Created
February 23, 2018 04:25
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Code snippets for DNAnexus
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| # Deploy a python package on DNAnexus | |
| ## Step 1: find installation path of module | |
| python | |
| import imp | |
| imp.find_module("pandas") | |
| ## Step 2: copy module and put in tarball | |
| cp -r /mnt/software/unstowable/anaconda/lib/python2.7/site-packages/pandas . | |
| tar -zcvf pandas.tar.gz pandas/ | |
| ## in applet keep in resources/home/dnanexus and add following line to code.sh | |
| export PYTHONPATH=/home/dnanexus:$PYTHONPATH |
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