Forked from harishtella/Is there a way to pass a cascalog variable to limit or first-n
Created
November 22, 2011 21:55
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
(defn top-n-seq [sample-name n] | |
(let [aa-seq-fields ["?aa" "?v" "?j" "?sn" "?nc" "?c" "?nf" "?rf" "?cdr3"] | |
sample-name-seqs (<- aa-seq-fields | |
(aa-seqs :>> aa-seq-fields) | |
(= ?sn sample-name))] | |
(<- aa-seq-fields ((c/first-n sample-name-seqs n :sort ["?nc"] :reverse true) | |
:>> aa-seq-fields)))) | |
(let [aa-seq-fields ["?aa" "?v" "?j" "?sn" "?nc" "?c" "?nf" "?rf" "?cdr3"]] | |
(?<- (stdout) aa-seq-fields | |
(top-n-seq :< "IDEA-11-OM" 4 :>> aa-seq-fields)) |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
(defn top-n-seq [sample-name n] | |
(let [aa-seq-fields ["?aa" "?v" "?j" "?sn" "?nc" "?c" "?nf" "?rf" "?cdr3"] | |
sample-name-seqs (<- aa-seq-fields | |
(aa-seqs :>> aa-seq-fields) | |
(= ?sn sample-name))] | |
(<- aa-seq-fields ((c/first-n sample-name-seqs n :sort ["?nc"] :reverse true) | |
:>> aa-seq-fields)))) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment