tabedzki

outer_logger - DEBUG - This is a debug message from the outer logger before calling run_kilosort.
outer_logger - INFO - This is an info message from the outer logger before calling run_kilosort.
test_logging: Kilosort version 4
test_logging: Sorting None
test_logging: ----------------------------------------
test_logging: Encountered error in `run_kilosort`:
Traceback (most recent call last):
  File "/Users/ct5868/test_logging.py", line 22, in run_kilosort
    will_fail()
  File "/Users/ct5868/test_logging.py", line 30, in will_fail

tabedzki

outer_logger - DEBUG - This is a debug message from the outer logger before calling run_kilosort.
outer_logger - INFO - This is an info message from the outer logger before calling run_kilosort.
outer_logger - ERROR - Kilosort4 failed
Traceback (most recent call last):
  File "/Users/ct5868/testing_logging_levels.py", line 35, in <module>
    run_kilosort(settings={}, results_dir='.')
  File "/Users/ct5868/test_logging.py", line 26, in run_kilosort
    raise e
  File "/Users/ct5868/test_logging.py", line 21, in run_kilosort
    will_fail()

tabedzki

% Create a figure and add a toolbar to it
fig = figure('Toolbar', 'none', 'MenuBar', 'none', 'Name', 'Custom Toolbar Dropdown', 'WindowButtonDownFcn', @(src, event)hideContextMenu(src));
tb = uitoolbar(fig);
% Load the icon (e.g. greenarrowicon)
icon = fullfile(matlabroot,'/toolbox/matlab/icons/greenarrowicon.gif');
[cdata,map] = imread(icon);
% Convert white pixels into a transparent background
map(map(:, 1) + map(:, 2) + map(:, 3) == 3) = NaN;
% Convert into 3D RGB-space
cdataRedo = ind2rgb(cdata,map);

tabedzki

import numpy as np
import pbc_utils as pbc
import sys
import os
import math

class input_config: 
    def __init__(self, xbox, ybox, zbox):
        self.natoms = 0
        self.nbonds = 0