Created
May 25, 2020 12:16
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query: | |
>contig_1648_86 # 93536 # 94054 # 1 # ID=21_86;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.696 | |
MMTLLHLISAVALLVWGTHIVRTGVLRVYGARLRRWLGGRLNRPLAFAAGTGVTALVQSS | |
NATALLASGFVADRLMPLATATREVLRMGDIVEGMLAAILEALRNERAGSARDLGDQDDE | |
LDELYTGIKLYLELIGDMKRLNSLFCAVAFSTVEEEDGDGPGLSTLSRRSRP* | |
subject: | |
>tr|A0A2E9RF79|A0A2E9RF79_9GAMM PhoU domain-containing protein OS=Alcanivorax sp. OX=1872427 GN=CL543_00625 PE=4 SV=1 | |
MMTLLHLXSAVALLVWGTHIVRTGVLRVYGARLRRWLGGRLNRPLAFAAGTGVTALVQSS | |
NATALLASGFVADRLMPLATALAILLGADLGTALMARVLTLDLSWLWPLLVIAGVPLFLS | |
RKQSRAGQLGRVALGLGLILLALALIIDAMAPITEARGVRVMFESLTGDLMLDALVGALF | |
AMLTWSSLAAVLLTATLAAAGVLPLPVALALVVGANVGSGLLALINTSLHNTAGRRVALG | |
NLLFKLLGLALVLPAVPWLADWLATLPFDDQDRVIGFHVAYNGARCLLMLPFTGPMARLA | |
TRLMPDHGGADDTPRPRHLDPAALDRPPLALANATREVLRMGDIVEGMLAAILEALRNER | |
AGSARDLGDQDDELDELYTGIKLYLARVSREQLSDPDQRRWSQVMEMSINLEQAGDQIEH | |
MMEKVRDRKTARRRSFSDSGLQELTDLHGRLHDNLRLGLSVFLSGDPESARQLLIEKDRF | |
RDRQRQLSHAHLERLHRRVVQSIETSSLHLELIGDMKRLNSLFCAVAFSTVEEEDGDGPG | |
LSTLSRRSRP | |
Results: | |
>A0A2E9RF79_9GAMM PhoU domain-containing protein OS=Alcanivorax sp. OX=1872427 GN=CL543_00625 PE=4 SV=1 | |
Length=550 | |
Score = 170.6 bits (431), Expect = 4.1e-47 | |
Identities = 171/550 (31%), Positives = 171/550 (31%), Gaps = 378/550 (68%) | |
Query 1 MMTLLHLISAVALLVWGTHIVRTGVLRVYGARLRRWLGGRLNRPLAFAAGTGVTALVQSS | |
MMTLLHL SAVALLVWGTHIVRTGVLRVYGARLRRWLGGRLNRPLAFAAGTGVTALVQSS | |
Sbjct 1 MMTLLHLXSAVALLVWGTHIVRTGVLRVYGARLRRWLGGRLNRPLAFAAGTGVTALVQSS | |
Query 61 NATALLASGFVADRLMPLAT---------------------------------------- | |
NATALLASGFVADRLMPLAT | |
Sbjct 61 NATALLASGFVADRLMPLATALAILLGADLGTALMARVLTLDLSWLWPLLVIAGVPLFLS | |
Query 81 ------------------------------------------------------------ | |
Sbjct 121 RKQSRAGQLGRVALGXXXXXXXXXXXXXXXXXXXXXRGVRVMFESLTGDLMLDALVGALF | |
Query 81 ------------------------------------------------------------ | |
Sbjct 181 AMLTWSSLAAVLLTATLAAAGVLPLPVALALVVGANVGSGLLALINTSLHNTAGRRVALG | |
Query 81 ------------------------------------------------------------ | |
Sbjct 241 NLLFKLLGLALVLPAVPWLADWLATLPFDDQDRVIGFHVAYNGARCLLMLPFTGPMARLA | |
Query 81 ---------------------------------ATREVLRMGDIVEGMLAAILEALRNER | |
ATREVLRMGDIVEGMLAAILEALRNER | |
Sbjct 301 TRLMPDHGGADDTPRPRHLDPAALDRPPLALANATREVLRMGDIVEGMLAAILEALRNER | |
Query 108 AGSARDLGDQDDELDELYTGIKLY------------------------------------ | |
AGSARDLGDQDDELDELYTGIKLY | |
Sbjct 361 AGSARDLGDQDDELDELYTGIKLYLARVSREQLSDPDQRRWSQVMEMSINLEQAGDQIEH | |
Query 132 ------------------------------------------------------------ | |
Sbjct 421 MMEKVRDRKTARRRSFSDSGLQELTDLHGRLHDNLRLGLSVFLSGDPESARQLLIEKDRF | |
Query 132 -----------------------------LELIGDMKRLNSLFCAVAFSTVEEEDGDGPG | |
LELIGDMKRLNSLFCAVAFSTVEEEDGDGPG | |
Sbjct 481 RDRQRQLSHAHLERLHRRVVQSIETSSLHLELIGDMKRLNSLFCAVAFSTVEEEDGDGPG | |
Query 163 LSTLSRRSRP | |
LSTLSRRSRP | |
Sbjct 541 LSTLSRRSRP | |
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