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robheittman/gist:2763207

Created May 21, 2012 16:44
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Revisions

  1. robheittman revised this gist May 21, 2012. 1 changed file with 7 additions and 1 deletion.
    8 changes: 7 additions & 1 deletion gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -15,6 +15,12 @@ CREATE TABLE st_countryoccurrence AS
    LEFT JOIN lookups."COUNTRYOCCURRENCE_PRESENCELOOKUP" pres ON pres."ID" = c_pres.value
    LEFT JOIN st_countryoccurrencesubfield_origin c_origin ON country.recordid = c_origin.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_ORIGINLOOKUP" origin ON origin."ID" = c_origin.value;
    drop table if exists st_infrarank;
    create table st_infrarank as select * from vw_published.vw_infrarank;
    drop table if exists st_species;
    create table st_species as select * from vw_published.vw_species;
    drop table if exists st_redlistcategoryandcriteria_all;
    create table st_redlistcategoryandcriteria_all as select * from vw_published.vw_redlistcategoryandcriteria;
    drop table if exists st_all_taxa;
    create table st_all_taxa as select * from st_infrarank union select *, '', '' from st_species;
    drop table if exists st_all_taxa_criteria;
    @@ -31,4 +37,4 @@ create table st_all_taxa_criteria_regions_ws as select g.*, name ws from st_all_
    drop table if exists published_2012_1;
    create table published_2012_1 as select ws, count(*) from st_all_taxa_criteria_global_ws where ws ilike 'PUBLISHED_2012.1%' group by ws order by ws;
    drop table if exists multi_regional_2012_1;
    create table multi_regional_2012_1 as select distinct taxonid, genus, species, infratype, assessmentid, region from st_all_taxa_criteria_ws where taxonid in (select taxonid from (select taxonid, genus, species, assessmentid, count(assessmentid) from st_all_taxa_criteria_ws where ws ilike 'PUBLISHED_2012.1%' group by taxonid, genus, species, assessmentid having count(assessmentid)>1 order by assessmentid) s1) and region!=1 order by taxonid, assessmentid;
    create table multi_regional_2012_1 as select distinct taxonid, genus, species, infratype, assessmentid, region from st_all_taxa_criteria_regions where taxonid in (select taxonid from (select taxonid, genus, species, assessmentid, count(assessmentid) from st_all_taxa_criteria_ws where ws ilike 'PUBLISHED_2012.1%' group by taxonid, genus, species, assessmentid having count(assessmentid)>1 order by assessmentid) s1) and region!=1 order by taxonid, assessmentid;
  2. robheittman revised this gist May 21, 2012. 1 changed file with 3 additions and 0 deletions.
    3 changes: 3 additions & 0 deletions gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -25,6 +25,9 @@ drop table if exists st_all_taxa_criteria_global;
    create table st_all_taxa_criteria_global as select * from st_all_taxa_criteria_by_region where region=1;
    drop table if exists st_all_taxa_criteria_global_ws;
    create table st_all_taxa_criteria_global_ws as select g.*, name ws from st_all_taxa_criteria_global g left join vw_published.vw_workingsettaxon w on g.taxonid=w.taxonid;
    drop table if exists st_all_taxa_criteria_regions_ws;
    create table st_all_taxa_criteria_regions_ws as select g.*, name ws from st_all_taxa_criteria_by_region g left join vw_published.vw_workingsettaxon w on g.taxonid=w.taxonid;

    drop table if exists published_2012_1;
    create table published_2012_1 as select ws, count(*) from st_all_taxa_criteria_global_ws where ws ilike 'PUBLISHED_2012.1%' group by ws order by ws;
    drop table if exists multi_regional_2012_1;
  3. robheittman revised this gist May 21, 2012. 1 changed file with 2 additions and 0 deletions.
    2 changes: 2 additions & 0 deletions gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -27,3 +27,5 @@ drop table if exists st_all_taxa_criteria_global_ws;
    create table st_all_taxa_criteria_global_ws as select g.*, name ws from st_all_taxa_criteria_global g left join vw_published.vw_workingsettaxon w on g.taxonid=w.taxonid;
    drop table if exists published_2012_1;
    create table published_2012_1 as select ws, count(*) from st_all_taxa_criteria_global_ws where ws ilike 'PUBLISHED_2012.1%' group by ws order by ws;
    drop table if exists multi_regional_2012_1;
    create table multi_regional_2012_1 as select distinct taxonid, genus, species, infratype, assessmentid, region from st_all_taxa_criteria_ws where taxonid in (select taxonid from (select taxonid, genus, species, assessmentid, count(assessmentid) from st_all_taxa_criteria_ws where ws ilike 'PUBLISHED_2012.1%' group by taxonid, genus, species, assessmentid having count(assessmentid)>1 order by assessmentid) s1) and region!=1 order by taxonid, assessmentid;
  4. robheittman revised this gist May 21, 2012. 1 changed file with 12 additions and 0 deletions.
    12 changes: 12 additions & 0 deletions gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -15,3 +15,15 @@ CREATE TABLE st_countryoccurrence AS
    LEFT JOIN lookups."COUNTRYOCCURRENCE_PRESENCELOOKUP" pres ON pres."ID" = c_pres.value
    LEFT JOIN st_countryoccurrencesubfield_origin c_origin ON country.recordid = c_origin.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_ORIGINLOOKUP" origin ON origin."ID" = c_origin.value;
    drop table if exists st_all_taxa;
    create table st_all_taxa as select * from st_infrarank union select *, '', '' from st_species;
    drop table if exists st_all_taxa_criteria;
    create table st_all_taxa_criteria as select t.*, c.assessmentid, c.rlcategory, c.rlcriteria, c.critversion, c.ismanual from st_all_taxa t, st_redlistcategoryandcriteria_all c where t.taxonid = c.taxonid;
    drop table if exists st_all_taxa_criteria_by_region;
    create table st_all_taxa_criteria_by_region as select a.*, r.value region from st_all_taxa_criteria a join vw_published.vw_regioninformation_regions r on a.assessmentid = r.assessmentid;
    drop table if exists st_all_taxa_criteria_global;
    create table st_all_taxa_criteria_global as select * from st_all_taxa_criteria_by_region where region=1;
    drop table if exists st_all_taxa_criteria_global_ws;
    create table st_all_taxa_criteria_global_ws as select g.*, name ws from st_all_taxa_criteria_global g left join vw_published.vw_workingsettaxon w on g.taxonid=w.taxonid;
    drop table if exists published_2012_1;
    create table published_2012_1 as select ws, count(*) from st_all_taxa_criteria_global_ws where ws ilike 'PUBLISHED_2012.1%' group by ws order by ws;
  5. robheittman revised this gist May 21, 2012. 1 changed file with 1 addition and 0 deletions.
    1 change: 1 addition & 0 deletions gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -1,3 +1,4 @@
    vacuum analyze;
    drop table if exists st_countryoccurrencesubfield_countryoccurrencelookup;
    create table st_countryoccurrencesubfield_countryoccurrencelookup as select * from vw_published.vw_countryoccurrencesubfield_countryoccurrencelookup ;
    drop table if exists st_countryoccurrencesubfield_presence;
  6. robheittman revised this gist May 21, 2012. 1 changed file with 10 additions and 4 deletions.
    14 changes: 10 additions & 4 deletions gistfile1.txt
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    Original file line number Diff line number Diff line change
    @@ -1,10 +1,16 @@
    drop table if exists st_countryoccurrencesubfield_countryoccurrencelookup;
    create table st_countryoccurrencesubfield_countryoccurrencelookup as select * from vw_published.vw_countryoccurrencesubfield_countryoccurrencelookup ;
    drop table if exists st_countryoccurrencesubfield_presence;
    create table st_countryoccurrencesubfield_presence as select * from vw_published.vw_countryoccurrencesubfield_presence;
    drop table if exists st_countryoccurrencesubfield_origin;
    create table st_countryoccurrencesubfield_origin as select * from vw_published.vw_countryoccurrencesubfield_origin;
    DROP TABLE IF EXISTS st_countryoccurrence;
    CREATE TABLE st_countryoccurrence AS
    SELECT country.taxonid, country.assessmentid, country.value, country.recordid, record."CODE" as code, record."DESCRIPTION" as country, pres."LABEL" as presence, origin."LABEL" as origin

    FROM vw_published.vw_countryoccurrencesubfield_countryoccurrencelookup country
    FROM st_countryoccurrencesubfield_countryoccurrencelookup country
    JOIN lookups."COUNTRYOCCURRENCELOOKUP" record ON record."ID" = country.value
    LEFT JOIN vw_published.vw_countryoccurrencesubfield_presence c_pres ON country.recordid = c_pres.recordid
    LEFT JOIN st_countryoccurrencesubfield_presence c_pres ON country.recordid = c_pres.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_PRESENCELOOKUP" pres ON pres."ID" = c_pres.value
    LEFT JOIN vw_published.vw_countryoccurrencesubfield_origin c_origin ON country.recordid = c_origin.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_ORIGINLOOKUP" origin ON origin."ID" = c_origin.value
    LEFT JOIN st_countryoccurrencesubfield_origin c_origin ON country.recordid = c_origin.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_ORIGINLOOKUP" origin ON origin."ID" = c_origin.value;
  7. robheittman created this gist May 21, 2012.
    10 changes: 10 additions & 0 deletions gistfile1.txt
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    @@ -0,0 +1,10 @@
    DROP TABLE IF EXISTS st_countryoccurrence;
    CREATE TABLE st_countryoccurrence AS
    SELECT country.taxonid, country.assessmentid, country.value, country.recordid, record."CODE" as code, record."DESCRIPTION" as country, pres."LABEL" as presence, origin."LABEL" as origin

    FROM vw_published.vw_countryoccurrencesubfield_countryoccurrencelookup country
    JOIN lookups."COUNTRYOCCURRENCELOOKUP" record ON record."ID" = country.value
    LEFT JOIN vw_published.vw_countryoccurrencesubfield_presence c_pres ON country.recordid = c_pres.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_PRESENCELOOKUP" pres ON pres."ID" = c_pres.value
    LEFT JOIN vw_published.vw_countryoccurrencesubfield_origin c_origin ON country.recordid = c_origin.recordid
    LEFT JOIN lookups."COUNTRYOCCURRENCE_ORIGINLOOKUP" origin ON origin."ID" = c_origin.value