peranti

# This snippet illustrates how to query David from R, using the RDAVIDWebService package.

# Load RDAVIDWebService.
library("RDAVIDWebService")

# Create a DAVIDWebService object connected to David, using your registration email.
# To register, go to: http://david.abcc.ncifcrf.gov/content.jsp?file=WS.html.
david <- DAVIDWebService$new(email='[email protected]')

# Define foreground and background gene lists.

peranti

Software for scientists

Some things takes much less time and stress once you know the right tool. Below, there is a community edited list of software for scientists.

Text editors

in General purpose text/code editors. It may be better to have a good editor for everything, than different ones for different languages, scripts, notes.

peranti

List of languages and whether there is a Bio- project

Language	Bio-
C	sort of
C++	Y
Python	Y
Ruby	Y
Java	Y
Perl	Y

peranti

import numpy as np
import matplotlib.pyplot as plt

###########################################################
# dates.txt is created by `git log | grep Date > dates.txt`
###########################################################
hours = []
with open("dates.txt") as f:
    for line in f:
        hours.append( int(line.rstrip().split()[4].split(":")[0]) )