 
      AND job_parameter_3.value = '{"new_summary": false, "summary_file": false}' 
      AND job.id = job_parameter_4.job_id 
      AND job_parameter_4.name = 'adv' 
      AND job_parameter_4.value = '{"alignment_options": {"__current_case__": 0, "alignment_options_selector": "defaults"}, "input_options": {"__current_case__": 0, "input_options_selector": "defaults"}, "other_options": {"__current_case__": 0, "other_options_selector": "defaults"}, "output_options": {"__current_case__": 0, "output_options_selector": "defaults"}, "reporting_options": {"__current_case__": 0, "reporting_options_selector": "defaults"}, "sam_options": {"__current_case__": 0, "sam_options_selector": "defaults"}, "scoring_options": {"__current_case__": 0, "scoring_options_selector": "defaults"}, "spliced_options": {"__current_case__": 0, "spliced_options_selector": "defaults"}}'
  ) AS filtered_jobs_subquery 
WHERE 
  NOT (
    EXISTS (
      SELECT 
        * 
      FROM 
        job_to_output_dataset_collection, 
        history_dataset_collection_association 
      WHERE 
        job_to_output_dataset_collection.job_id = filtered_jobs_subquery.job_id 
        AND job_to_output_dataset_collection.dataset_collection_id = history_dataset_collection_association.id 
        AND history_dataset_collection_association.deleted = true
    )
  ) 
  AND NOT (
    EXISTS (
      SELECT 
        * 
      FROM 
        job_to_output_dataset, 
        history_dataset_association 
      WHERE 
        job_to_output_dataset.job_id = filtered_jobs_subquery.job_id 
        AND job_to_output_dataset.dataset_id = history_dataset_association.id 
        AND history_dataset_association.deleted = true
    )
  ) 
ORDER BY 
  filtered_jobs_subquery.job_id DESC