Rqc - memory error reproduce

corrupted.fastq

@M01660:65:000000000-AMRPR:1:1101:9054:7177
ACGATGAAGAAGTGTTCGTCTTCGTCCCAGTAAGCTATGTCTCCAGAATGTAGCCATCCATCCTTGTCAATCAAGGCGTTGGTCGCTTCCGGATTGTTTACATAACCGGACATAATCATAGGACCTCTCACACACAGTTCGCCTCTTTGATTAACGCCCAGCGTTTTCCCGGTATCCAGATCCACAGCCTTCGCTTCAAAAAATAAAACAACTTTACCGACCGCGCCCGGCTTATCATCCCCCTCGGGTGTAATCAAAAT
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF7FFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFF<FFBFFFFFFF7FFFFFF7FFFFFFFFFFFFFBFFFF'<FFFF<F<F<B'<7FFBB<FBFF7F7FF<FFFFB<F<FBFF'<FFFFFFF7FBFBFFB<<F!7!!0'00FBBB<FBFB'<<B<BB7<B7'0070'<<07''0''0<<'077!7<B!7'0

output.txt

Rscript fastqReport.R > output.txt
Loading required package: BiocParallel
Loading required package: methods
Loading required package: ShortRead
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    anyDuplicated, append, as.data.frame, cbind, colnames, do.call,
    duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect,
    is.unsorted, lapply, lengths, Map, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind,
    Reduce, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GenomicAlignments
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2

 *** caught segfault ***
address 0x7f6df100002b, cause 'memory not mapped'

RqcScript.R

library(Rqc)
fs <- "corrupted.fastq"
qa <- rqcQA(fs,sample=F)
sessionInfo()

sessionInfo.txt

R version 3.3.1 (2016-06-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 8 (jessie)

locale:
 [1] LC_CTYPE=C                 LC_NUMERIC=C              
 [3] LC_TIME=C                  LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=es_ES.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] Rqc_1.8.0                  ggplot2_2.2.1             
 [3] ShortRead_1.32.0           GenomicAlignments_1.10.0  
 [5] SummarizedExperiment_1.4.0 Biobase_2.34.0            
 [7] Rsamtools_1.26.1           GenomicRanges_1.26.2      
 [9] GenomeInfoDb_1.10.2        Biostrings_2.42.1         
[11] XVector_0.14.0             IRanges_2.8.1             
[13] S4Vectors_0.12.1           BiocGenerics_0.20.0       
[15] BiocParallel_1.8.1        

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.9                   biovizBase_1.22.0            
 [3] lattice_0.20-34               assertthat_0.1               
 [5] digest_0.6.11                 mime_0.5                     
 [7] R6_2.2.0                      plyr_1.8.4                   
 [9] backports_1.0.4               acepack_1.4.1                
[11] RSQLite_1.1-2                 BiocInstaller_1.24.0         
[13] httr_1.2.1                    zlibbioc_1.20.0              
[15] GenomicFeatures_1.26.2        lazyeval_0.2.0               
[17] data.table_1.10.0             rpart_4.1-10                 
[19] Matrix_1.2-7.1                checkmate_1.8.2              
[21] splines_3.3.1                 AnnotationHub_2.6.4          
[23] stringr_1.1.0                 foreign_0.8-67               
[25] RCurl_1.95-4.8                biomaRt_2.30.0               
[27] munsell_0.4.3                 shiny_1.0.0                  
[29] httpuv_1.3.3                  rtracklayer_1.34.1           
[31] base64enc_0.1-3               htmltools_0.3.5              
[33] nnet_7.3-12                   interactiveDisplayBase_1.12.0
[35] tibble_1.2                    gridExtra_2.2.1              
[37] htmlTable_1.8                 Hmisc_4.0-2                  
[39] XML_3.98-1.5                  bitops_1.0-6                 
[41] grid_3.3.1                    xtable_1.8-2                 
[43] gtable_0.2.0                  DBI_0.5-1                    
[45] magrittr_1.5                  scales_0.4.1                 
[47] stringi_1.1.2                 reshape2_1.4.2               
[49] hwriter_1.3.2                 latticeExtra_0.6-28          
[51] Formula_1.2-1                 BiocStyle_2.2.1              
[53] RColorBrewer_1.1-2            ensembldb_1.6.2              
[55] tools_3.3.1                   dichromat_2.0-0              
[57] BSgenome_1.42.0               markdown_0.7.7               
[59] yaml_2.1.14                   survival_2.40-1              
[61] AnnotationDbi_1.36.1          colorspace_1.3-2             
[63] cluster_2.0.5                 memoise_1.0.0                
[65] knitr_1.15.1                  VariantAnnotation_1.20.2     
[67] GenomicFiles_1.10.3