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import Foundation
import GIFModule
import HDL
import MM4
import MolecularRenderer
import QuaternionModule
import xTB

// MARK: - User-Facing Options

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//
//  FIRE.swift
//  MolecularRendererApp
//
//  Created by Philip Turner on 5/31/24.
//

import HDL
import Numerics

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//
//  FIRE.swift
//  MolecularRendererApp
//
//  Created by Philip Turner on 5/31/24.
//

import HDL
import Numerics

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import HDL
import MolecularRenderer
import QuaternionModule

// MARK: - Compile Structure

func passivate(topology: inout Topology) {
  func createHydrogen(
    atomID: UInt32,
    orbital: SIMD3<Float>

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// For profiling with D3D12 timestamp queries.
#if os(Windows)
import SwiftCOM
import WinSDK
#endif

// Temporary import for profiling CPU-side bottleneck.
import Foundation

public struct PerformanceMeter {

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// For profiling with D3D12 timestamp queries.
#if os(Windows)
import SwiftCOM
import WinSDK
#endif

// TODO: Before finishing the acceleration structure PR, remove the public
// modifier for the functions in this extension.
extension Application {
  public func checkCrashBuffer(frameID: Int) {

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extension Application {
  // TODO: Before finishing the acceleration structure PR, remove the public
  // modifier for this.
  public func updateBVH(inFlightFrameID: Int) {
    let transaction = atoms.registerChanges()
    
    device.commandQueue.withCommandList { commandList in
      // Bind the descriptor heap.
      #if os(Windows)
      commandList.setDescriptorHeap(descriptorHeap)

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extension Application {
  // Will eventually remove the public modifier and automatically invoke this
  // inside 'application.render()'.
  public func updateBVH(inFlightFrameID: Int) {
    updateBVH1(inFlightFrameID: inFlightFrameID)
    updateBVH2(inFlightFrameID: inFlightFrameID)
  }
  
  public func updateBVH1(inFlightFrameID: Int) {
    let transaction = atoms.registerChanges()

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import HDL
import MolecularRenderer

@MainActor
func createApplication() -> Application {
  // Set up the device.
  var deviceDesc = DeviceDescriptor()
  deviceDesc.deviceID = Device.fastestDeviceID
  let device = Device(descriptor: deviceDesc)
  

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//
//  FIRE.swift
//  MolecularRendererApp
//
//  Created by Philip Turner on 5/31/24.
//

import HDL
import Numerics