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February 25, 2019 15:39
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Using the future package in R for parallel computing
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## ////////////////// | |
## FUTURE PACKAGE | |
## ////////////////// | |
## here is a function that sums up really slow | |
## --------------------------------------------- | |
slow_sum <- function(vec) { | |
SUM <- 0 | |
for (i in vec) { | |
SUM <- SUM + i | |
Sys.sleep(0.2) | |
} | |
return(SUM) | |
} | |
## r package needed for microbenchmarking | |
library(microbenchmark) | |
## parameter | |
vec <- 1:20 | |
## 1) traditional computation | |
## ------------------------- | |
microbenchmark(lapply(1:20, FUN = slow_sum), times=10, unit = "us") ## 4'002'902 | |
## 2) using parallel package | |
## ------------------------- | |
microbenchmark(parallel::mclapply(1:20, FUN = slow_sum), times=10, unit = "us") ## 710'882 | |
## 3) how future works | |
## ------------------------- | |
library(future) | |
plan(sequential) | |
tmp <- future(slow_sum(vec)) | |
fa <- value(tmp) | |
## is identical to | |
fa %<-% slow_sum(vec) | |
## 4) using different plans | |
## ------------------------- | |
?plan | |
## sequential | |
plan(sequential) | |
microbenchmark(fa %<-% future( slow_sum(vec) ), times=10, unit = "us") | |
## parallelel | |
plan(multiprocess) | |
microbenchmark(fb %<-% future( slow_sum(vec) ), times=10, unit = "us") | |
## multiprocess will use the maximal available cores | |
future::availableCores("mc.cores") | |
## 5) other options that use future as a backbone: future.apply and furrr | |
## ------------------------- | |
#microbenchmark(future.apply::future_lapply(1:20, FUN = slow_sum), times=10, unit = "us") ## 1'160'609 | |
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